Wall clock time and date at job start Mon Mar 30 2020 05:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38673 * 120.41889 * 2 1 4 4 C 1.38626 * 118.42181 * 180.02562 * 3 2 1 5 5 C 1.38230 * 119.15896 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.61573 * 179.97438 * 5 4 3 7 7 N 1.46902 * 109.46577 * 94.99896 * 6 5 4 8 8 C 1.46905 * 110.99800 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47234 * 180.02562 * 8 7 6 10 10 C 1.52995 * 109.46860 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.46860 * 179.97438 * 10 9 8 12 12 C 1.50705 * 109.47237 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00032 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00139 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99998 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00317 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46994 * 89.99485 * 16 14 12 18 18 H 1.48494 * 109.47584 * 209.99787 * 16 14 12 19 19 H 1.48506 * 109.46969 * 330.00161 * 16 14 12 20 20 N 1.31854 * 120.76756 * 0.25243 * 5 4 3 21 21 C 1.31892 * 121.72001 * 359.47021 * 20 5 4 22 22 H 1.09004 * 109.47531 * 89.99854 * 1 2 3 23 23 H 1.09007 * 109.47201 * 209.99847 * 1 2 3 24 24 H 1.08996 * 109.47162 * 329.99598 * 1 2 3 25 25 H 1.07998 * 120.78825 * 0.02562 * 3 2 1 26 26 H 1.07996 * 120.41975 * 180.02562 * 4 3 2 27 27 H 1.09000 * 109.47318 * 214.99404 * 6 5 4 28 28 H 1.09000 * 109.47161 * 335.00034 * 6 5 4 29 29 H 1.00898 * 110.99915 * 56.05080 * 7 6 5 30 30 H 1.09002 * 109.47091 * 300.00139 * 8 7 6 31 31 H 1.09001 * 109.46854 * 60.00166 * 8 7 6 32 32 H 1.09002 * 109.47089 * 300.00010 * 9 8 7 33 33 H 1.09001 * 109.47170 * 60.00230 * 9 8 7 34 34 H 1.09002 * 109.47344 * 299.99934 * 10 9 8 35 35 H 1.09004 * 109.47471 * 60.00183 * 10 9 8 36 36 H 1.09002 * 109.47089 * 300.00090 * 11 10 9 37 37 H 1.09001 * 109.47170 * 60.00310 * 11 10 9 38 38 H 0.97001 * 119.99899 * 180.02562 * 15 14 12 39 39 H 1.08002 * 119.61205 * 180.26679 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5945 1.1475 -0.0005 5 6 4.2255 -0.0823 -0.0016 6 6 5.7312 -0.1468 -0.0028 7 7 6.2162 -0.2890 1.3765 8 6 7.6832 -0.3560 1.4145 9 6 8.1497 -0.5042 2.8641 10 6 9.6775 -0.5745 2.9034 11 6 10.1441 -0.7221 4.3530 12 6 11.6491 -0.7907 4.3920 13 1 12.2161 -0.7351 3.4744 14 6 12.3021 -0.9256 5.5987 15 7 11.6116 -0.9938 6.7160 16 14 14.1675 -1.0099 5.6471 17 1 14.7216 0.3611 5.7831 18 1 14.5960 -1.8342 6.8056 19 1 14.6680 -1.6236 4.3908 20 7 3.5254 -1.1996 -0.0071 21 6 2.2066 -1.1916 -0.0014 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8901 0.5138 24 1 -0.3633 0.8899 0.5139 25 1 1.6889 2.1423 0.0004 26 1 4.1734 2.0592 -0.0001 27 1 6.0577 -1.0032 -0.5928 28 1 6.1338 0.7683 -0.4370 29 1 5.8061 -1.0958 1.8226 30 1 8.0229 -1.2140 0.8343 31 1 8.0997 0.5576 0.9900 32 1 7.8100 0.3536 3.4446 33 1 7.7333 -1.4179 3.2882 34 1 10.0169 -1.4325 2.3230 35 1 10.0944 0.3390 2.4792 36 1 9.8048 0.1362 4.9331 37 1 9.7273 -1.6353 4.7777 38 1 12.0710 -1.0883 7.5651 39 1 1.6672 -2.1273 -0.0018 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400892604.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:55 Heat of formation + Delta-G solvation = -16.703491 kcal Electronic energy + Delta-G solvation = -16558.463700 eV Core-core repulsion = 13884.748035 eV Total energy + Delta-G solvation = -2673.715665 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.22609 -37.98356 -36.10973 -34.73280 -33.82765 -32.83594 -30.56631 -28.59075 -26.44170 -25.12788 -24.19800 -22.86222 -22.33163 -21.65879 -18.45770 -17.82824 -17.22381 -16.77903 -16.53705 -16.04254 -15.93398 -15.60513 -14.89926 -14.73491 -14.34003 -14.06706 -13.80669 -13.59608 -13.41441 -13.37196 -13.09591 -12.87929 -12.83305 -12.41045 -12.23595 -12.20709 -12.09732 -11.37819 -11.30812 -11.02486 -10.70046 -10.55342 -10.39031 -9.77188 -9.40775 -8.19689 -6.31328 0.13107 0.36984 1.39584 1.41643 1.52766 2.41102 2.70864 3.12876 3.24558 3.50437 3.77314 3.95812 4.05912 4.10481 4.12521 4.20828 4.39416 4.51880 4.59865 4.65224 4.71309 4.78503 4.83350 4.84476 4.91391 4.94085 5.21148 5.22223 5.24517 5.27506 5.35268 5.37929 5.55223 5.77970 5.80924 5.86937 6.00221 6.25429 6.30093 6.86361 7.05095 7.37955 8.92330 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.062498 B = 0.002621 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.903962 B =10680.577518 C =10811.765276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.140 4.140 3 C -0.083 4.083 4 C -0.154 4.154 5 C 0.103 3.897 6 C 0.112 3.888 7 N -0.689 5.689 8 C 0.071 3.929 9 C -0.106 4.106 10 C -0.096 4.096 11 C 0.022 3.978 12 C -0.544 4.544 13 H 0.061 0.939 14 C -0.005 4.005 15 N -0.935 5.935 16 Si 0.968 3.032 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.262 1.262 20 N -0.508 5.508 21 C 0.080 3.920 22 H 0.084 0.916 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.160 0.840 26 H 0.149 0.851 27 H 0.042 0.958 28 H 0.101 0.899 29 H 0.340 0.660 30 H 0.034 0.966 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.050 0.950 35 H 0.054 0.946 36 H -0.011 1.011 37 H -0.012 1.012 38 H 0.263 0.737 39 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.978 3.950 -16.852 27.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.142 4.142 3 C -0.109 4.109 4 C -0.174 4.174 5 C -0.034 4.034 6 C -0.017 4.017 7 N -0.320 5.320 8 C -0.057 4.057 9 C -0.144 4.144 10 C -0.134 4.134 11 C -0.015 4.015 12 C -0.582 4.582 13 H 0.079 0.921 14 C -0.202 4.202 15 N -0.576 5.576 16 Si 0.792 3.208 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.187 1.187 20 N -0.218 5.218 21 C -0.077 4.077 22 H 0.102 0.898 23 H 0.097 0.903 24 H 0.098 0.902 25 H 0.178 0.822 26 H 0.167 0.833 27 H 0.060 0.940 28 H 0.119 0.881 29 H 0.157 0.843 30 H 0.052 0.948 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.008 0.992 37 H 0.006 0.994 38 H 0.072 0.928 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -21.519 3.811 -16.570 27.426 hybrid contribution 0.717 -0.334 0.261 0.833 sum -20.802 3.477 -16.309 26.661 Atomic orbital electron populations 1.20776 0.87939 1.04147 1.03522 1.21297 0.99240 0.93754 0.99955 1.21880 0.93701 0.99456 0.95873 1.22184 0.95912 0.99025 1.00273 1.21215 0.96207 0.89186 0.96799 1.20798 0.88520 1.02396 0.90029 1.60554 1.07187 1.47656 1.16606 1.21896 0.86666 1.01057 0.96125 1.21460 0.95287 1.01196 0.96412 1.21392 0.94312 1.00588 0.97123 1.19035 0.94936 0.94534 0.93038 1.21749 0.93505 1.49808 0.93123 0.92069 1.26055 1.04065 0.94804 0.95320 1.70114 1.37656 1.51386 0.98431 0.85404 0.78960 0.78418 0.78001 1.19634 1.20724 1.18661 1.67421 1.09608 1.32006 1.12747 1.23027 0.89247 0.99024 0.96391 0.89764 0.90346 0.90239 0.82211 0.83311 0.93999 0.88100 0.84261 0.94810 0.90098 0.92536 0.93307 0.93105 0.92693 0.99235 0.99392 0.92784 0.81311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.04 71.23 0.71 -0.15 16 2 C -0.14 -2.11 5.90 -19.78 -0.12 -2.23 16 3 C -0.08 -1.26 9.86 22.47 0.22 -1.04 16 4 C -0.15 -2.87 9.72 22.36 0.22 -2.65 16 5 C 0.10 2.37 6.29 42.56 0.27 2.64 16 6 C 0.11 2.54 5.99 85.56 0.51 3.05 16 7 N -0.69 -18.31 6.49 -517.90 -3.36 -21.68 16 8 C 0.07 2.01 5.68 86.30 0.49 2.50 16 9 C -0.11 -3.74 5.47 30.59 0.17 -3.57 16 10 C -0.10 -4.06 5.15 30.59 0.16 -3.91 16 11 C 0.02 1.20 4.97 29.85 0.15 1.34 16 12 C -0.54 -32.01 9.11 25.60 0.23 -31.77 16 13 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 14 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 15 N -0.94 -58.68 13.29 21.45 0.28 -58.40 16 16 Si 0.97 45.24 29.54 68.60 2.03 47.27 16 17 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 18 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 19 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 20 N -0.51 -12.44 10.27 -183.87 -1.89 -14.33 16 21 C 0.08 1.53 10.86 84.67 0.92 2.45 16 22 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 23 H 0.08 0.52 8.09 -2.38 -0.02 0.51 16 24 H 0.08 0.49 8.10 -2.39 -0.02 0.47 16 25 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 26 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 27 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.10 1.94 8.04 -2.39 -0.02 1.92 16 29 H 0.34 9.51 8.72 -89.70 -0.78 8.73 16 30 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 36 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 37 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 38 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 39 H 0.17 2.38 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -69.69 330.03 1.68 -68.01 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.22 Total: 12.31 kcal Atomic # 6 Polarization: -37.58 SS G_CDS: 4.40 Total: -33.18 kcal Atomic # 7 Polarization: -89.44 SS G_CDS: -4.97 Total: -94.40 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -69.69 1.68 -68.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400892604.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.302 kcal (2) G-P(sol) polarization free energy of solvation -69.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds