Wall clock time and date at job start Mon Mar 30 2020 05:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38673 * 120.41533 * 2 1 4 4 C 1.38633 * 118.41658 * 179.97438 * 3 2 1 5 5 C 1.38227 * 119.16140 * 359.97438 * 4 3 2 6 6 N 1.31855 * 120.76232 * 359.97438 * 5 4 3 7 7 C 1.31876 * 121.72800 * 359.70526 * 6 5 4 8 8 C 1.50698 * 119.62115 * 180.30759 * 7 6 5 9 9 C 1.53004 * 109.47611 * 270.27355 * 8 7 6 10 10 N 1.46497 * 109.47106 * 179.97438 * 9 8 7 11 11 C 1.36934 * 119.99494 * 269.99427 * 10 9 8 12 12 H 1.08001 * 119.99763 * 144.86423 * 11 10 9 13 13 C 1.38814 * 120.00589 * 324.86255 * 11 10 9 14 14 N 1.31619 * 120.00116 * 157.16100 * 13 11 10 15 15 Si 1.86803 * 119.99599 * 337.16171 * 13 11 10 16 16 H 1.48492 * 109.47118 * 95.35316 * 15 13 11 17 17 H 1.48500 * 109.46789 * 215.35387 * 15 13 11 18 18 H 1.48500 * 109.47069 * 335.34961 * 15 13 11 19 19 C 1.46495 * 120.00326 * 90.00210 * 10 9 8 20 20 C 1.53001 * 109.47361 * 121.91638 * 19 10 9 21 21 C 1.53001 * 109.46872 * 241.91411 * 19 10 9 22 22 H 1.09001 * 109.46878 * 90.00368 * 1 2 3 23 23 H 1.09000 * 109.47322 * 330.00334 * 1 2 3 24 24 H 1.09004 * 109.47545 * 209.99964 * 1 2 3 25 25 H 1.08001 * 120.79363 * 0.02562 * 3 2 1 26 26 H 1.07998 * 120.41544 * 179.97438 * 4 3 2 27 27 H 1.08006 * 119.61634 * 179.97438 * 5 4 3 28 28 H 1.09005 * 109.47167 * 30.27181 * 8 7 6 29 29 H 1.09000 * 109.47619 * 150.26748 * 8 7 6 30 30 H 1.09003 * 109.46762 * 299.99559 * 9 8 7 31 31 H 1.09000 * 109.47124 * 59.99091 * 9 8 7 32 32 H 0.97004 * 119.99688 * 179.97438 * 14 13 11 33 33 H 1.09007 * 109.46968 * 1.91260 * 19 10 9 34 34 H 1.08993 * 109.47068 * 65.32875 * 20 19 10 35 35 H 1.09004 * 109.46818 * 185.32621 * 20 19 10 36 36 H 1.09001 * 109.46893 * 305.32836 * 20 19 10 37 37 H 1.09006 * 109.47092 * 55.19260 * 21 19 10 38 38 H 1.09006 * 109.47142 * 175.18547 * 21 19 10 39 39 H 1.08994 * 109.47596 * 295.18578 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1959 0.0000 4 6 3.5945 1.1475 0.0005 5 6 4.2256 -0.0823 0.0016 6 7 3.5254 -1.1996 0.0026 7 6 2.2067 -1.1916 0.0084 8 6 1.4539 -2.4971 0.0163 9 6 1.1987 -2.9475 -1.4235 10 7 0.4675 -4.2169 -1.4156 11 6 1.1534 -5.4020 -1.4091 12 1 0.7622 -6.2494 -0.8656 13 6 2.3516 -5.5144 -2.1009 14 7 3.2243 -6.4388 -1.7599 15 14 2.7254 -4.3537 -3.5161 16 1 3.5366 -3.2133 -3.0198 17 1 3.4835 -5.0809 -4.5656 18 1 1.4530 -3.8444 -4.0877 19 6 -0.9975 -4.2185 -1.4150 20 6 -1.5072 -4.9888 -2.6347 21 6 -1.5061 -4.8906 -0.1381 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3634 0.8900 0.5138 24 1 -0.3634 -0.8900 0.5138 25 1 1.6889 2.1424 0.0004 26 1 4.1734 2.0593 0.0001 27 1 5.3046 -0.1285 0.0016 28 1 2.0436 -3.2534 0.5344 29 1 0.5016 -2.3644 0.5297 30 1 0.6089 -2.1913 -1.9416 31 1 2.1510 -3.0802 -1.9369 32 1 4.0614 -6.5176 -2.2436 33 1 -1.3619 -3.1919 -1.4552 34 1 -1.2228 -6.0374 -2.5470 35 1 -2.5932 -4.9101 -2.6863 36 1 -1.0689 -4.5679 -3.5395 37 1 -1.0743 -4.3938 0.7308 38 1 -2.5929 -4.8160 -0.0964 39 1 -1.2139 -5.9406 -0.1390 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404901558.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:27 Heat of formation + Delta-G solvation = 28.331188 kcal Electronic energy + Delta-G solvation = -18645.908218 eV Core-core repulsion = 15974.145403 eV Total energy + Delta-G solvation = -2671.762815 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.28798 -38.66479 -35.11094 -34.36943 -34.09734 -32.25147 -29.77263 -28.05027 -27.76172 -26.21670 -24.52069 -23.22606 -22.16739 -21.16981 -18.40703 -17.84207 -17.33880 -17.02919 -16.49370 -15.74421 -15.42596 -15.17579 -14.80132 -14.56086 -14.07993 -14.03360 -13.78607 -13.67564 -13.56406 -13.48746 -13.11429 -12.89661 -12.62301 -12.60061 -12.25526 -12.09920 -12.02053 -11.72880 -11.41649 -11.18669 -10.64065 -10.55396 -10.24735 -9.69940 -8.74082 -8.16803 -5.48855 0.19953 0.42142 1.29267 1.33329 1.43654 2.42936 2.83175 3.06067 3.31572 3.56290 3.90460 3.99198 4.04973 4.17250 4.27040 4.32612 4.44963 4.57107 4.66953 4.68280 4.71498 4.78382 4.86549 4.88973 4.97914 5.03450 5.12259 5.15944 5.19511 5.22057 5.28716 5.38369 5.46423 5.59749 5.66447 5.90374 6.00007 6.24877 7.04224 7.19587 7.71159 8.10726 9.03461 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019733 B = 0.008717 C = 0.006878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.633801 B = 3211.317046 C = 4070.020820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.141 4.141 3 C -0.077 4.077 4 C -0.171 4.171 5 C 0.069 3.931 6 N -0.530 5.530 7 C 0.109 3.891 8 C -0.077 4.077 9 C 0.149 3.851 10 N -0.610 5.610 11 C -0.230 4.230 12 H 0.050 0.950 13 C -0.020 4.020 14 N -0.949 5.949 15 Si 0.933 3.067 16 H -0.294 1.294 17 H -0.314 1.314 18 H -0.256 1.256 19 C 0.156 3.844 20 C -0.147 4.147 21 C -0.146 4.146 22 H 0.080 0.920 23 H 0.093 0.907 24 H 0.071 0.929 25 H 0.171 0.829 26 H 0.169 0.831 27 H 0.164 0.836 28 H 0.041 0.959 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.023 0.977 32 H 0.258 0.742 33 H 0.083 0.917 34 H 0.034 0.966 35 H 0.077 0.923 36 H 0.032 0.968 37 H 0.044 0.956 38 H 0.076 0.924 39 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.846 18.406 2.959 20.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.143 4.143 3 C -0.102 4.102 4 C -0.190 4.190 5 C -0.088 4.088 6 N -0.239 5.239 7 C -0.029 4.029 8 C -0.117 4.117 9 C 0.023 3.977 10 N -0.333 5.333 11 C -0.360 4.360 12 H 0.068 0.932 13 C -0.216 4.216 14 N -0.595 5.595 15 Si 0.764 3.236 16 H -0.222 1.222 17 H -0.244 1.244 18 H -0.180 1.180 19 C 0.051 3.949 20 C -0.206 4.206 21 C -0.205 4.205 22 H 0.098 0.902 23 H 0.112 0.888 24 H 0.089 0.911 25 H 0.189 0.811 26 H 0.187 0.813 27 H 0.182 0.818 28 H 0.060 0.940 29 H 0.116 0.884 30 H 0.082 0.918 31 H 0.041 0.959 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.053 0.947 35 H 0.096 0.904 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.095 0.905 39 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -7.313 17.516 2.908 19.202 hybrid contribution 0.870 0.400 -0.708 1.191 sum -6.443 17.916 2.200 19.166 Atomic orbital electron populations 1.20871 0.88202 1.04181 1.03431 1.21064 0.99195 0.92963 1.01055 1.21916 0.94234 0.98615 0.95455 1.22457 0.95882 0.99537 1.01174 1.23163 1.01101 0.88194 0.96359 1.67480 1.09424 1.33806 1.13195 1.21362 0.89544 0.95872 0.96093 1.21043 0.99067 0.91620 0.99972 1.21080 0.95169 0.87457 0.94002 1.44434 1.01914 1.00806 1.86121 1.18541 1.02888 0.91094 1.23510 0.93196 1.25880 0.97359 0.98060 1.00263 1.69986 1.08569 1.38929 1.42001 0.86013 0.77886 0.78319 0.81342 1.22243 1.24350 1.18021 1.20737 0.81464 0.98662 0.94000 1.22067 1.00310 1.00188 0.98000 1.22071 1.00508 0.99987 0.97889 0.90186 0.88826 0.91054 0.81129 0.81337 0.81834 0.94049 0.88382 0.91829 0.95947 0.93341 0.89856 0.94718 0.90417 0.94831 0.93669 0.90493 0.95261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.16 9.63 71.24 0.69 -1.47 16 2 C -0.14 -3.77 5.90 -19.77 -0.12 -3.89 16 3 C -0.08 -1.62 9.86 22.47 0.22 -1.40 16 4 C -0.17 -3.75 10.11 22.36 0.23 -3.52 16 5 C 0.07 2.07 11.18 84.69 0.95 3.01 16 6 N -0.53 -21.09 10.27 -183.89 -1.89 -22.98 16 7 C 0.11 3.96 6.03 42.54 0.26 4.21 16 8 C -0.08 -3.06 5.42 29.85 0.16 -2.90 16 9 C 0.15 6.50 4.47 86.38 0.39 6.89 16 10 N -0.61 -28.20 2.06 -678.03 -1.40 -29.60 16 11 C -0.23 -13.08 8.74 84.03 0.73 -12.35 16 12 H 0.05 3.11 7.17 -2.91 -0.02 3.09 16 13 C -0.02 -1.22 5.31 84.86 0.45 -0.77 16 14 N -0.95 -62.10 13.97 21.65 0.30 -61.80 16 15 Si 0.93 49.86 24.97 68.60 1.71 51.57 16 16 H -0.29 -16.03 6.66 99.48 0.66 -15.36 16 17 H -0.31 -17.02 7.11 99.48 0.71 -16.31 16 18 H -0.26 -12.78 7.11 99.48 0.71 -12.07 16 19 C 0.16 5.66 3.36 44.99 0.15 5.82 16 20 C -0.15 -5.20 9.04 71.98 0.65 -4.55 16 21 C -0.15 -4.87 9.11 71.98 0.66 -4.21 16 22 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.09 1.27 8.10 -2.39 -0.02 1.25 16 24 H 0.07 1.49 5.95 -2.38 -0.01 1.47 16 25 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 26 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 27 H 0.16 4.10 8.06 -2.91 -0.02 4.08 16 28 H 0.04 2.00 8.14 -2.38 -0.02 1.98 16 29 H 0.10 3.30 5.94 -2.39 -0.01 3.29 16 30 H 0.06 2.40 7.91 -2.39 -0.02 2.38 16 31 H 0.02 1.16 2.97 -2.39 -0.01 1.15 16 32 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 33 H 0.08 2.50 7.78 -2.38 -0.02 2.48 16 34 H 0.03 1.38 7.80 -2.39 -0.02 1.37 16 35 H 0.08 2.10 8.14 -2.38 -0.02 2.09 16 36 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 39 H 0.03 1.12 7.25 -2.39 -0.02 1.10 16 Total: -1.00 -75.12 312.52 5.11 -70.01 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 0.97 Total: 7.92 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: 5.41 Total: -15.12 kcal Atomic # 7 Polarization: -111.39 SS G_CDS: -2.99 Total: -114.38 kcal Atomic # 14 Polarization: 49.86 SS G_CDS: 1.71 Total: 51.57 kcal Total: -75.12 5.11 -70.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404901558.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.342 kcal (2) G-P(sol) polarization free energy of solvation -75.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds