Wall clock time and date at job start Mon Mar 30 2020 05:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38673 * 120.41750 * 2 1 4 4 C 1.38634 * 118.41570 * 180.02562 * 3 2 1 5 5 C 1.38220 * 119.16602 * 0.02562 * 4 3 2 6 6 C 1.50696 * 119.61970 * 179.72374 * 5 4 3 7 7 C 1.52996 * 109.47491 * 125.00023 * 6 5 4 8 8 N 1.46500 * 109.47361 * 180.02562 * 7 6 5 9 9 C 1.36935 * 120.00170 * 269.99672 * 8 7 6 10 10 H 1.07992 * 120.00235 * 141.90768 * 9 8 7 11 11 C 1.38818 * 120.00024 * 321.91171 * 9 8 7 12 12 N 1.31620 * 119.99533 * 338.46398 * 11 9 8 13 13 Si 1.86803 * 120.00099 * 158.45615 * 11 9 8 14 14 H 1.48504 * 109.46749 * 60.00591 * 13 11 9 15 15 H 1.48501 * 109.46798 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47253 * 300.00385 * 13 11 9 17 17 C 1.46500 * 120.00072 * 89.99784 * 8 7 6 18 18 C 1.53004 * 109.47382 * 122.24060 * 17 8 7 19 19 C 1.53005 * 109.47129 * 242.23720 * 17 8 7 20 20 N 1.31859 * 120.76249 * 359.97438 * 5 4 3 21 21 C 1.31886 * 121.72627 * 359.97438 * 20 5 4 22 22 H 1.09009 * 109.46778 * 90.00154 * 1 2 3 23 23 H 1.08998 * 109.47327 * 209.99650 * 1 2 3 24 24 H 1.09000 * 109.47490 * 330.00295 * 1 2 3 25 25 H 1.07995 * 120.79473 * 359.97438 * 3 2 1 26 26 H 1.08007 * 120.41414 * 180.02562 * 4 3 2 27 27 H 1.09010 * 109.47171 * 245.00058 * 6 5 4 28 28 H 1.08999 * 109.47471 * 4.99299 * 6 5 4 29 29 H 1.09006 * 109.46990 * 299.99650 * 7 6 5 30 30 H 1.08993 * 109.47458 * 59.99628 * 7 6 5 31 31 H 0.97002 * 119.99840 * 179.97438 * 12 11 9 32 32 H 1.08995 * 109.47424 * 2.23667 * 17 8 7 33 33 H 1.09000 * 109.46751 * 65.40065 * 18 17 8 34 34 H 1.08994 * 109.47028 * 185.39896 * 18 17 8 35 35 H 1.09006 * 109.46614 * 305.40553 * 18 17 8 36 36 H 1.09002 * 109.46808 * 60.43781 * 19 17 8 37 37 H 1.08990 * 109.47192 * 180.43433 * 19 17 8 38 38 H 1.08999 * 109.47079 * 300.44075 * 19 17 8 39 39 H 1.07991 * 119.61797 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5946 1.1474 -0.0005 5 6 4.2256 -0.0823 -0.0016 6 6 5.7311 -0.1469 -0.0085 7 6 6.2108 -0.9935 1.1721 8 7 7.6745 -1.0558 1.1657 9 6 8.3143 -2.0564 0.4841 10 1 9.2291 -1.8466 -0.0500 11 6 7.7869 -3.3404 0.4797 12 7 6.9535 -3.7128 1.4280 13 14 8.2597 -4.5397 -0.8723 14 1 9.7288 -4.7554 -0.8510 15 1 7.5656 -5.8337 -0.6510 16 1 7.8601 -3.9831 -2.1897 17 6 8.4537 -0.0475 1.8885 18 6 9.3512 -0.7378 2.9177 19 6 9.3203 0.7335 0.8986 20 7 3.5254 -1.1996 -0.0016 21 6 2.2066 -1.1917 -0.0001 22 1 -0.3633 0.0000 -1.0278 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.6890 2.1423 -0.0004 26 1 4.1735 2.0592 -0.0001 27 1 6.0712 -0.5978 -0.9409 28 1 6.1385 0.8605 0.0775 29 1 5.8708 -0.5426 2.1045 30 1 5.8036 -2.0008 1.0861 31 1 6.5847 -4.6100 1.4247 32 1 7.7769 0.6380 2.3984 33 1 10.0910 -1.3499 2.4020 34 1 9.8589 0.0154 3.5201 35 1 8.7427 -1.3706 3.5639 36 1 8.6805 1.2316 0.1700 37 1 9.9057 1.4785 1.4373 38 1 9.9917 0.0469 0.3831 39 1 1.6672 -2.1272 0.0003 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399796420.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:24 Heat of formation + Delta-G solvation = 21.024977 kcal Electronic energy + Delta-G solvation = -18165.865408 eV Core-core repulsion = 15493.785773 eV Total energy + Delta-G solvation = -2672.079636 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.15084 -38.36895 -35.26448 -34.19134 -33.35343 -32.17367 -30.11811 -27.73329 -27.48327 -25.86086 -24.59454 -23.22124 -21.86321 -21.29003 -18.17156 -17.48260 -16.98355 -16.86170 -16.01437 -15.87862 -15.56618 -15.22784 -14.55972 -14.27133 -14.15386 -13.84166 -13.69062 -13.47956 -13.20088 -13.18816 -12.91782 -12.82393 -12.60354 -12.51216 -12.39864 -12.16817 -11.88980 -11.72123 -11.36398 -11.23469 -10.64933 -10.43238 -10.15146 -9.58135 -8.45739 -7.73120 -5.35477 0.23637 0.47002 1.44081 1.48551 1.53112 2.54050 2.90641 3.33106 3.49546 3.66802 3.98895 4.02799 4.15783 4.18972 4.35825 4.49890 4.59818 4.63654 4.76607 4.81956 4.83394 4.87081 4.97218 4.97482 4.99978 5.14745 5.20730 5.21736 5.22758 5.29661 5.39750 5.50260 5.62829 5.69510 5.78834 5.91072 6.01228 6.56950 7.25798 7.26332 7.97294 8.50076 9.21589 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.020250 B = 0.006734 C = 0.005510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.385755 B = 4157.220336 C = 5080.342514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.150 4.150 3 C -0.076 4.076 4 C -0.171 4.171 5 C 0.111 3.889 6 C -0.072 4.072 7 C 0.164 3.836 8 N -0.594 5.594 9 C -0.252 4.252 10 H 0.055 0.945 11 C -0.034 4.034 12 N -0.912 5.912 13 Si 0.946 3.054 14 H -0.273 1.273 15 H -0.297 1.297 16 H -0.285 1.285 17 C 0.151 3.849 18 C -0.136 4.136 19 C -0.142 4.142 20 N -0.516 5.516 21 C 0.078 3.922 22 H 0.082 0.918 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.169 0.831 26 H 0.153 0.847 27 H 0.049 0.951 28 H 0.078 0.922 29 H 0.010 0.990 30 H 0.069 0.931 31 H 0.246 0.754 32 H 0.056 0.944 33 H 0.036 0.964 34 H 0.067 0.933 35 H 0.021 0.979 36 H 0.046 0.954 37 H 0.068 0.932 38 H 0.037 0.963 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.013 12.026 -2.033 15.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.152 4.152 3 C -0.101 4.101 4 C -0.191 4.191 5 C -0.026 4.026 6 C -0.113 4.113 7 C 0.037 3.963 8 N -0.315 5.315 9 C -0.383 4.383 10 H 0.073 0.927 11 C -0.232 4.232 12 N -0.556 5.556 13 Si 0.775 3.225 14 H -0.198 1.198 15 H -0.223 1.223 16 H -0.211 1.211 17 C 0.045 3.955 18 C -0.195 4.195 19 C -0.200 4.200 20 N -0.225 5.225 21 C -0.080 4.080 22 H 0.101 0.899 23 H 0.093 0.907 24 H 0.103 0.897 25 H 0.186 0.814 26 H 0.171 0.829 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.029 0.971 30 H 0.087 0.913 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.085 0.915 35 H 0.040 0.960 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.056 0.944 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -9.611 11.071 -1.974 14.794 hybrid contribution -0.055 -0.544 -0.576 0.794 sum -9.667 10.528 -2.550 14.518 Atomic orbital electron populations 1.20734 0.87588 1.04091 1.03411 1.21274 0.99300 0.93515 1.01062 1.21853 0.93266 0.99361 0.95661 1.22227 0.96242 0.98424 1.02215 1.21508 0.96698 0.89198 0.95229 1.20998 0.88166 1.01165 1.00932 1.20632 0.83819 0.99708 0.92126 1.44118 1.00788 1.28798 1.57816 1.18980 1.08374 0.87424 1.23498 0.92697 1.25786 1.00445 0.98228 0.98710 1.70126 1.35416 1.18107 1.31960 0.85676 0.77947 0.78398 0.80449 1.19850 1.22310 1.21121 1.20680 0.92729 0.90311 0.91772 1.21961 0.99265 0.99679 0.98555 1.22031 0.99528 0.99072 0.99417 1.67485 1.09598 1.32792 1.12634 1.23038 0.89290 0.99102 0.96551 0.89919 0.90749 0.89700 0.81395 0.82911 0.93196 0.90302 0.97148 0.91296 0.94447 0.92561 0.94504 0.91465 0.96007 0.93484 0.91269 0.94424 0.82314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.53 10.04 71.23 0.72 -0.81 16 2 C -0.15 -3.63 5.90 -19.77 -0.12 -3.74 16 3 C -0.08 -1.75 9.86 22.47 0.22 -1.53 16 4 C -0.17 -4.90 9.71 22.36 0.22 -4.69 16 5 C 0.11 4.24 6.17 42.55 0.26 4.50 16 6 C -0.07 -3.05 5.94 29.85 0.18 -2.87 16 7 C 0.16 8.20 5.13 86.38 0.44 8.65 16 8 N -0.59 -30.05 2.36 -678.04 -1.60 -31.65 16 9 C -0.25 -14.01 8.23 84.04 0.69 -13.32 16 10 H 0.06 3.04 6.94 -2.91 -0.02 3.02 16 11 C -0.03 -1.97 4.95 84.86 0.42 -1.55 16 12 N -0.91 -55.95 11.52 21.65 0.25 -55.70 16 13 Si 0.95 46.90 29.61 68.60 2.03 48.93 16 14 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 15 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 16 H -0.28 -14.00 7.11 99.48 0.71 -13.29 16 17 C 0.15 6.32 3.36 44.99 0.15 6.47 16 18 C -0.14 -5.60 9.03 71.98 0.65 -4.95 16 19 C -0.14 -5.04 9.20 71.98 0.66 -4.38 16 20 N -0.52 -21.24 9.89 -183.90 -1.82 -23.06 16 21 C 0.08 2.48 10.86 84.67 0.92 3.40 16 22 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 23 H 0.07 1.05 8.09 -2.39 -0.02 1.03 16 24 H 0.08 0.97 8.10 -2.39 -0.02 0.95 16 25 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 26 H 0.15 3.52 7.95 -2.91 -0.02 3.49 16 27 H 0.05 2.34 8.14 -2.38 -0.02 2.32 16 28 H 0.08 2.89 7.87 -2.39 -0.02 2.87 16 29 H 0.01 0.50 7.90 -2.38 -0.02 0.48 16 30 H 0.07 4.05 5.37 -2.39 -0.01 4.04 16 31 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 32 H 0.06 2.20 7.78 -2.39 -0.02 2.18 16 33 H 0.04 1.61 7.80 -2.39 -0.02 1.59 16 34 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.04 1.45 7.06 -2.39 -0.02 1.43 16 39 H 0.16 4.39 8.06 -2.92 -0.02 4.37 16 Total: -1.00 -69.18 321.22 5.28 -63.90 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 1.00 Total: 12.40 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: 5.42 Total: -14.81 kcal Atomic # 7 Polarization: -107.24 SS G_CDS: -3.17 Total: -110.41 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -69.18 5.28 -63.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399796420.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.927 kcal (2) G-P(sol) polarization free energy of solvation -69.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds