Wall clock time and date at job start Mon Mar 30 2020 05:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38673 * 120.41750 * 2 1 4 4 C 1.38634 * 118.41570 * 180.02562 * 3 2 1 5 5 C 1.38220 * 119.16602 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.61970 * 179.72374 * 5 4 3 7 7 C 1.52996 * 109.47491 * 125.00023 * 6 5 4 8 8 N 1.46500 * 109.47361 * 180.02562 * 7 6 5 9 9 C 1.36935 * 120.00170 * 269.99672 * 8 7 6 10 10 H 1.07992 * 120.00235 * 141.90768 * 9 8 7 11 11 C 1.38818 * 120.00024 * 321.91171 * 9 8 7 12 12 N 1.31620 * 119.99533 * 338.46398 * 11 9 8 13 13 Si 1.86803 * 120.00099 * 158.45615 * 11 9 8 14 14 H 1.48504 * 109.46749 * 60.00591 * 13 11 9 15 15 H 1.48501 * 109.46798 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47253 * 300.00385 * 13 11 9 17 17 C 1.46500 * 120.00072 * 89.99784 * 8 7 6 18 18 C 1.53004 * 109.47382 * 122.24060 * 17 8 7 19 19 C 1.53005 * 109.47129 * 242.23720 * 17 8 7 20 20 N 1.31859 * 120.76249 * 359.97438 * 5 4 3 21 21 C 1.31886 * 121.72627 * 359.97438 * 20 5 4 22 22 H 1.09009 * 109.46778 * 90.00154 * 1 2 3 23 23 H 1.08998 * 109.47327 * 209.99650 * 1 2 3 24 24 H 1.09000 * 109.47490 * 330.00295 * 1 2 3 25 25 H 1.07995 * 120.79473 * 359.97438 * 3 2 1 26 26 H 1.08007 * 120.41414 * 180.02562 * 4 3 2 27 27 H 1.09010 * 109.47171 * 245.00058 * 6 5 4 28 28 H 1.08999 * 109.47471 * 4.99299 * 6 5 4 29 29 H 1.09006 * 109.46990 * 299.99650 * 7 6 5 30 30 H 1.08993 * 109.47458 * 59.99628 * 7 6 5 31 31 H 0.97002 * 119.99840 * 179.97438 * 12 11 9 32 32 H 1.08995 * 109.47424 * 2.23667 * 17 8 7 33 33 H 1.09000 * 109.46751 * 65.40065 * 18 17 8 34 34 H 1.08994 * 109.47028 * 185.39896 * 18 17 8 35 35 H 1.09006 * 109.46614 * 305.40553 * 18 17 8 36 36 H 1.09002 * 109.46808 * 60.43781 * 19 17 8 37 37 H 1.08990 * 109.47192 * 180.43433 * 19 17 8 38 38 H 1.08999 * 109.47079 * 300.44075 * 19 17 8 39 39 H 1.07991 * 119.61797 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5946 1.1474 -0.0005 5 6 4.2256 -0.0823 -0.0016 6 6 5.7311 -0.1469 -0.0085 7 6 6.2108 -0.9935 1.1721 8 7 7.6745 -1.0558 1.1657 9 6 8.3143 -2.0564 0.4841 10 1 9.2291 -1.8466 -0.0500 11 6 7.7869 -3.3404 0.4797 12 7 6.9535 -3.7128 1.4280 13 14 8.2597 -4.5397 -0.8723 14 1 9.7288 -4.7554 -0.8510 15 1 7.5656 -5.8337 -0.6510 16 1 7.8601 -3.9831 -2.1897 17 6 8.4537 -0.0475 1.8885 18 6 9.3512 -0.7378 2.9177 19 6 9.3203 0.7335 0.8986 20 7 3.5254 -1.1996 -0.0016 21 6 2.2066 -1.1917 -0.0001 22 1 -0.3633 0.0000 -1.0278 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.6890 2.1423 -0.0004 26 1 4.1735 2.0592 -0.0001 27 1 6.0712 -0.5978 -0.9409 28 1 6.1385 0.8605 0.0775 29 1 5.8708 -0.5426 2.1045 30 1 5.8036 -2.0008 1.0861 31 1 6.5847 -4.6100 1.4247 32 1 7.7769 0.6380 2.3984 33 1 10.0910 -1.3499 2.4020 34 1 9.8589 0.0154 3.5201 35 1 8.7427 -1.3706 3.5639 36 1 8.6805 1.2316 0.1700 37 1 9.9057 1.4785 1.4373 38 1 9.9917 0.0469 0.3831 39 1 1.6672 -2.1272 0.0003 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399796420.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:25 Heat of formation + Delta-G solvation = 37.668281 kcal Electronic energy + Delta-G solvation = -18165.143701 eV Core-core repulsion = 15493.785773 eV Total energy + Delta-G solvation = -2671.357928 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.92113 -36.54917 -33.99164 -32.32957 -31.95727 -30.66179 -28.51404 -26.12989 -26.00782 -24.15172 -23.27735 -21.78398 -20.42944 -19.42303 -16.46779 -15.94001 -15.70827 -14.94233 -14.84957 -14.15668 -13.99145 -13.70810 -13.03571 -12.92346 -12.81253 -12.52872 -12.32361 -12.15065 -12.03413 -11.42824 -11.32281 -11.18714 -10.96130 -10.75332 -10.62432 -10.36846 -10.12608 -9.84823 -9.55364 -9.45794 -9.42740 -8.85821 -8.39292 -8.30052 -6.42121 -5.64629 -3.22824 1.44010 1.61256 3.45322 3.51655 3.53639 4.14493 4.58259 4.75111 4.95275 5.01252 5.15411 5.24568 5.47733 5.53613 5.56574 5.62820 5.79984 5.97709 6.02287 6.06828 6.21550 6.25639 6.41272 6.48276 6.49636 6.50560 6.60814 6.76754 6.78416 6.86116 6.87920 7.08753 7.24575 7.29772 7.42814 7.92212 7.99694 8.50593 8.67647 9.33226 9.96252 10.55239 11.34967 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.020250 B = 0.006734 C = 0.005510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.385755 B = 4157.220336 C = 5080.342514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.166 4.166 3 C -0.079 4.079 4 C -0.178 4.178 5 C 0.149 3.851 6 C -0.091 4.091 7 C 0.158 3.842 8 N -0.579 5.579 9 C -0.259 4.259 10 H 0.058 0.942 11 C 0.018 3.982 12 N -0.880 5.880 13 Si 0.892 3.108 14 H -0.283 1.283 15 H -0.291 1.291 16 H -0.284 1.284 17 C 0.161 3.839 18 C -0.145 4.145 19 C -0.154 4.154 20 N -0.466 5.466 21 C 0.103 3.897 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.126 0.874 26 H 0.129 0.871 27 H 0.080 0.920 28 H 0.058 0.942 29 H 0.016 0.984 30 H 0.108 0.892 31 H 0.254 0.746 32 H 0.043 0.957 33 H 0.053 0.947 34 H 0.027 0.973 35 H 0.050 0.950 36 H 0.042 0.958 37 H 0.034 0.966 38 H 0.053 0.947 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.875 9.385 -1.632 13.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.168 4.168 3 C -0.105 4.105 4 C -0.198 4.198 5 C 0.011 3.989 6 C -0.132 4.132 7 C 0.031 3.969 8 N -0.299 5.299 9 C -0.388 4.388 10 H 0.076 0.924 11 C -0.183 4.183 12 N -0.521 5.521 13 Si 0.722 3.278 14 H -0.210 1.210 15 H -0.217 1.217 16 H -0.210 1.210 17 C 0.054 3.946 18 C -0.204 4.204 19 C -0.213 4.213 20 N -0.174 5.174 21 C -0.055 4.055 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.144 0.856 26 H 0.147 0.853 27 H 0.098 0.902 28 H 0.076 0.924 29 H 0.035 0.965 30 H 0.125 0.875 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.046 0.954 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.484 8.406 -1.565 12.045 hybrid contribution -0.311 0.191 -0.743 0.828 sum -8.795 8.597 -2.308 12.514 Atomic orbital electron populations 1.20633 0.90836 1.02592 1.01989 1.20821 0.97089 0.94517 1.04344 1.21358 0.94076 0.97684 0.97344 1.22016 0.94870 0.99214 1.03690 1.21717 0.97757 0.87724 0.91724 1.21384 0.86058 1.01423 1.04322 1.20872 0.84005 1.01105 0.90896 1.43887 1.00345 1.28431 1.57225 1.18811 1.08846 0.86978 1.24196 0.92436 1.25155 0.99678 0.96591 0.96900 1.69981 1.33665 1.18256 1.30244 0.86553 0.77901 0.80476 0.82887 1.20954 1.21731 1.20999 1.20416 0.92333 0.90685 0.91127 1.22056 1.00098 0.99390 0.98837 1.22190 1.00057 0.99135 0.99929 1.67655 1.07413 1.31254 1.11100 1.22697 0.90212 0.97087 0.95492 0.91514 0.91495 0.91864 0.85634 0.85297 0.90179 0.92352 0.96507 0.87458 0.93604 0.93854 0.92743 0.95375 0.93062 0.93881 0.94659 0.92741 0.83430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 10.04 36.00 0.36 -0.62 16 2 C -0.17 -2.22 5.90 -104.48 -0.62 -2.84 16 3 C -0.08 -1.05 9.86 -39.27 -0.39 -1.43 16 4 C -0.18 -2.73 9.71 -39.44 -0.38 -3.11 16 5 C 0.15 2.81 6.17 -82.59 -0.51 2.30 16 6 C -0.09 -1.88 5.94 -27.89 -0.17 -2.05 16 7 C 0.16 3.81 5.13 -4.04 -0.02 3.79 16 8 N -0.58 -14.34 2.36 -165.66 -0.39 -14.73 16 9 C -0.26 -7.00 8.23 -15.06 -0.12 -7.13 16 10 H 0.06 1.57 6.94 -52.49 -0.36 1.20 16 11 C 0.02 0.50 4.95 -17.43 -0.09 0.41 16 12 N -0.88 -25.76 11.52 55.49 0.64 -25.12 16 13 Si 0.89 22.09 29.61 -169.99 -5.03 17.06 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 16 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 17 C 0.16 3.44 3.36 -67.93 -0.23 3.21 16 18 C -0.14 -3.03 9.03 37.16 0.34 -2.69 16 19 C -0.15 -2.89 9.20 37.16 0.34 -2.55 16 20 N -0.47 -9.29 9.89 -9.48 -0.09 -9.38 16 21 C 0.10 1.66 10.86 -17.55 -0.19 1.47 16 22 H 0.07 0.57 8.14 -51.92 -0.42 0.14 16 23 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 24 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 25 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 26 H 0.13 1.69 7.95 -52.48 -0.42 1.27 16 27 H 0.08 1.80 8.14 -51.92 -0.42 1.37 16 28 H 0.06 1.08 7.87 -51.93 -0.41 0.67 16 29 H 0.02 0.40 7.90 -51.93 -0.41 -0.01 16 30 H 0.11 2.97 5.37 -51.93 -0.28 2.69 16 31 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.04 0.88 7.78 -51.93 -0.40 0.47 16 33 H 0.05 1.20 7.80 -51.93 -0.40 0.79 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.05 1.09 7.06 -51.93 -0.37 0.72 16 39 H 0.15 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 321.22 15.07 4.84 4.84 Total: -1.00 -30.18 321.22 -8.12 -38.30 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -6.41 Total: 0.26 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -1.67 Total: -11.24 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 0.15 Total: -49.22 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.18 -8.12 -38.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399796420.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.972 kcal (2) G-P(sol) polarization free energy of solvation -30.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds