Wall clock time and date at job start Mon Mar 30 2020 05:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38674 * 120.41890 * 2 1 4 4 C 1.38634 * 118.41804 * 180.24091 * 3 2 1 5 5 C 1.38227 * 119.16152 * 359.75295 * 4 3 2 6 6 N 1.31860 * 120.76193 * 359.97438 * 5 4 3 7 7 C 1.31880 * 121.72660 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.61424 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47238 * 90.00125 * 8 7 6 10 10 N 1.46896 * 109.47114 * 179.97438 * 9 8 7 11 11 C 1.46904 * 111.00005 * 66.04364 * 10 9 8 12 12 C 1.46901 * 111.00115 * 190.00001 * 10 9 8 13 13 H 1.08994 * 109.47613 * 54.99975 * 12 10 9 14 14 C 1.53003 * 109.46896 * 295.00035 * 12 10 9 15 15 C 1.50701 * 109.47161 * 175.00275 * 12 10 9 16 16 H 1.08006 * 120.00040 * 359.97438 * 15 12 10 17 17 C 1.37878 * 120.00140 * 180.02562 * 15 12 10 18 18 N 1.31517 * 119.99814 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 120.00148 * 180.02562 * 17 15 12 20 20 H 1.48492 * 109.47210 * 59.99641 * 19 17 15 21 21 H 1.48495 * 109.46905 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46861 * 299.99530 * 19 17 15 23 23 H 1.08999 * 109.47456 * 270.25759 * 1 2 3 24 24 H 1.09003 * 109.47024 * 30.25213 * 1 2 3 25 25 H 1.08996 * 109.47417 * 150.24938 * 1 2 3 26 26 H 1.07991 * 120.79357 * 0.02562 * 3 2 1 27 27 H 1.07999 * 120.42112 * 179.72942 * 4 3 2 28 28 H 1.07993 * 119.61732 * 180.02562 * 5 4 3 29 29 H 1.09001 * 109.46953 * 209.99737 * 8 7 6 30 30 H 1.09000 * 109.47318 * 329.99335 * 8 7 6 31 31 H 1.09001 * 109.46832 * 299.99686 * 9 8 7 32 32 H 1.09004 * 109.47261 * 59.99705 * 9 8 7 33 33 H 1.09001 * 109.46714 * 60.00094 * 11 10 9 34 34 H 1.09000 * 109.47175 * 179.97438 * 11 10 9 35 35 H 1.08997 * 109.47401 * 300.00498 * 11 10 9 36 36 H 1.09003 * 109.47148 * 299.99809 * 14 12 10 37 37 H 1.09000 * 109.46958 * 60.00118 * 14 12 10 38 38 H 1.08999 * 109.47252 * 180.02562 * 14 12 10 39 39 H 0.96997 * 119.99872 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5946 1.1475 -0.0051 5 6 4.2256 -0.0824 -0.0048 6 7 3.5254 -1.1997 0.0008 7 6 2.2066 -1.1916 0.0057 8 6 1.4539 -2.4972 0.0114 9 6 1.2046 -2.9359 1.4558 10 7 0.4704 -4.2082 1.4613 11 6 1.2906 -5.2918 0.9035 12 6 0.0062 -4.5423 2.8144 13 1 -0.5830 -3.7156 3.2110 14 6 1.2136 -4.7890 3.7213 15 6 -0.8442 -5.7853 2.7612 16 1 -1.0225 -6.2776 1.8165 17 6 -1.3957 -6.2935 3.9182 18 7 -1.1790 -5.6937 5.0684 19 14 -2.4493 -7.8345 3.8522 20 1 -1.6457 -8.9608 3.3130 21 1 -2.9195 -8.1715 5.2199 22 1 -3.6207 -7.5958 2.9713 23 1 -0.3634 0.0046 1.0276 24 1 -0.3633 0.8877 -0.5178 25 1 -0.3634 -0.8922 -0.5099 26 1 1.6891 2.1423 0.0004 27 1 4.1737 2.0591 -0.0097 28 1 5.3046 -0.1287 -0.0084 29 1 0.4994 -2.3685 -0.4990 30 1 2.0414 -3.2576 -0.5031 31 1 2.1591 -3.0646 1.9663 32 1 0.6170 -2.1755 1.9703 33 1 2.1948 -5.4075 1.5011 34 1 0.7232 -6.2223 0.9199 35 1 1.5627 -5.0497 -0.1238 36 1 1.8029 -5.6159 3.3248 37 1 1.8288 -3.8900 3.7599 38 1 0.8693 -5.0374 4.7252 39 1 -1.5666 -6.0515 5.8825 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404904496.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:01 Heat of formation + Delta-G solvation = 14.045193 kcal Electronic energy + Delta-G solvation = -18057.521674 eV Core-core repulsion = 15385.139372 eV Total energy + Delta-G solvation = -2672.382302 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.30562 -39.06221 -35.44966 -34.52737 -33.86364 -31.25865 -29.62022 -28.15306 -27.32450 -26.85100 -24.39264 -23.18392 -22.12047 -20.86168 -18.20830 -17.76852 -17.50875 -16.77764 -16.22464 -15.74787 -15.65550 -15.41206 -14.93024 -14.59269 -14.02285 -13.92910 -13.68844 -13.61900 -13.51107 -13.17779 -13.07821 -12.69859 -12.60354 -12.56855 -12.45685 -12.10417 -12.00623 -11.81484 -11.50023 -10.91744 -10.59978 -10.48023 -10.30913 -9.66335 -8.89366 -8.09133 -6.20248 0.19384 0.39690 1.44982 1.46684 1.54185 2.44657 2.82957 3.20004 3.26439 3.58741 3.90859 3.98549 4.02494 4.17346 4.22875 4.37318 4.54095 4.61450 4.63882 4.71671 4.77817 4.82024 4.84374 4.84931 4.91406 4.98334 5.05579 5.15987 5.21630 5.29030 5.34372 5.43972 5.53164 5.70183 5.78140 5.88329 6.18447 6.46855 6.72390 6.92757 7.12362 7.48850 8.97263 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.040285 B = 0.004599 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.881099 B = 6086.826120 C = 6211.236901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.140 4.140 3 C -0.081 4.081 4 C -0.170 4.170 5 C 0.075 3.925 6 N -0.514 5.514 7 C 0.111 3.889 8 C -0.059 4.059 9 C 0.077 3.923 10 N -0.539 5.539 11 C 0.038 3.962 12 C 0.215 3.785 13 H 0.006 0.994 14 C -0.157 4.157 15 C -0.515 4.515 16 H 0.060 0.940 17 C 0.010 3.990 18 N -0.923 5.923 19 Si 0.961 3.039 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.271 1.271 23 H 0.069 0.931 24 H 0.090 0.910 25 H 0.072 0.928 26 H 0.163 0.837 27 H 0.167 0.833 28 H 0.174 0.826 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.011 0.989 32 H 0.056 0.944 33 H 0.010 0.990 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.030 0.970 37 H 0.017 0.983 38 H 0.062 0.938 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.885 13.543 -10.749 18.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.142 4.142 3 C -0.106 4.106 4 C -0.190 4.190 5 C -0.082 4.082 6 N -0.224 5.224 7 C -0.027 4.027 8 C -0.097 4.097 9 C -0.052 4.052 10 N -0.263 5.263 11 C -0.110 4.110 12 C 0.108 3.892 13 H 0.024 0.976 14 C -0.216 4.216 15 C -0.553 4.553 16 H 0.079 0.921 17 C -0.188 4.188 18 N -0.563 5.563 19 Si 0.787 3.213 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.196 1.196 23 H 0.088 0.912 24 H 0.108 0.892 25 H 0.091 0.909 26 H 0.180 0.820 27 H 0.185 0.815 28 H 0.191 0.809 29 H 0.115 0.885 30 H 0.091 0.909 31 H 0.030 0.970 32 H 0.075 0.925 33 H 0.028 0.972 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.049 0.951 37 H 0.036 0.964 38 H 0.081 0.919 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.857 12.774 -10.866 18.118 hybrid contribution -0.067 -0.203 1.051 1.072 sum 6.790 12.571 -9.816 17.334 Atomic orbital electron populations 1.20858 0.89143 1.04107 1.02951 1.21007 0.98621 0.93595 1.00991 1.21890 0.94618 0.98495 0.95634 1.22480 0.95458 1.00128 1.00886 1.23211 1.01314 0.87863 0.95809 1.67456 1.08429 1.33373 1.13098 1.21161 0.89768 0.95328 0.96399 1.20483 0.99805 0.92609 0.96776 1.21792 0.95331 0.92306 0.95781 1.62261 1.37956 1.02236 1.23801 1.22243 0.94957 0.95311 0.98534 1.19065 0.91705 0.95061 0.83353 0.97561 1.22200 0.98483 0.97327 1.03609 1.21360 1.29996 1.10344 0.93626 0.92142 1.25719 0.97722 1.00315 0.95035 1.70017 1.45844 1.41599 0.98808 0.85564 0.79150 0.79677 0.76951 1.19678 1.21127 1.19605 0.91215 0.89156 0.90937 0.81967 0.81518 0.80862 0.88481 0.90850 0.97029 0.92523 0.97160 0.92119 0.90870 0.95082 0.96423 0.91905 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.38 9.62 71.24 0.69 -1.69 16 2 C -0.14 -3.40 5.90 -19.77 -0.12 -3.52 16 3 C -0.08 -1.53 9.86 22.47 0.22 -1.31 16 4 C -0.17 -3.01 10.11 22.36 0.23 -2.78 16 5 C 0.08 1.70 11.18 84.69 0.95 2.65 16 6 N -0.51 -15.54 10.27 -183.88 -1.89 -17.42 16 7 C 0.11 3.28 6.03 42.54 0.26 3.54 16 8 C -0.06 -1.86 5.03 29.85 0.15 -1.71 16 9 C 0.08 2.96 4.38 86.30 0.38 3.34 16 10 N -0.54 -23.76 4.74 -901.46 -4.27 -28.04 16 11 C 0.04 1.52 8.56 127.69 1.09 2.62 16 12 C 0.22 11.26 2.34 44.17 0.10 11.36 16 13 H 0.01 0.37 8.03 -2.39 -0.02 0.36 16 14 C -0.16 -8.03 8.28 71.98 0.60 -7.43 16 15 C -0.51 -28.62 7.88 25.60 0.20 -28.42 16 16 H 0.06 3.32 6.77 -2.91 -0.02 3.30 16 17 C 0.01 0.58 5.30 84.65 0.45 1.03 16 18 N -0.92 -53.76 11.32 21.45 0.24 -53.52 16 19 Si 0.96 43.95 29.54 68.60 2.03 45.97 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 21 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 23 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.09 1.38 8.10 -2.39 -0.02 1.36 16 25 H 0.07 1.61 5.96 -2.39 -0.01 1.59 16 26 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 27 H 0.17 1.68 8.06 -2.91 -0.02 1.65 16 28 H 0.17 2.88 8.06 -2.91 -0.02 2.86 16 29 H 0.10 2.85 5.93 -2.39 -0.01 2.84 16 30 H 0.07 2.36 6.55 -2.39 -0.02 2.35 16 31 H 0.01 0.48 6.94 -2.39 -0.02 0.46 16 32 H 0.06 2.23 8.00 -2.38 -0.02 2.21 16 33 H 0.01 0.41 6.51 -2.39 -0.02 0.40 16 34 H 0.06 2.60 6.41 -2.39 -0.02 2.58 16 35 H 0.07 2.51 6.47 -2.39 -0.02 2.49 16 36 H 0.03 1.53 6.47 -2.39 -0.02 1.52 16 37 H 0.02 0.81 6.75 -2.39 -0.02 0.80 16 38 H 0.06 3.53 6.07 -2.39 -0.01 3.51 16 39 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -65.02 307.26 2.33 -62.69 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 1.03 Total: 12.65 kcal Atomic # 6 Polarization: -27.53 SS G_CDS: 5.19 Total: -22.33 kcal Atomic # 7 Polarization: -93.06 SS G_CDS: -5.92 Total: -98.98 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -65.02 2.33 -62.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404904496.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.736 kcal (2) G-P(sol) polarization free energy of solvation -65.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds