Wall clock time and date at job start Mon Mar 30 2020 05:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38672 * 120.41825 * 2 1 4 4 C 1.38634 * 118.41997 * 180.24757 * 3 2 1 5 5 C 1.38228 * 119.16076 * 359.74703 * 4 3 2 6 6 N 1.31852 * 120.76015 * 0.02562 * 5 4 3 7 7 C 1.31883 * 121.73168 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.61958 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47141 * 90.00367 * 8 7 6 10 10 N 1.46897 * 109.47311 * 180.02562 * 9 8 7 11 11 C 1.46905 * 111.00158 * 66.04467 * 10 9 8 12 12 C 1.46906 * 110.99814 * 189.99829 * 10 9 8 13 13 H 1.09000 * 109.47033 * 299.99847 * 12 10 9 14 14 C 1.52993 * 109.47378 * 60.00106 * 12 10 9 15 15 C 1.50701 * 109.46922 * 180.02562 * 12 10 9 16 16 H 1.07998 * 120.00099 * 0.02562 * 15 12 10 17 17 C 1.37880 * 119.99755 * 180.02562 * 15 12 10 18 18 N 1.31508 * 119.99915 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 119.99777 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.47152 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47191 * 119.99785 * 19 17 15 22 22 H 1.48494 * 109.47204 * 240.00116 * 19 17 15 23 23 H 1.09004 * 109.47321 * 270.25247 * 1 2 3 24 24 H 1.09004 * 109.47412 * 30.25379 * 1 2 3 25 25 H 1.09004 * 109.47451 * 150.24870 * 1 2 3 26 26 H 1.07999 * 120.79167 * 359.96792 * 3 2 1 27 27 H 1.08000 * 120.42035 * 179.73499 * 4 3 2 28 28 H 1.07997 * 119.61826 * 180.02562 * 5 4 3 29 29 H 1.08997 * 109.47741 * 330.00284 * 8 7 6 30 30 H 1.09006 * 109.47379 * 209.99896 * 8 7 6 31 31 H 1.09002 * 109.47334 * 59.99448 * 9 8 7 32 32 H 1.09006 * 109.46599 * 300.00007 * 9 8 7 33 33 H 1.09000 * 109.46939 * 183.95163 * 11 10 9 34 34 H 1.08999 * 109.47017 * 303.95687 * 11 10 9 35 35 H 1.09004 * 109.47000 * 63.95514 * 11 10 9 36 36 H 1.08992 * 109.47715 * 179.97438 * 14 12 10 37 37 H 1.09004 * 109.46862 * 299.99897 * 14 12 10 38 38 H 1.09004 * 109.46998 * 59.99419 * 14 12 10 39 39 H 0.97001 * 119.99839 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1475 -0.0053 5 6 4.2256 -0.0823 -0.0050 6 7 3.5254 -1.1995 -0.0003 7 6 2.2066 -1.1916 0.0038 8 6 1.4539 -2.4971 0.0085 9 6 1.2036 -2.9363 1.4526 10 7 0.4704 -4.2092 1.4572 11 6 1.2921 -5.2921 0.9000 12 6 0.0053 -4.5439 2.8099 13 1 0.8625 -4.6319 3.4774 14 6 -0.9249 -3.4402 3.3170 15 6 -0.7401 -5.8532 2.7751 16 1 -0.8563 -6.3838 1.8417 17 6 -1.2737 -6.3737 3.9351 18 7 -1.1317 -5.7277 5.0718 19 14 -2.1983 -7.9963 3.8919 20 1 -2.2172 -8.5184 2.5018 21 1 -1.5208 -8.9758 4.7788 22 1 -3.5914 -7.7848 4.3606 23 1 -0.3634 0.0045 1.0277 24 1 -0.3634 0.8877 -0.5178 25 1 -0.3634 -0.8922 -0.5100 26 1 1.6889 2.1423 -0.0005 27 1 4.1735 2.0592 -0.0097 28 1 5.3046 -0.1286 -0.0086 29 1 2.0418 -3.2574 -0.5057 30 1 0.4998 -2.3683 -0.5026 31 1 0.6157 -2.1760 1.9669 32 1 2.1577 -3.0651 1.9637 33 1 0.7019 -6.2071 0.8503 34 1 1.6232 -5.0183 -0.1017 35 1 2.1608 -5.4542 1.5382 36 1 -1.2704 -3.6887 4.3204 37 1 -0.3854 -2.4934 3.3422 38 1 -1.7821 -3.3522 2.6494 39 1 -1.5075 -6.0937 5.8877 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404904497.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:04 Heat of formation + Delta-G solvation = 14.667547 kcal Electronic energy + Delta-G solvation = -18064.368835 eV Core-core repulsion = 15392.013521 eV Total energy + Delta-G solvation = -2672.355314 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.30640 -38.90356 -35.44615 -34.54119 -33.84343 -31.37729 -30.17951 -28.23283 -27.38134 -26.07940 -24.32032 -23.17413 -22.10902 -21.07749 -18.37011 -17.73185 -17.54430 -16.82876 -16.07629 -15.94405 -15.64979 -15.25443 -14.91568 -14.62423 -14.03046 -13.96554 -13.80396 -13.62542 -13.42656 -13.33282 -12.95705 -12.85361 -12.61568 -12.49536 -12.16098 -12.07295 -11.96874 -11.91609 -11.45166 -10.86732 -10.59999 -10.51545 -10.30660 -9.66295 -8.98688 -8.10782 -6.22787 0.19335 0.39816 1.42582 1.44064 1.56303 2.43111 2.82655 3.16753 3.25381 3.56908 3.89930 3.98376 4.02417 4.17459 4.22737 4.35898 4.53295 4.57750 4.64980 4.72307 4.78292 4.82650 4.85946 4.92753 4.98677 5.02967 5.06708 5.11108 5.25923 5.28816 5.34094 5.43984 5.51254 5.73415 5.78183 5.88593 6.25060 6.37504 6.70855 6.91863 7.12385 7.46522 8.95854 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.041636 B = 0.004642 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.336030 B = 6030.445859 C = 6249.001843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.139 4.139 3 C -0.080 4.080 4 C -0.170 4.170 5 C 0.075 3.925 6 N -0.516 5.516 7 C 0.110 3.890 8 C -0.058 4.058 9 C 0.072 3.928 10 N -0.538 5.538 11 C 0.040 3.960 12 C 0.214 3.786 13 H -0.045 1.045 14 C -0.119 4.119 15 C -0.518 4.518 16 H 0.063 0.937 17 C 0.010 3.990 18 N -0.923 5.923 19 Si 0.962 3.038 20 H -0.266 1.266 21 H -0.283 1.283 22 H -0.279 1.279 23 H 0.070 0.930 24 H 0.090 0.910 25 H 0.072 0.928 26 H 0.163 0.837 27 H 0.167 0.833 28 H 0.174 0.826 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.001 0.999 33 H 0.063 0.937 34 H 0.076 0.924 35 H -0.001 1.001 36 H 0.059 0.941 37 H 0.027 0.973 38 H 0.037 0.963 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.820 14.254 -10.947 18.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.141 4.141 3 C -0.106 4.106 4 C -0.189 4.189 5 C -0.082 4.082 6 N -0.225 5.225 7 C -0.027 4.027 8 C -0.096 4.096 9 C -0.057 4.057 10 N -0.262 5.262 11 C -0.109 4.109 12 C 0.107 3.893 13 H -0.028 1.028 14 C -0.177 4.177 15 C -0.556 4.556 16 H 0.081 0.919 17 C -0.189 4.189 18 N -0.563 5.563 19 Si 0.788 3.212 20 H -0.190 1.190 21 H -0.209 1.209 22 H -0.204 1.204 23 H 0.089 0.911 24 H 0.109 0.891 25 H 0.091 0.909 26 H 0.181 0.819 27 H 0.185 0.815 28 H 0.191 0.809 29 H 0.090 0.910 30 H 0.117 0.883 31 H 0.089 0.911 32 H 0.019 0.981 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.017 0.983 36 H 0.078 0.922 37 H 0.046 0.954 38 H 0.057 0.943 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.799 13.480 -11.063 18.377 hybrid contribution 0.106 -0.331 1.076 1.131 sum 5.905 13.148 -9.986 17.535 Atomic orbital electron populations 1.20866 0.89050 1.04132 1.03031 1.21007 0.98671 0.93527 1.00901 1.21896 0.94589 0.98520 0.95608 1.22482 0.95495 1.00096 1.00860 1.23205 1.01301 0.87876 0.95860 1.67448 1.08496 1.33425 1.13127 1.21157 0.89749 0.95344 0.96468 1.20482 0.99876 0.92600 0.96666 1.21909 0.94878 0.92911 0.96015 1.62111 1.37777 1.02195 1.24094 1.22238 0.94669 0.95513 0.98451 1.19078 0.92060 0.94668 0.83456 1.02804 1.21647 0.98796 0.95546 1.01743 1.21470 1.34403 1.05393 0.94356 0.91918 1.25747 0.97160 1.00927 0.95042 1.70038 1.46795 1.40065 0.99356 0.85435 0.78180 0.79329 0.78261 1.18968 1.20903 1.20447 0.91095 0.89138 0.90907 0.81904 0.81511 0.80906 0.90973 0.88282 0.91131 0.98084 0.91816 0.90508 0.98259 0.92203 0.95405 0.94347 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.34 9.62 71.23 0.69 -1.65 16 2 C -0.14 -3.35 5.90 -19.78 -0.12 -3.47 16 3 C -0.08 -1.51 9.86 22.47 0.22 -1.29 16 4 C -0.17 -3.00 10.11 22.36 0.23 -2.78 16 5 C 0.07 1.70 11.18 84.69 0.95 2.65 16 6 N -0.52 -15.69 10.27 -183.89 -1.89 -17.58 16 7 C 0.11 3.27 6.03 42.54 0.26 3.52 16 8 C -0.06 -1.85 5.04 29.85 0.15 -1.70 16 9 C 0.07 2.78 4.75 86.30 0.41 3.19 16 10 N -0.54 -23.95 4.62 -901.44 -4.17 -28.12 16 11 C 0.04 1.64 9.05 127.69 1.16 2.79 16 12 C 0.21 11.35 2.06 44.17 0.09 11.44 16 13 H -0.05 -2.74 8.14 -2.39 -0.02 -2.76 16 14 C -0.12 -5.97 8.77 71.98 0.63 -5.34 16 15 C -0.52 -29.03 7.93 25.60 0.20 -28.82 16 16 H 0.06 3.47 6.39 -2.91 -0.02 3.45 16 17 C 0.01 0.54 5.30 84.66 0.45 0.98 16 18 N -0.92 -54.06 11.32 21.45 0.24 -53.81 16 19 Si 0.96 44.10 29.54 68.60 2.03 46.13 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 24 H 0.09 1.35 8.10 -2.39 -0.02 1.33 16 25 H 0.07 1.58 5.95 -2.39 -0.01 1.57 16 26 H 0.16 1.95 8.06 -2.91 -0.02 1.92 16 27 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 28 H 0.17 2.90 8.06 -2.91 -0.02 2.88 16 29 H 0.07 2.34 6.47 -2.39 -0.02 2.33 16 30 H 0.10 2.89 5.93 -2.38 -0.01 2.87 16 31 H 0.07 2.74 5.83 -2.39 -0.01 2.73 16 32 H 0.00 0.04 8.12 -2.38 -0.02 0.02 16 33 H 0.06 2.75 6.23 -2.39 -0.01 2.74 16 34 H 0.08 2.67 6.30 -2.39 -0.02 2.65 16 35 H 0.00 -0.05 8.14 -2.38 -0.02 -0.07 16 36 H 0.06 3.30 6.07 -2.39 -0.01 3.28 16 37 H 0.03 1.23 6.20 -2.38 -0.01 1.22 16 38 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -66.41 309.33 2.55 -63.86 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 1.03 Total: 9.98 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: 5.31 Total: -20.46 kcal Atomic # 7 Polarization: -93.70 SS G_CDS: -5.81 Total: -99.51 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -66.41 2.55 -63.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404904497.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.528 kcal (2) G-P(sol) polarization free energy of solvation -66.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds