Wall clock time and date at job start Mon Mar 30 2020 06:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47455 * 2 1 4 4 N 1.46501 * 109.47345 * 179.97438 * 3 2 1 5 5 C 1.36937 * 119.99853 * 264.11819 * 4 3 2 6 6 H 1.07998 * 120.00131 * 188.01737 * 5 4 3 7 7 C 1.38812 * 120.00038 * 8.00642 * 5 4 3 8 8 N 1.31621 * 119.99973 * 25.65836 * 7 5 4 9 9 Si 1.86797 * 120.00156 * 205.64942 * 7 5 4 10 10 H 1.48499 * 109.47056 * 84.99422 * 9 7 5 11 11 H 1.48498 * 109.47361 * 204.99204 * 9 7 5 12 12 H 1.48499 * 109.47342 * 324.99188 * 9 7 5 13 13 C 1.46501 * 120.00033 * 84.11272 * 4 3 2 14 14 C 1.52996 * 109.47415 * 270.00084 * 13 4 3 15 15 C 1.50695 * 109.47411 * 180.02562 * 14 13 4 16 16 C 1.38229 * 119.62169 * 124.99762 * 15 14 13 17 17 C 1.38622 * 119.16139 * 179.97438 * 16 15 14 18 18 C 1.38674 * 118.42438 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.42069 * 180.02562 * 18 17 16 20 20 C 1.38180 * 119.16056 * 359.97438 * 18 17 16 21 21 N 1.31858 * 119.61398 * 304.72667 * 15 14 13 22 22 H 1.08995 * 109.47293 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47057 * 300.00288 * 1 2 3 24 24 H 1.08998 * 109.47002 * 60.00188 * 1 2 3 25 25 H 1.08999 * 109.47474 * 240.00033 * 2 1 3 26 26 H 1.09004 * 109.47464 * 120.00327 * 2 1 3 27 27 H 1.08999 * 109.46752 * 59.99591 * 3 2 1 28 28 H 1.08998 * 109.46862 * 299.99897 * 3 2 1 29 29 H 0.97001 * 120.00146 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.46778 * 30.00027 * 13 4 3 31 31 H 1.08996 * 109.46921 * 149.99633 * 13 4 3 32 32 H 1.09003 * 109.47114 * 300.00533 * 14 13 4 33 33 H 1.09001 * 109.46736 * 59.99863 * 14 13 4 34 34 H 1.08003 * 120.41639 * 359.95852 * 16 15 14 35 35 H 1.08006 * 120.78918 * 180.02562 * 17 16 15 36 36 H 1.09001 * 109.47004 * 89.99968 * 19 18 17 37 37 H 1.09003 * 109.47235 * 209.99597 * 19 18 17 38 38 H 1.08999 * 109.47252 * 330.00268 * 19 18 17 39 39 H 1.08001 * 119.61836 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1892 1.5642 1.1806 6 1 5.2613 1.6944 1.1722 7 6 3.5048 1.5204 2.3874 8 7 2.3546 0.8858 2.4690 9 14 4.2162 2.3619 3.8957 10 1 3.8294 3.7956 3.8913 11 1 3.6881 1.7106 5.1213 12 1 5.6967 2.2486 3.8737 13 6 4.2381 1.3122 -1.2611 14 6 4.4932 -0.1680 -1.5522 15 6 5.2478 -0.3021 -2.8497 16 6 6.4418 -0.9980 -2.8770 17 6 7.1278 -1.1158 -4.0758 18 6 6.5850 -0.5262 -5.2076 19 6 7.2925 -0.6270 -6.5343 20 6 5.3867 0.1539 -5.1036 21 7 4.7587 0.2413 -3.9471 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 1.8764 0.8549 3.3124 30 1 3.6493 1.7453 -2.0697 31 1 5.1904 1.8367 -1.1838 32 1 5.0819 -0.6012 -0.7435 33 1 3.5408 -0.6925 -1.6295 34 1 6.8354 -1.4440 -1.9755 35 1 8.0627 -1.6541 -4.1272 36 1 6.9520 -1.5186 -7.0608 37 1 7.0693 0.2561 -7.1331 38 1 8.3679 -0.6914 -6.3686 39 1 4.9571 0.6155 -5.9804 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399708803.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:28 Heat of formation + Delta-G solvation = 29.319180 kcal Electronic energy + Delta-G solvation = -17953.784311 eV Core-core repulsion = 15282.064339 eV Total energy + Delta-G solvation = -2671.719972 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.18337 -38.28040 -35.32838 -33.72817 -33.60943 -32.80694 -30.72433 -27.45008 -27.34151 -25.35359 -24.31408 -22.84087 -21.74510 -21.73142 -18.74738 -17.60398 -17.03269 -16.81730 -15.95459 -15.80289 -15.46033 -15.25402 -14.80820 -14.32547 -14.24532 -13.93955 -13.75785 -13.43195 -13.31615 -13.20886 -12.90894 -12.75380 -12.59470 -12.36590 -12.26960 -12.12435 -11.70090 -11.69556 -11.39598 -11.03641 -10.67364 -10.36695 -10.17553 -9.60878 -8.77871 -7.76733 -5.07467 0.21165 0.42371 1.49274 1.53319 1.59016 2.56639 2.87205 3.31113 3.43758 3.67543 3.97859 4.01425 4.12149 4.16597 4.34839 4.52805 4.59880 4.61047 4.74316 4.78205 4.86065 4.88127 4.90605 4.94951 4.97862 5.09980 5.22388 5.24195 5.35937 5.41129 5.42186 5.47964 5.55022 5.65888 5.89018 5.89892 6.21314 6.39217 7.16039 7.25563 7.96055 8.38584 9.24798 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.026724 B = 0.005300 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.512706 B = 5281.361090 C = 5989.541915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.117 4.117 3 C 0.176 3.824 4 N -0.613 5.613 5 C -0.262 4.262 6 H 0.069 0.931 7 C -0.045 4.045 8 N -0.909 5.909 9 Si 0.952 3.048 10 H -0.292 1.292 11 H -0.297 1.297 12 H -0.276 1.276 13 C 0.170 3.830 14 C -0.079 4.079 15 C 0.114 3.886 16 C -0.177 4.177 17 C -0.076 4.076 18 C -0.149 4.149 19 C -0.102 4.102 20 C 0.085 3.915 21 N -0.509 5.509 22 H 0.050 0.950 23 H 0.040 0.960 24 H 0.049 0.951 25 H 0.024 0.976 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.012 0.988 29 H 0.246 0.754 30 H 0.047 0.953 31 H 0.034 0.966 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.140 0.860 35 H 0.162 0.838 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.450 -4.242 -15.328 17.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.157 4.157 3 C 0.051 3.949 4 N -0.334 5.334 5 C -0.391 4.391 6 H 0.087 0.913 7 C -0.241 4.241 8 N -0.556 5.556 9 Si 0.782 3.218 10 H -0.220 1.220 11 H -0.224 1.224 12 H -0.202 1.202 13 C 0.043 3.957 14 C -0.120 4.120 15 C -0.023 4.023 16 C -0.197 4.197 17 C -0.102 4.102 18 C -0.151 4.151 19 C -0.159 4.159 20 C -0.073 4.073 21 N -0.219 5.219 22 H 0.069 0.931 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.042 0.958 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.030 0.970 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.158 0.842 35 H 0.180 0.820 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 6.566 -3.783 -15.123 16.915 hybrid contribution 0.852 -0.159 1.220 1.497 sum 7.419 -3.942 -13.903 16.244 Atomic orbital electron populations 1.21532 0.96232 1.00501 1.00408 1.21967 0.94904 0.99249 0.99535 1.20751 0.81863 0.95116 0.97153 1.44479 1.02267 1.84466 1.02227 1.19466 0.92243 1.42704 0.84703 0.91342 1.25301 0.98354 1.01097 0.99319 1.70318 1.18126 1.42228 1.24879 0.85504 0.77942 0.78608 0.79762 1.21955 1.22360 1.20172 1.20636 0.94973 0.92894 0.87176 1.21150 0.98905 1.00681 0.91229 1.21367 0.93462 0.93683 0.93809 1.22195 0.96091 1.01063 1.00374 1.21828 1.00134 0.97000 0.91239 1.21283 0.96755 0.98851 0.98199 1.20742 1.00232 1.03610 0.91343 1.23137 0.92442 0.96412 0.95270 1.67436 1.35286 1.19580 0.99560 0.93137 0.94033 0.93208 0.95761 0.91814 0.92229 0.96985 0.94429 0.93414 0.94733 0.91833 0.91879 0.84200 0.82020 0.89926 0.90182 0.90167 0.80988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.04 9.91 71.98 0.71 -4.32 16 2 C -0.12 -5.46 5.60 30.59 0.17 -5.29 16 3 C 0.18 8.84 4.92 86.38 0.43 9.26 16 4 N -0.61 -31.59 2.54 -702.00 -1.78 -33.38 16 5 C -0.26 -14.48 9.70 84.03 0.81 -13.66 16 6 H 0.07 3.75 7.94 -2.91 -0.02 3.72 16 7 C -0.05 -2.50 4.89 84.86 0.41 -2.09 16 8 N -0.91 -51.53 8.62 21.65 0.19 -51.34 16 9 Si 0.95 45.13 29.62 68.60 2.03 47.16 16 10 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 11 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 13 C 0.17 7.57 5.57 86.38 0.48 8.05 16 14 C -0.08 -3.18 5.82 29.85 0.17 -3.01 16 15 C 0.11 3.93 6.17 42.55 0.26 4.20 16 16 C -0.18 -5.00 9.71 22.36 0.22 -4.78 16 17 C -0.08 -1.66 9.86 22.47 0.22 -1.44 16 18 C -0.15 -3.09 5.90 -19.77 -0.12 -3.20 16 19 C -0.10 -1.23 10.04 71.23 0.72 -0.52 16 20 C 0.08 2.17 10.86 84.67 0.92 3.09 16 21 N -0.51 -17.21 9.89 -183.88 -1.82 -19.03 16 22 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.02 1.09 5.98 -2.39 -0.01 1.08 16 26 H 0.06 3.43 6.33 -2.38 -0.02 3.41 16 27 H 0.06 3.32 5.85 -2.39 -0.01 3.30 16 28 H 0.01 0.57 7.98 -2.39 -0.02 0.55 16 29 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 30 H 0.05 2.10 7.76 -2.39 -0.02 2.09 16 31 H 0.03 1.54 8.03 -2.39 -0.02 1.52 16 32 H 0.06 2.64 7.87 -2.39 -0.02 2.62 16 33 H 0.06 2.70 5.92 -2.39 -0.01 2.69 16 34 H 0.14 3.60 7.95 -2.91 -0.02 3.57 16 35 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 36 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.08 0.80 8.09 -2.39 -0.02 0.78 16 38 H 0.08 0.77 8.10 -2.39 -0.02 0.75 16 39 H 0.17 3.36 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -63.27 315.73 5.04 -58.23 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 1.01 Total: 12.07 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: 5.41 Total: -13.72 kcal Atomic # 7 Polarization: -100.33 SS G_CDS: -3.41 Total: -103.75 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -63.27 5.04 -58.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399708803.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.549 kcal (2) G-P(sol) polarization free energy of solvation -63.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds