Wall clock time and date at job start Mon Mar 30 2020 06:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47455 * 2 1 4 4 N 1.46501 * 109.47345 * 179.97438 * 3 2 1 5 5 C 1.36937 * 119.99853 * 264.11819 * 4 3 2 6 6 H 1.07998 * 120.00131 * 188.01737 * 5 4 3 7 7 C 1.38812 * 120.00038 * 8.00642 * 5 4 3 8 8 N 1.31621 * 119.99973 * 25.65836 * 7 5 4 9 9 Si 1.86797 * 120.00156 * 205.64942 * 7 5 4 10 10 H 1.48499 * 109.47056 * 84.99422 * 9 7 5 11 11 H 1.48498 * 109.47361 * 204.99204 * 9 7 5 12 12 H 1.48499 * 109.47342 * 324.99188 * 9 7 5 13 13 C 1.46501 * 120.00033 * 84.11272 * 4 3 2 14 14 C 1.52996 * 109.47415 * 270.00084 * 13 4 3 15 15 C 1.50695 * 109.47411 * 180.02562 * 14 13 4 16 16 C 1.38229 * 119.62169 * 124.99762 * 15 14 13 17 17 C 1.38622 * 119.16139 * 179.97438 * 16 15 14 18 18 C 1.38674 * 118.42438 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.42069 * 180.02562 * 18 17 16 20 20 C 1.38180 * 119.16056 * 359.97438 * 18 17 16 21 21 N 1.31858 * 119.61398 * 304.72667 * 15 14 13 22 22 H 1.08995 * 109.47293 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47057 * 300.00288 * 1 2 3 24 24 H 1.08998 * 109.47002 * 60.00188 * 1 2 3 25 25 H 1.08999 * 109.47474 * 240.00033 * 2 1 3 26 26 H 1.09004 * 109.47464 * 120.00327 * 2 1 3 27 27 H 1.08999 * 109.46752 * 59.99591 * 3 2 1 28 28 H 1.08998 * 109.46862 * 299.99897 * 3 2 1 29 29 H 0.97001 * 120.00146 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.46778 * 30.00027 * 13 4 3 31 31 H 1.08996 * 109.46921 * 149.99633 * 13 4 3 32 32 H 1.09003 * 109.47114 * 300.00533 * 14 13 4 33 33 H 1.09001 * 109.46736 * 59.99863 * 14 13 4 34 34 H 1.08003 * 120.41639 * 359.95852 * 16 15 14 35 35 H 1.08006 * 120.78918 * 180.02562 * 17 16 15 36 36 H 1.09001 * 109.47004 * 89.99968 * 19 18 17 37 37 H 1.09003 * 109.47235 * 209.99597 * 19 18 17 38 38 H 1.08999 * 109.47252 * 330.00268 * 19 18 17 39 39 H 1.08001 * 119.61836 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1892 1.5642 1.1806 6 1 5.2613 1.6944 1.1722 7 6 3.5048 1.5204 2.3874 8 7 2.3546 0.8858 2.4690 9 14 4.2162 2.3619 3.8957 10 1 3.8294 3.7956 3.8913 11 1 3.6881 1.7106 5.1213 12 1 5.6967 2.2486 3.8737 13 6 4.2381 1.3122 -1.2611 14 6 4.4932 -0.1680 -1.5522 15 6 5.2478 -0.3021 -2.8497 16 6 6.4418 -0.9980 -2.8770 17 6 7.1278 -1.1158 -4.0758 18 6 6.5850 -0.5262 -5.2076 19 6 7.2925 -0.6270 -6.5343 20 6 5.3867 0.1539 -5.1036 21 7 4.7587 0.2413 -3.9471 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 1.8764 0.8549 3.3124 30 1 3.6493 1.7453 -2.0697 31 1 5.1904 1.8367 -1.1838 32 1 5.0819 -0.6012 -0.7435 33 1 3.5408 -0.6925 -1.6295 34 1 6.8354 -1.4440 -1.9755 35 1 8.0627 -1.6541 -4.1272 36 1 6.9520 -1.5186 -7.0608 37 1 7.0693 0.2561 -7.1331 38 1 8.3679 -0.6914 -6.3686 39 1 4.9571 0.6155 -5.9804 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399708803.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:28 Heat of formation + Delta-G solvation = 43.925220 kcal Electronic energy + Delta-G solvation = -17953.150945 eV Core-core repulsion = 15282.064339 eV Total energy + Delta-G solvation = -2671.086607 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.06577 -36.42536 -34.07748 -32.28249 -31.82777 -31.34816 -29.26450 -26.22208 -25.41249 -23.94120 -23.02695 -21.46419 -20.24171 -19.82309 -16.75978 -16.46784 -15.77109 -15.02083 -14.88634 -14.25436 -13.85156 -13.63704 -13.15302 -13.03104 -12.98044 -12.62081 -12.43095 -12.35245 -12.05116 -11.57849 -11.26475 -11.21256 -10.87932 -10.69093 -10.47447 -10.27574 -9.90726 -9.75551 -9.59896 -9.57487 -9.16911 -9.02746 -8.50180 -8.22675 -6.79566 -5.70309 -2.99002 1.30568 1.47273 3.43757 3.51448 3.52212 3.98906 4.54607 4.61423 4.84631 4.90197 5.05935 5.13644 5.40281 5.44823 5.53738 5.59386 5.74128 5.87226 5.93179 6.09053 6.18982 6.30159 6.33373 6.37963 6.44986 6.56724 6.63063 6.82491 6.87379 6.91526 7.02768 7.12294 7.29529 7.38796 7.75118 7.88175 8.17352 8.30053 8.43815 9.31897 9.95575 10.41410 11.33315 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.026724 B = 0.005300 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.512706 B = 5281.361090 C = 5989.541915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.129 4.129 3 C 0.172 3.828 4 N -0.598 5.598 5 C -0.248 4.248 6 H 0.072 0.928 7 C -0.002 4.002 8 N -0.893 5.893 9 Si 0.893 3.107 10 H -0.290 1.290 11 H -0.294 1.294 12 H -0.283 1.283 13 C 0.164 3.836 14 C -0.098 4.098 15 C 0.145 3.855 16 C -0.172 4.172 17 C -0.077 4.077 18 C -0.163 4.163 19 C -0.104 4.104 20 C 0.101 3.899 21 N -0.479 5.479 22 H 0.031 0.969 23 H 0.050 0.950 24 H 0.030 0.970 25 H 0.021 0.979 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.003 0.997 29 H 0.251 0.749 30 H 0.049 0.951 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.133 0.867 35 H 0.127 0.873 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.057 -3.784 -13.340 15.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.168 4.168 3 C 0.047 3.953 4 N -0.317 5.317 5 C -0.377 4.377 6 H 0.090 0.910 7 C -0.199 4.199 8 N -0.539 5.539 9 Si 0.723 3.277 10 H -0.217 1.217 11 H -0.221 1.221 12 H -0.209 1.209 13 C 0.036 3.964 14 C -0.139 4.139 15 C 0.007 3.993 16 C -0.192 4.192 17 C -0.103 4.103 18 C -0.166 4.166 19 C -0.161 4.161 20 C -0.057 4.057 21 N -0.187 5.187 22 H 0.050 0.950 23 H 0.069 0.931 24 H 0.049 0.951 25 H 0.039 0.961 26 H 0.115 0.885 27 H 0.105 0.895 28 H 0.021 0.979 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.157 -3.320 -13.111 14.475 hybrid contribution 1.216 -0.292 0.766 1.466 sum 6.372 -3.611 -12.345 14.354 Atomic orbital electron populations 1.21630 0.98731 0.99148 1.00016 1.22193 0.92738 1.00750 1.01131 1.20869 0.81848 0.94383 0.98218 1.44330 1.01904 1.83772 1.01720 1.19286 0.92167 1.42571 0.83703 0.90984 1.24682 0.97598 1.00529 0.97116 1.70162 1.17242 1.41687 1.24776 0.86433 0.78330 0.80104 0.82819 1.21720 1.22064 1.20879 1.20685 0.95746 0.91340 0.88630 1.21592 0.99519 1.03044 0.89703 1.21755 0.92128 0.90820 0.94602 1.22076 0.96846 1.01483 0.98785 1.21414 0.99256 0.97379 0.92228 1.20818 0.97803 1.01383 0.96548 1.20643 0.99730 1.02286 0.93477 1.22638 0.91537 0.95870 0.95682 1.67567 1.33877 1.18696 0.98586 0.94964 0.93056 0.95053 0.96062 0.88496 0.89497 0.97906 0.93887 0.93282 0.94238 0.90588 0.90102 0.84951 0.85460 0.91419 0.91491 0.91758 0.83386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.91 37.15 0.37 -2.35 16 2 C -0.13 -2.95 5.60 -26.73 -0.15 -3.10 16 3 C 0.17 4.21 4.92 -4.04 -0.02 4.19 16 4 N -0.60 -14.96 2.54 -173.24 -0.44 -15.40 16 5 C -0.25 -6.71 9.70 -15.06 -0.15 -6.85 16 6 H 0.07 1.93 7.94 -52.49 -0.42 1.51 16 7 C 0.00 -0.06 4.89 -17.43 -0.09 -0.14 16 8 N -0.89 -24.67 8.62 55.49 0.48 -24.19 16 9 Si 0.89 21.58 29.62 -169.99 -5.04 16.55 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.16 3.55 5.57 -4.04 -0.02 3.53 16 14 C -0.10 -1.90 5.82 -27.89 -0.16 -2.07 16 15 C 0.14 2.49 6.17 -82.59 -0.51 1.98 16 16 C -0.17 -2.51 9.71 -39.44 -0.38 -2.90 16 17 C -0.08 -0.95 9.86 -39.28 -0.39 -1.34 16 18 C -0.16 -1.95 5.90 -104.48 -0.62 -2.57 16 19 C -0.10 -0.86 10.04 36.00 0.36 -0.50 16 20 C 0.10 1.38 10.86 -17.55 -0.19 1.19 16 21 N -0.48 -8.18 9.89 -9.47 -0.09 -8.28 16 22 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.02 0.47 5.98 -51.93 -0.31 0.16 16 26 H 0.10 2.53 6.33 -51.93 -0.33 2.20 16 27 H 0.09 2.35 5.85 -51.93 -0.30 2.05 16 28 H 0.00 0.06 7.98 -51.93 -0.41 -0.35 16 29 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 30 H 0.05 1.05 7.76 -51.93 -0.40 0.65 16 31 H 0.04 0.85 8.03 -51.93 -0.42 0.44 16 32 H 0.08 1.51 7.87 -51.93 -0.41 1.10 16 33 H 0.08 1.66 5.92 -51.93 -0.31 1.36 16 34 H 0.13 1.75 7.95 -52.48 -0.42 1.33 16 35 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 38 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 39 H 0.15 1.63 8.06 -52.49 -0.42 1.20 16 LS Contribution 315.73 15.07 4.76 4.76 Total: -1.00 -28.81 315.73 -8.51 -37.32 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.24 Total: 0.16 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -1.94 Total: -10.92 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: -0.05 Total: -47.87 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.04 Total: 16.55 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.81 -8.51 -37.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399708803.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.249 kcal (2) G-P(sol) polarization free energy of solvation -28.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds