Wall clock time and date at job start Mon Mar 30 2020 05:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38673 * 120.41889 * 2 1 4 4 C 1.38626 * 118.42181 * 180.02562 * 3 2 1 5 5 C 1.38230 * 119.15896 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.61573 * 179.97438 * 5 4 3 7 7 N 1.46902 * 109.46577 * 94.99896 * 6 5 4 8 8 C 1.46905 * 110.99800 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47234 * 180.02562 * 8 7 6 10 10 C 1.52995 * 109.46860 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.46860 * 179.97438 * 10 9 8 12 12 C 1.50705 * 109.47237 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00032 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00139 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99998 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00317 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46994 * 89.99485 * 16 14 12 18 18 H 1.48494 * 109.47584 * 209.99787 * 16 14 12 19 19 H 1.48506 * 109.46969 * 330.00161 * 16 14 12 20 20 N 1.31854 * 120.76756 * 0.25243 * 5 4 3 21 21 C 1.31892 * 121.72001 * 359.47021 * 20 5 4 22 22 H 1.09004 * 109.47531 * 89.99854 * 1 2 3 23 23 H 1.09007 * 109.47201 * 209.99847 * 1 2 3 24 24 H 1.08996 * 109.47162 * 329.99598 * 1 2 3 25 25 H 1.07998 * 120.78825 * 0.02562 * 3 2 1 26 26 H 1.07996 * 120.41975 * 180.02562 * 4 3 2 27 27 H 1.09000 * 109.47318 * 214.99404 * 6 5 4 28 28 H 1.09000 * 109.47161 * 335.00034 * 6 5 4 29 29 H 1.00898 * 110.99915 * 56.05080 * 7 6 5 30 30 H 1.09002 * 109.47091 * 300.00139 * 8 7 6 31 31 H 1.09001 * 109.46854 * 60.00166 * 8 7 6 32 32 H 1.09002 * 109.47089 * 300.00010 * 9 8 7 33 33 H 1.09001 * 109.47170 * 60.00230 * 9 8 7 34 34 H 1.09002 * 109.47344 * 299.99934 * 10 9 8 35 35 H 1.09004 * 109.47471 * 60.00183 * 10 9 8 36 36 H 1.09002 * 109.47089 * 300.00090 * 11 10 9 37 37 H 1.09001 * 109.47170 * 60.00310 * 11 10 9 38 38 H 0.97001 * 119.99899 * 180.02562 * 15 14 12 39 39 H 1.08002 * 119.61205 * 180.26679 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5945 1.1475 -0.0005 5 6 4.2255 -0.0823 -0.0016 6 6 5.7312 -0.1468 -0.0028 7 7 6.2162 -0.2890 1.3765 8 6 7.6832 -0.3560 1.4145 9 6 8.1497 -0.5042 2.8641 10 6 9.6775 -0.5745 2.9034 11 6 10.1441 -0.7221 4.3530 12 6 11.6491 -0.7907 4.3920 13 1 12.2161 -0.7351 3.4744 14 6 12.3021 -0.9256 5.5987 15 7 11.6116 -0.9938 6.7160 16 14 14.1675 -1.0099 5.6471 17 1 14.7216 0.3611 5.7831 18 1 14.5960 -1.8342 6.8056 19 1 14.6680 -1.6236 4.3908 20 7 3.5254 -1.1996 -0.0071 21 6 2.2066 -1.1916 -0.0014 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8901 0.5138 24 1 -0.3633 0.8899 0.5139 25 1 1.6889 2.1423 0.0004 26 1 4.1734 2.0592 -0.0001 27 1 6.0577 -1.0032 -0.5928 28 1 6.1338 0.7683 -0.4370 29 1 5.8061 -1.0958 1.8226 30 1 8.0229 -1.2140 0.8343 31 1 8.0997 0.5576 0.9900 32 1 7.8100 0.3536 3.4446 33 1 7.7333 -1.4179 3.2882 34 1 10.0169 -1.4325 2.3230 35 1 10.0944 0.3390 2.4792 36 1 9.8048 0.1362 4.9331 37 1 9.7273 -1.6353 4.7777 38 1 12.0710 -1.0883 7.5651 39 1 1.6672 -2.1273 -0.0018 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400892604.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:55 Heat of formation + Delta-G solvation = 3.443041 kcal Electronic energy + Delta-G solvation = -16557.590081 eV Core-core repulsion = 13884.748035 eV Total energy + Delta-G solvation = -2672.842046 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.50249 -36.80033 -34.59313 -33.52793 -32.43426 -31.74613 -29.21770 -27.38581 -25.11365 -23.94594 -23.29587 -21.55694 -21.31863 -19.94814 -17.06242 -16.50792 -16.11649 -15.66163 -15.32467 -14.99120 -14.47856 -14.25481 -14.14121 -13.66253 -13.20585 -12.91276 -12.88783 -12.54694 -12.30961 -12.17445 -11.78165 -11.53755 -11.31393 -10.96916 -10.52831 -10.47174 -10.38966 -9.99499 -9.64961 -9.58540 -9.24306 -9.06923 -8.93174 -8.37205 -8.29217 -5.94535 -3.96656 0.85215 1.07032 3.35053 3.40923 3.44500 3.48464 4.04150 4.40872 4.50040 4.52335 4.56077 4.67841 4.74315 5.10546 5.19307 5.23886 5.34187 5.40738 5.45116 5.49816 5.55952 5.61072 5.68342 5.94479 5.95734 6.00636 6.19442 6.27123 6.48418 6.55699 6.86887 6.98772 7.05240 7.26135 7.40551 7.74918 7.80013 7.91115 8.06900 8.49597 9.10949 9.66974 11.16847 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.062498 B = 0.002621 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.903962 B =10680.577518 C =10811.765276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.144 4.144 3 C -0.079 4.079 4 C -0.147 4.147 5 C 0.128 3.872 6 C 0.108 3.892 7 N -0.685 5.685 8 C 0.060 3.940 9 C -0.115 4.115 10 C -0.108 4.108 11 C 0.020 3.980 12 C -0.519 4.519 13 H 0.054 0.946 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 N -0.478 5.478 21 C 0.099 3.901 22 H 0.071 0.929 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.133 0.867 26 H 0.136 0.864 27 H 0.047 0.953 28 H 0.086 0.914 29 H 0.344 0.656 30 H 0.029 0.971 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.045 0.955 35 H 0.047 0.953 36 H 0.015 0.985 37 H 0.014 0.986 38 H 0.260 0.740 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.568 3.251 -15.544 26.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.146 4.146 3 C -0.105 4.105 4 C -0.167 4.167 5 C -0.009 4.009 6 C -0.022 4.022 7 N -0.317 5.317 8 C -0.069 4.069 9 C -0.153 4.153 10 C -0.147 4.147 11 C -0.017 4.017 12 C -0.558 4.558 13 H 0.072 0.928 14 C -0.146 4.146 15 N -0.536 5.536 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 N -0.187 5.187 21 C -0.059 4.059 22 H 0.090 0.910 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.151 0.849 26 H 0.154 0.846 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.162 0.838 30 H 0.047 0.953 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.034 0.966 37 H 0.033 0.967 38 H 0.069 0.931 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -21.099 3.105 -15.242 26.213 hybrid contribution 0.699 -0.116 -0.161 0.727 sum -20.400 2.989 -15.403 25.736 Atomic orbital electron populations 1.20709 0.90284 1.03160 1.02462 1.20931 0.97556 0.94348 1.01796 1.21496 0.94067 0.98151 0.96758 1.21972 0.94939 0.99213 1.00586 1.21178 0.96312 0.88471 0.94986 1.20790 0.87983 1.01987 0.91441 1.60583 1.08069 1.47896 1.15119 1.22104 0.85772 1.00335 0.98680 1.21636 0.97769 1.01856 0.94079 1.21588 0.91946 1.00093 1.01040 1.19098 0.95606 0.97081 0.89878 1.21295 0.92215 1.49665 0.92581 0.92763 1.25042 0.98261 0.95497 0.95816 1.69974 1.35260 1.50669 0.97689 0.86604 0.85961 0.77960 0.77530 1.20692 1.21261 1.19925 1.67481 1.08286 1.31249 1.11705 1.22622 0.89682 0.97466 0.96108 0.91018 0.91161 0.91352 0.84908 0.84571 0.93451 0.89536 0.83756 0.95302 0.91115 0.91653 0.92713 0.93630 0.93422 0.96613 0.96717 0.93070 0.82948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 10.04 36.00 0.36 -0.22 16 2 C -0.14 -1.21 5.90 -104.48 -0.62 -1.83 16 3 C -0.08 -0.67 9.86 -39.28 -0.39 -1.06 16 4 C -0.15 -1.46 9.72 -39.44 -0.38 -1.85 16 5 C 0.13 1.51 6.29 -82.58 -0.52 0.99 16 6 C 0.11 1.25 5.99 -4.97 -0.03 1.22 16 7 N -0.69 -9.28 6.49 -115.05 -0.75 -10.03 16 8 C 0.06 0.87 5.68 -3.82 -0.02 0.85 16 9 C -0.12 -2.04 5.47 -26.73 -0.15 -2.19 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 11 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 12 C -0.52 -15.14 9.11 -34.44 -0.31 -15.46 16 13 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 14 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.64 13.29 55.43 0.74 -26.90 16 16 Si 0.89 22.11 29.54 -169.99 -5.02 17.08 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 20 N -0.48 -5.89 10.27 -9.47 -0.10 -5.99 16 21 C 0.10 0.98 10.86 -17.55 -0.19 0.79 16 22 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 23 H 0.07 0.32 8.09 -51.92 -0.42 -0.10 16 24 H 0.07 0.32 8.10 -51.93 -0.42 -0.11 16 25 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 26 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.09 0.89 8.04 -51.93 -0.42 0.47 16 29 H 0.34 4.80 8.72 -39.29 -0.34 4.46 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.15 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 330.03 15.07 4.97 4.97 Total: -1.00 -32.17 330.03 -9.41 -41.58 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -6.64 Total: -1.45 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: -2.62 Total: -19.27 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: -0.11 Total: -42.92 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.17 -9.41 -41.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400892604.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.026 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds