Wall clock time and date at job start Mon Mar 30 2020 05:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38673 * 120.41533 * 2 1 4 4 C 1.38633 * 118.41658 * 179.97438 * 3 2 1 5 5 C 1.38227 * 119.16140 * 359.97438 * 4 3 2 6 6 N 1.31855 * 120.76232 * 359.97438 * 5 4 3 7 7 C 1.31876 * 121.72800 * 359.70526 * 6 5 4 8 8 C 1.50698 * 119.62115 * 180.30759 * 7 6 5 9 9 C 1.53004 * 109.47611 * 270.27355 * 8 7 6 10 10 N 1.46497 * 109.47106 * 179.97438 * 9 8 7 11 11 C 1.36934 * 119.99494 * 269.99427 * 10 9 8 12 12 H 1.08001 * 119.99763 * 144.86423 * 11 10 9 13 13 C 1.38814 * 120.00589 * 324.86255 * 11 10 9 14 14 N 1.31619 * 120.00116 * 157.16100 * 13 11 10 15 15 Si 1.86803 * 119.99599 * 337.16171 * 13 11 10 16 16 H 1.48492 * 109.47118 * 95.35316 * 15 13 11 17 17 H 1.48500 * 109.46789 * 215.35387 * 15 13 11 18 18 H 1.48500 * 109.47069 * 335.34961 * 15 13 11 19 19 C 1.46495 * 120.00326 * 90.00210 * 10 9 8 20 20 C 1.53001 * 109.47361 * 121.91638 * 19 10 9 21 21 C 1.53001 * 109.46872 * 241.91411 * 19 10 9 22 22 H 1.09001 * 109.46878 * 90.00368 * 1 2 3 23 23 H 1.09000 * 109.47322 * 330.00334 * 1 2 3 24 24 H 1.09004 * 109.47545 * 209.99964 * 1 2 3 25 25 H 1.08001 * 120.79363 * 0.02562 * 3 2 1 26 26 H 1.07998 * 120.41544 * 179.97438 * 4 3 2 27 27 H 1.08006 * 119.61634 * 179.97438 * 5 4 3 28 28 H 1.09005 * 109.47167 * 30.27181 * 8 7 6 29 29 H 1.09000 * 109.47619 * 150.26748 * 8 7 6 30 30 H 1.09003 * 109.46762 * 299.99559 * 9 8 7 31 31 H 1.09000 * 109.47124 * 59.99091 * 9 8 7 32 32 H 0.97004 * 119.99688 * 179.97438 * 14 13 11 33 33 H 1.09007 * 109.46968 * 1.91260 * 19 10 9 34 34 H 1.08993 * 109.47068 * 65.32875 * 20 19 10 35 35 H 1.09004 * 109.46818 * 185.32621 * 20 19 10 36 36 H 1.09001 * 109.46893 * 305.32836 * 20 19 10 37 37 H 1.09006 * 109.47092 * 55.19260 * 21 19 10 38 38 H 1.09006 * 109.47142 * 175.18547 * 21 19 10 39 39 H 1.08994 * 109.47596 * 295.18578 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1959 0.0000 4 6 3.5945 1.1475 0.0005 5 6 4.2256 -0.0823 0.0016 6 7 3.5254 -1.1996 0.0026 7 6 2.2067 -1.1916 0.0084 8 6 1.4539 -2.4971 0.0163 9 6 1.1987 -2.9475 -1.4235 10 7 0.4675 -4.2169 -1.4156 11 6 1.1534 -5.4020 -1.4091 12 1 0.7622 -6.2494 -0.8656 13 6 2.3516 -5.5144 -2.1009 14 7 3.2243 -6.4388 -1.7599 15 14 2.7254 -4.3537 -3.5161 16 1 3.5366 -3.2133 -3.0198 17 1 3.4835 -5.0809 -4.5656 18 1 1.4530 -3.8444 -4.0877 19 6 -0.9975 -4.2185 -1.4150 20 6 -1.5072 -4.9888 -2.6347 21 6 -1.5061 -4.8906 -0.1381 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3634 0.8900 0.5138 24 1 -0.3634 -0.8900 0.5138 25 1 1.6889 2.1424 0.0004 26 1 4.1734 2.0593 0.0001 27 1 5.3046 -0.1285 0.0016 28 1 2.0436 -3.2534 0.5344 29 1 0.5016 -2.3644 0.5297 30 1 0.6089 -2.1913 -1.9416 31 1 2.1510 -3.0802 -1.9369 32 1 4.0614 -6.5176 -2.2436 33 1 -1.3619 -3.1919 -1.4552 34 1 -1.2228 -6.0374 -2.5470 35 1 -2.5932 -4.9101 -2.6863 36 1 -1.0689 -4.5679 -3.5395 37 1 -1.0743 -4.3938 0.7308 38 1 -2.5929 -4.8160 -0.0964 39 1 -1.2139 -5.9406 -0.1390 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404901558.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:27 Heat of formation + Delta-G solvation = 48.304701 kcal Electronic energy + Delta-G solvation = -18645.042101 eV Core-core repulsion = 15974.145403 eV Total energy + Delta-G solvation = -2670.896698 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.10769 -36.92819 -33.83015 -33.07433 -32.17439 -30.64978 -28.22453 -26.92304 -26.28575 -24.37635 -22.94655 -22.03872 -20.84872 -19.38673 -16.61724 -16.39211 -16.11399 -15.15720 -14.90360 -14.56525 -14.09672 -13.47299 -13.18324 -13.01519 -12.83334 -12.63349 -12.42876 -12.35881 -12.21753 -11.83184 -11.71477 -11.36976 -10.97461 -10.89726 -10.69776 -10.40680 -10.39612 -9.89313 -9.65721 -9.48592 -9.31586 -9.03761 -8.55524 -8.37457 -6.79257 -5.91118 -3.29311 1.33571 1.50399 3.42739 3.53535 3.56955 4.02752 4.59143 4.63457 4.84069 4.93371 5.10863 5.15291 5.22516 5.40804 5.54291 5.65561 5.72746 5.81689 5.90412 5.98756 6.03598 6.13481 6.19156 6.24357 6.30807 6.33968 6.34372 6.46139 6.56440 6.67279 6.73557 6.84066 6.91296 7.09384 7.13324 7.18269 8.12584 8.37634 8.46579 9.06655 9.81077 10.19325 11.24555 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019733 B = 0.008717 C = 0.006878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.633801 B = 3211.317046 C = 4070.020820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.143 4.143 3 C -0.080 4.080 4 C -0.189 4.189 5 C 0.094 3.906 6 N -0.474 5.474 7 C 0.147 3.853 8 C -0.094 4.094 9 C 0.149 3.851 10 N -0.599 5.599 11 C -0.262 4.262 12 H 0.082 0.918 13 C 0.039 3.961 14 N -0.898 5.898 15 Si 0.871 3.129 16 H -0.283 1.283 17 H -0.305 1.305 18 H -0.272 1.272 19 C 0.166 3.834 20 C -0.152 4.152 21 C -0.154 4.154 22 H 0.071 0.929 23 H 0.062 0.938 24 H 0.077 0.923 25 H 0.128 0.872 26 H 0.128 0.872 27 H 0.150 0.850 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.036 0.964 31 H 0.058 0.942 32 H 0.262 0.738 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.036 0.964 36 H 0.046 0.954 37 H 0.047 0.953 38 H 0.037 0.963 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.447 14.327 3.071 15.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.145 4.145 3 C -0.106 4.106 4 C -0.209 4.209 5 C -0.064 4.064 6 N -0.183 5.183 7 C 0.008 3.992 8 C -0.134 4.134 9 C 0.023 3.977 10 N -0.321 5.321 11 C -0.390 4.390 12 H 0.099 0.901 13 C -0.161 4.161 14 N -0.539 5.539 15 Si 0.702 3.298 16 H -0.211 1.211 17 H -0.233 1.233 18 H -0.197 1.197 19 C 0.060 3.940 20 C -0.211 4.211 21 C -0.213 4.213 22 H 0.090 0.910 23 H 0.081 0.919 24 H 0.096 0.904 25 H 0.146 0.854 26 H 0.146 0.854 27 H 0.168 0.832 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.865 13.400 3.021 14.572 hybrid contribution 0.179 1.556 -0.858 1.786 sum -4.686 14.955 2.163 15.821 Atomic orbital electron populations 1.20793 0.90444 1.02920 1.02611 1.20761 0.97558 0.93633 1.02584 1.21387 0.94146 0.97744 0.97272 1.22014 0.95253 0.99328 1.04347 1.22760 1.00235 0.87817 0.95549 1.67644 1.08141 1.31061 1.11406 1.21541 0.89506 0.95438 0.92676 1.21371 0.98424 0.91543 1.02047 1.21121 0.96575 0.87494 0.92524 1.44261 1.00042 1.01829 1.85934 1.18662 1.03628 0.90414 1.26292 0.90097 1.25357 0.96790 0.96215 0.97749 1.69866 1.07794 1.36010 1.40254 0.87015 0.77940 0.80615 0.84215 1.21093 1.23295 1.19693 1.20398 0.84170 0.96334 0.93125 1.22118 0.97725 1.02236 0.98991 1.22174 0.98089 1.02153 0.98883 0.91005 0.91916 0.90441 0.85420 0.85395 0.83249 0.89253 0.90744 0.94608 0.92448 0.92820 0.93323 0.92029 0.94503 0.93534 0.93391 0.94384 0.92411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 9.63 36.01 0.35 -0.98 16 2 C -0.14 -2.14 5.90 -104.48 -0.62 -2.76 16 3 C -0.08 -1.03 9.86 -39.27 -0.39 -1.41 16 4 C -0.19 -2.43 10.11 -39.44 -0.40 -2.83 16 5 C 0.09 1.46 11.18 -17.55 -0.20 1.26 16 6 N -0.47 -9.30 10.27 -9.47 -0.10 -9.39 16 7 C 0.15 2.71 6.03 -82.59 -0.50 2.21 16 8 C -0.09 -1.85 5.42 -27.88 -0.15 -2.00 16 9 C 0.15 3.30 4.47 -4.04 -0.02 3.28 16 10 N -0.60 -13.89 2.06 -165.66 -0.34 -14.23 16 11 C -0.26 -7.17 8.74 -15.06 -0.13 -7.30 16 12 H 0.08 2.38 7.17 -52.49 -0.38 2.01 16 13 C 0.04 1.15 5.31 -17.43 -0.09 1.05 16 14 N -0.90 -27.80 13.97 55.49 0.78 -27.02 16 15 Si 0.87 23.06 24.97 -169.99 -4.24 18.81 16 16 H -0.28 -7.57 6.66 56.52 0.38 -7.20 16 17 H -0.30 -8.19 7.11 56.52 0.40 -7.78 16 18 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 19 C 0.17 3.20 3.36 -67.93 -0.23 2.97 16 20 C -0.15 -2.85 9.04 37.16 0.34 -2.51 16 21 C -0.15 -2.71 9.11 37.16 0.34 -2.37 16 22 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 23 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 24 H 0.08 0.95 5.95 -51.93 -0.31 0.64 16 25 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 26 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 27 H 0.15 1.91 8.06 -52.48 -0.42 1.49 16 28 H 0.09 2.04 8.14 -51.93 -0.42 1.61 16 29 H 0.07 1.29 5.94 -51.93 -0.31 0.98 16 30 H 0.04 0.72 7.91 -51.93 -0.41 0.31 16 31 H 0.06 1.45 2.97 -51.93 -0.15 1.30 16 32 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 33 H 0.05 0.84 7.78 -51.93 -0.40 0.43 16 34 H 0.06 1.25 7.80 -51.93 -0.40 0.84 16 35 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.06 1.12 7.25 -51.93 -0.38 0.74 16 LS Contribution 312.52 15.07 4.71 4.71 Total: -1.00 -31.88 312.52 -7.03 -38.91 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -6.13 Total: -0.39 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -1.70 Total: -11.40 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: 0.34 Total: -50.65 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -4.24 Total: 18.81 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.88 -7.03 -38.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404901558.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.212 kcal (2) G-P(sol) polarization free energy of solvation -31.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds