Wall clock time and date at job start Mon Mar 30 2020 05:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38674 * 120.41890 * 2 1 4 4 C 1.38634 * 118.41804 * 180.24091 * 3 2 1 5 5 C 1.38227 * 119.16152 * 359.75295 * 4 3 2 6 6 N 1.31860 * 120.76193 * 359.97438 * 5 4 3 7 7 C 1.31880 * 121.72660 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.61424 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47238 * 90.00125 * 8 7 6 10 10 N 1.46896 * 109.47114 * 179.97438 * 9 8 7 11 11 C 1.46904 * 111.00005 * 66.04364 * 10 9 8 12 12 C 1.46901 * 111.00115 * 190.00001 * 10 9 8 13 13 H 1.08994 * 109.47613 * 54.99975 * 12 10 9 14 14 C 1.53003 * 109.46896 * 295.00035 * 12 10 9 15 15 C 1.50701 * 109.47161 * 175.00275 * 12 10 9 16 16 H 1.08006 * 120.00040 * 359.97438 * 15 12 10 17 17 C 1.37878 * 120.00140 * 180.02562 * 15 12 10 18 18 N 1.31517 * 119.99814 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 120.00148 * 180.02562 * 17 15 12 20 20 H 1.48492 * 109.47210 * 59.99641 * 19 17 15 21 21 H 1.48495 * 109.46905 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46861 * 299.99530 * 19 17 15 23 23 H 1.08999 * 109.47456 * 270.25759 * 1 2 3 24 24 H 1.09003 * 109.47024 * 30.25213 * 1 2 3 25 25 H 1.08996 * 109.47417 * 150.24938 * 1 2 3 26 26 H 1.07991 * 120.79357 * 0.02562 * 3 2 1 27 27 H 1.07999 * 120.42112 * 179.72942 * 4 3 2 28 28 H 1.07993 * 119.61732 * 180.02562 * 5 4 3 29 29 H 1.09001 * 109.46953 * 209.99737 * 8 7 6 30 30 H 1.09000 * 109.47318 * 329.99335 * 8 7 6 31 31 H 1.09001 * 109.46832 * 299.99686 * 9 8 7 32 32 H 1.09004 * 109.47261 * 59.99705 * 9 8 7 33 33 H 1.09001 * 109.46714 * 60.00094 * 11 10 9 34 34 H 1.09000 * 109.47175 * 179.97438 * 11 10 9 35 35 H 1.08997 * 109.47401 * 300.00498 * 11 10 9 36 36 H 1.09003 * 109.47148 * 299.99809 * 14 12 10 37 37 H 1.09000 * 109.46958 * 60.00118 * 14 12 10 38 38 H 1.08999 * 109.47252 * 180.02562 * 14 12 10 39 39 H 0.96997 * 119.99872 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5946 1.1475 -0.0051 5 6 4.2256 -0.0824 -0.0048 6 7 3.5254 -1.1997 0.0008 7 6 2.2066 -1.1916 0.0057 8 6 1.4539 -2.4972 0.0114 9 6 1.2046 -2.9359 1.4558 10 7 0.4704 -4.2082 1.4613 11 6 1.2906 -5.2918 0.9035 12 6 0.0062 -4.5423 2.8144 13 1 -0.5830 -3.7156 3.2110 14 6 1.2136 -4.7890 3.7213 15 6 -0.8442 -5.7853 2.7612 16 1 -1.0225 -6.2776 1.8165 17 6 -1.3957 -6.2935 3.9182 18 7 -1.1790 -5.6937 5.0684 19 14 -2.4493 -7.8345 3.8522 20 1 -1.6457 -8.9608 3.3130 21 1 -2.9195 -8.1715 5.2199 22 1 -3.6207 -7.5958 2.9713 23 1 -0.3634 0.0046 1.0276 24 1 -0.3633 0.8877 -0.5178 25 1 -0.3634 -0.8922 -0.5099 26 1 1.6891 2.1423 0.0004 27 1 4.1737 2.0591 -0.0097 28 1 5.3046 -0.1287 -0.0084 29 1 0.4994 -2.3685 -0.4990 30 1 2.0414 -3.2576 -0.5031 31 1 2.1591 -3.0646 1.9663 32 1 0.6170 -2.1755 1.9703 33 1 2.1948 -5.4075 1.5011 34 1 0.7232 -6.2223 0.9199 35 1 1.5627 -5.0497 -0.1238 36 1 1.8029 -5.6159 3.3248 37 1 1.8288 -3.8900 3.7599 38 1 0.8693 -5.0374 4.7252 39 1 -1.5666 -6.0515 5.8825 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404904496.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:02 Heat of formation + Delta-G solvation = 32.445471 kcal Electronic energy + Delta-G solvation = -18056.723778 eV Core-core repulsion = 15385.139372 eV Total energy + Delta-G solvation = -2671.584406 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.33165 -37.31623 -34.05671 -33.31656 -32.33730 -29.70835 -28.00812 -27.13028 -25.48129 -25.06755 -23.02897 -22.12116 -20.86126 -19.03775 -16.78814 -16.40510 -16.10303 -15.22947 -14.69923 -14.52054 -14.27824 -13.87274 -13.38531 -13.11485 -13.03485 -12.70763 -12.55451 -12.38874 -11.97113 -11.69494 -11.29851 -11.13757 -10.98896 -10.71736 -10.64775 -10.59860 -10.14146 -9.97133 -9.81350 -9.63402 -9.33154 -8.86428 -8.65515 -8.35105 -7.09871 -5.97389 -4.01063 1.13448 1.29929 3.35022 3.39098 3.42045 3.80203 4.35641 4.45892 4.72225 4.78938 4.95147 5.02981 5.23449 5.34580 5.42081 5.53159 5.60981 5.68440 5.74823 5.86858 6.05044 6.09246 6.15315 6.24596 6.30344 6.44024 6.56177 6.57288 6.73809 6.80068 6.90149 6.97932 7.18738 7.54333 7.76644 7.87171 8.08977 8.16657 8.43148 8.64622 9.04726 9.63712 11.09768 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.040285 B = 0.004599 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.881099 B = 6086.826120 C = 6211.236901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.132 4.132 3 C -0.079 4.079 4 C -0.182 4.182 5 C 0.091 3.909 6 N -0.480 5.480 7 C 0.141 3.859 8 C -0.072 4.072 9 C 0.067 3.933 10 N -0.535 5.535 11 C 0.032 3.968 12 C 0.211 3.789 13 H 0.038 0.962 14 C -0.172 4.172 15 C -0.499 4.499 16 H 0.062 0.938 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.897 3.103 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.277 1.277 23 H 0.077 0.923 24 H 0.063 0.937 25 H 0.080 0.920 26 H 0.131 0.869 27 H 0.130 0.870 28 H 0.151 0.849 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.029 0.971 32 H 0.063 0.937 33 H 0.016 0.984 34 H 0.073 0.927 35 H 0.043 0.957 36 H 0.030 0.970 37 H 0.006 0.994 38 H 0.087 0.913 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.614 12.321 -9.534 16.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.134 4.134 3 C -0.105 4.105 4 C -0.202 4.202 5 C -0.066 4.066 6 N -0.188 5.188 7 C 0.003 3.997 8 C -0.111 4.111 9 C -0.062 4.062 10 N -0.258 5.258 11 C -0.116 4.116 12 C 0.105 3.895 13 H 0.056 0.944 14 C -0.231 4.231 15 C -0.538 4.538 16 H 0.081 0.919 17 C -0.143 4.143 18 N -0.535 5.535 19 Si 0.725 3.275 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.202 1.202 23 H 0.096 0.904 24 H 0.082 0.918 25 H 0.098 0.902 26 H 0.149 0.851 27 H 0.148 0.852 28 H 0.169 0.831 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.047 0.953 32 H 0.082 0.918 33 H 0.035 0.965 34 H 0.092 0.908 35 H 0.062 0.938 36 H 0.049 0.951 37 H 0.025 0.975 38 H 0.106 0.894 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.581 11.549 -9.633 16.416 hybrid contribution -0.063 0.058 0.691 0.696 sum 6.519 11.607 -8.942 16.037 Atomic orbital electron populations 1.20850 0.89984 1.03183 1.03210 1.20799 0.97840 0.93486 1.01229 1.21456 0.94145 0.97993 0.96902 1.22059 0.95293 0.99448 1.03430 1.22704 1.00145 0.87799 0.95960 1.67547 1.08012 1.31355 1.11914 1.21305 0.89458 0.95226 0.93737 1.20699 0.99179 0.91763 0.99422 1.21861 0.96963 0.93914 0.93498 1.62340 1.36676 1.00742 1.26080 1.22267 0.95897 0.96345 0.97105 1.19293 0.92005 0.96747 0.81433 0.94428 1.22396 0.98535 0.96957 1.05212 1.21095 1.29475 1.09647 0.93573 0.91943 1.24930 0.96575 0.97374 0.95424 1.69883 1.45062 1.40232 0.98290 0.86585 0.80755 0.83318 0.76876 1.20383 1.21448 1.20243 0.90441 0.91755 0.90163 0.85135 0.85195 0.83128 0.89312 0.90234 0.95330 0.91812 0.96543 0.90787 0.93794 0.95105 0.97473 0.89449 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 9.62 36.01 0.35 -0.94 16 2 C -0.13 -1.70 5.90 -104.48 -0.62 -2.31 16 3 C -0.08 -0.87 9.86 -39.27 -0.39 -1.26 16 4 C -0.18 -1.92 10.11 -39.44 -0.40 -2.31 16 5 C 0.09 1.12 11.18 -17.54 -0.20 0.92 16 6 N -0.48 -7.40 10.27 -9.47 -0.10 -7.50 16 7 C 0.14 2.12 6.03 -82.59 -0.50 1.62 16 8 C -0.07 -1.15 5.03 -27.88 -0.14 -1.29 16 9 C 0.07 1.27 4.38 -3.83 -0.02 1.25 16 10 N -0.53 -11.62 4.74 -236.28 -1.12 -12.74 16 11 C 0.03 0.65 8.56 60.07 0.51 1.17 16 12 C 0.21 5.38 2.34 -68.86 -0.16 5.22 16 13 H 0.04 1.05 8.03 -51.93 -0.42 0.63 16 14 C -0.17 -4.29 8.28 37.16 0.31 -3.98 16 15 C -0.50 -13.69 7.88 -34.44 -0.27 -13.96 16 16 H 0.06 1.70 6.77 -52.48 -0.36 1.35 16 17 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 18 N -0.90 -25.65 11.32 55.43 0.63 -25.02 16 19 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 25 H 0.08 0.92 5.96 -51.93 -0.31 0.61 16 26 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 27 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 28 H 0.15 1.42 8.06 -52.49 -0.42 0.99 16 29 H 0.09 1.31 5.93 -51.93 -0.31 1.00 16 30 H 0.08 1.29 6.55 -51.93 -0.34 0.95 16 31 H 0.03 0.58 6.94 -51.93 -0.36 0.22 16 32 H 0.06 1.21 8.00 -51.93 -0.42 0.80 16 33 H 0.02 0.33 6.51 -51.93 -0.34 0.00 16 34 H 0.07 1.58 6.41 -51.93 -0.33 1.25 16 35 H 0.04 0.77 6.47 -51.93 -0.34 0.43 16 36 H 0.03 0.75 6.47 -51.93 -0.34 0.41 16 37 H 0.01 0.15 6.75 -51.93 -0.35 -0.20 16 38 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 39 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 307.26 15.07 4.63 4.63 Total: -1.00 -29.89 307.26 -8.36 -38.25 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -5.76 Total: 0.37 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -1.61 Total: -14.36 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: -0.59 Total: -45.26 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.89 -8.36 -38.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404904496.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.691 kcal (2) G-P(sol) polarization free energy of solvation -29.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds