Wall clock time and date at job start Mon Mar 30 2020 05:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38672 * 120.41825 * 2 1 4 4 C 1.38634 * 118.41997 * 180.24757 * 3 2 1 5 5 C 1.38228 * 119.16076 * 359.74703 * 4 3 2 6 6 N 1.31852 * 120.76015 * 0.02562 * 5 4 3 7 7 C 1.31883 * 121.73168 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.61958 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47141 * 90.00367 * 8 7 6 10 10 N 1.46897 * 109.47311 * 180.02562 * 9 8 7 11 11 C 1.46905 * 111.00158 * 66.04467 * 10 9 8 12 12 C 1.46906 * 110.99814 * 189.99829 * 10 9 8 13 13 H 1.09000 * 109.47033 * 299.99847 * 12 10 9 14 14 C 1.52993 * 109.47378 * 60.00106 * 12 10 9 15 15 C 1.50701 * 109.46922 * 180.02562 * 12 10 9 16 16 H 1.07998 * 120.00099 * 0.02562 * 15 12 10 17 17 C 1.37880 * 119.99755 * 180.02562 * 15 12 10 18 18 N 1.31508 * 119.99915 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 119.99777 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.47152 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47191 * 119.99785 * 19 17 15 22 22 H 1.48494 * 109.47204 * 240.00116 * 19 17 15 23 23 H 1.09004 * 109.47321 * 270.25247 * 1 2 3 24 24 H 1.09004 * 109.47412 * 30.25379 * 1 2 3 25 25 H 1.09004 * 109.47451 * 150.24870 * 1 2 3 26 26 H 1.07999 * 120.79167 * 359.96792 * 3 2 1 27 27 H 1.08000 * 120.42035 * 179.73499 * 4 3 2 28 28 H 1.07997 * 119.61826 * 180.02562 * 5 4 3 29 29 H 1.08997 * 109.47741 * 330.00284 * 8 7 6 30 30 H 1.09006 * 109.47379 * 209.99896 * 8 7 6 31 31 H 1.09002 * 109.47334 * 59.99448 * 9 8 7 32 32 H 1.09006 * 109.46599 * 300.00007 * 9 8 7 33 33 H 1.09000 * 109.46939 * 183.95163 * 11 10 9 34 34 H 1.08999 * 109.47017 * 303.95687 * 11 10 9 35 35 H 1.09004 * 109.47000 * 63.95514 * 11 10 9 36 36 H 1.08992 * 109.47715 * 179.97438 * 14 12 10 37 37 H 1.09004 * 109.46862 * 299.99897 * 14 12 10 38 38 H 1.09004 * 109.46998 * 59.99419 * 14 12 10 39 39 H 0.97001 * 119.99839 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1475 -0.0053 5 6 4.2256 -0.0823 -0.0050 6 7 3.5254 -1.1995 -0.0003 7 6 2.2066 -1.1916 0.0038 8 6 1.4539 -2.4971 0.0085 9 6 1.2036 -2.9363 1.4526 10 7 0.4704 -4.2092 1.4572 11 6 1.2921 -5.2921 0.9000 12 6 0.0053 -4.5439 2.8099 13 1 0.8625 -4.6319 3.4774 14 6 -0.9249 -3.4402 3.3170 15 6 -0.7401 -5.8532 2.7751 16 1 -0.8563 -6.3838 1.8417 17 6 -1.2737 -6.3737 3.9351 18 7 -1.1317 -5.7277 5.0718 19 14 -2.1983 -7.9963 3.8919 20 1 -2.2172 -8.5184 2.5018 21 1 -1.5208 -8.9758 4.7788 22 1 -3.5914 -7.7848 4.3606 23 1 -0.3634 0.0045 1.0277 24 1 -0.3634 0.8877 -0.5178 25 1 -0.3634 -0.8922 -0.5100 26 1 1.6889 2.1423 -0.0005 27 1 4.1735 2.0592 -0.0097 28 1 5.3046 -0.1286 -0.0086 29 1 2.0418 -3.2574 -0.5057 30 1 0.4998 -2.3683 -0.5026 31 1 0.6157 -2.1760 1.9669 32 1 2.1577 -3.0651 1.9637 33 1 0.7019 -6.2071 0.8503 34 1 1.6232 -5.0183 -0.1017 35 1 2.1608 -5.4542 1.5382 36 1 -1.2704 -3.6887 4.3204 37 1 -0.3854 -2.4934 3.3422 38 1 -1.7821 -3.3522 2.6494 39 1 -1.5075 -6.0937 5.8877 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404904497.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:04 Heat of formation + Delta-G solvation = 33.371613 kcal Electronic energy + Delta-G solvation = -18063.557766 eV Core-core repulsion = 15392.013521 eV Total energy + Delta-G solvation = -2671.544245 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.33185 -37.15859 -34.01410 -33.32245 -32.36144 -29.67542 -28.64155 -27.19775 -25.63745 -24.28689 -22.95074 -22.09846 -20.82897 -19.23697 -16.78131 -16.41619 -16.22609 -15.24026 -14.77273 -14.48778 -14.22972 -13.84188 -13.33720 -13.16332 -12.91472 -12.70858 -12.55301 -12.42863 -12.12918 -11.73428 -11.40716 -11.05428 -11.00087 -10.83452 -10.59295 -10.24176 -10.05578 -10.00581 -9.81741 -9.62430 -9.33574 -8.83848 -8.65627 -8.39687 -7.12910 -5.98415 -4.02609 1.13474 1.29962 3.31515 3.39267 3.43763 3.80211 4.35374 4.45109 4.72041 4.78873 4.95185 5.02970 5.20574 5.34147 5.41946 5.53326 5.61025 5.68489 5.74902 5.86668 6.04924 6.09071 6.14909 6.23078 6.30083 6.44308 6.55030 6.57313 6.79365 6.86109 6.89176 7.08014 7.19703 7.56131 7.76337 7.86340 8.09054 8.24352 8.36015 8.64225 9.04484 9.62363 11.08592 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.041636 B = 0.004642 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.336030 B = 6030.445859 C = 6249.001843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.131 4.131 3 C -0.079 4.079 4 C -0.182 4.182 5 C 0.091 3.909 6 N -0.480 5.480 7 C 0.141 3.859 8 C -0.072 4.072 9 C 0.062 3.938 10 N -0.537 5.537 11 C 0.036 3.964 12 C 0.211 3.789 13 H -0.003 1.003 14 C -0.132 4.132 15 C -0.501 4.501 16 H 0.064 0.936 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.896 3.104 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.284 1.284 23 H 0.077 0.923 24 H 0.064 0.936 25 H 0.080 0.920 26 H 0.131 0.869 27 H 0.130 0.870 28 H 0.151 0.849 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.022 0.978 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.011 0.989 36 H 0.084 0.916 37 H 0.007 0.993 38 H 0.035 0.965 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.945 12.753 -9.660 17.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.133 4.133 3 C -0.105 4.105 4 C -0.202 4.202 5 C -0.066 4.066 6 N -0.189 5.189 7 C 0.003 3.997 8 C -0.110 4.110 9 C -0.067 4.067 10 N -0.262 5.262 11 C -0.113 4.113 12 C 0.105 3.895 13 H 0.015 0.985 14 C -0.190 4.190 15 C -0.540 4.540 16 H 0.083 0.917 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.724 3.276 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.211 1.211 23 H 0.096 0.904 24 H 0.082 0.918 25 H 0.098 0.902 26 H 0.149 0.851 27 H 0.148 0.852 28 H 0.169 0.831 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.041 0.959 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.030 0.970 36 H 0.103 0.897 37 H 0.026 0.974 38 H 0.054 0.946 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.920 11.973 -9.758 16.541 hybrid contribution -0.037 0.030 0.688 0.690 sum 5.884 12.003 -9.070 16.154 Atomic orbital electron populations 1.20851 0.89989 1.03173 1.03213 1.20795 0.97838 0.93483 1.01220 1.21457 0.94144 0.97990 0.96899 1.22059 0.95292 0.99448 1.03429 1.22703 1.00146 0.87796 0.95960 1.67543 1.08015 1.31369 1.11926 1.21302 0.89455 0.95228 0.93742 1.20696 0.99170 0.91753 0.99404 1.21959 0.96576 0.94494 0.93649 1.62134 1.36666 1.00742 1.26614 1.22244 0.95632 0.96233 0.97163 1.19245 0.93457 0.94511 0.82240 0.98550 1.21848 0.98856 0.94978 1.03365 1.21208 1.34070 1.04463 0.94241 0.91748 1.24939 0.96371 0.97554 0.95452 1.69906 1.46103 1.38552 0.98796 0.86472 0.79498 0.83584 0.78039 1.19725 1.21199 1.21064 0.90440 0.91752 0.90175 0.85131 0.85190 0.83121 0.90257 0.89300 0.90861 0.95940 0.90697 0.93643 0.97039 0.89712 0.97390 0.94630 0.93096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 9.62 36.00 0.35 -0.94 16 2 C -0.13 -1.70 5.90 -104.48 -0.62 -2.32 16 3 C -0.08 -0.87 9.86 -39.27 -0.39 -1.26 16 4 C -0.18 -1.92 10.11 -39.44 -0.40 -2.32 16 5 C 0.09 1.12 11.18 -17.55 -0.20 0.92 16 6 N -0.48 -7.43 10.27 -9.48 -0.10 -7.52 16 7 C 0.14 2.13 6.03 -82.59 -0.50 1.63 16 8 C -0.07 -1.15 5.04 -27.88 -0.14 -1.29 16 9 C 0.06 1.19 4.75 -3.83 -0.02 1.17 16 10 N -0.54 -11.77 4.62 -236.28 -1.09 -12.86 16 11 C 0.04 0.73 9.05 60.07 0.54 1.27 16 12 C 0.21 5.44 2.06 -68.86 -0.14 5.30 16 13 H 0.00 -0.09 8.14 -51.93 -0.42 -0.51 16 14 C -0.13 -3.26 8.77 37.15 0.33 -2.93 16 15 C -0.50 -13.82 7.93 -34.44 -0.27 -14.09 16 16 H 0.06 1.77 6.39 -52.49 -0.34 1.43 16 17 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 18 N -0.89 -25.72 11.32 55.43 0.63 -25.09 16 19 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 23 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.06 0.58 8.10 -51.93 -0.42 0.15 16 25 H 0.08 0.92 5.95 -51.93 -0.31 0.61 16 26 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 27 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 28 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.08 1.29 6.47 -51.93 -0.34 0.95 16 30 H 0.09 1.32 5.93 -51.93 -0.31 1.01 16 31 H 0.07 1.41 5.83 -51.93 -0.30 1.11 16 32 H 0.02 0.46 8.12 -51.93 -0.42 0.04 16 33 H 0.07 1.60 6.23 -51.93 -0.32 1.28 16 34 H 0.04 0.79 6.30 -51.93 -0.33 0.47 16 35 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.08 2.28 6.07 -51.93 -0.32 1.97 16 37 H 0.01 0.16 6.20 -51.93 -0.32 -0.16 16 38 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 309.33 15.07 4.66 4.66 Total: -1.00 -30.23 309.33 -8.29 -38.52 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -5.82 Total: -0.76 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -1.55 Total: -13.34 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: -0.56 Total: -45.47 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.23 -8.29 -38.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404904497.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.893 kcal (2) G-P(sol) polarization free energy of solvation -30.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds