Wall clock time and date at job start Mon Mar 30 2020 06:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99663 * 2 1 3 5 5 N 1.34950 * 126.12668 * 299.68891 * 4 2 1 6 6 H 0.97000 * 126.03753 * 0.04016 * 5 4 2 7 7 N 1.40086 * 107.92560 * 179.90548 * 5 4 2 8 8 C 1.30839 * 108.20369 * 0.36242 * 7 5 4 9 9 C 1.50708 * 125.89819 * 179.74307 * 8 7 5 10 10 C 1.53778 * 113.61349 * 39.18206 * 9 8 7 11 11 C 1.53958 * 87.01845 * 220.04945 * 10 9 8 12 12 C 1.53782 * 113.61219 * 301.57232 * 9 8 7 13 13 C 1.35316 * 126.12649 * 120.00205 * 4 2 1 14 14 C 1.50697 * 126.04135 * 359.93990 * 13 4 2 15 15 C 1.50701 * 109.46780 * 90.02608 * 14 13 4 16 16 H 1.07993 * 120.00612 * 0.02562 * 15 14 13 17 17 C 1.37886 * 119.99689 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99378 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00113 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47152 * 89.99838 * 19 17 15 21 21 H 1.48494 * 109.46934 * 209.99873 * 19 17 15 22 22 H 1.48507 * 109.46967 * 329.99789 * 19 17 15 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 27 27 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 28 28 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 30 30 H 1.08999 * 112.85042 * 170.37885 * 9 8 7 31 31 H 1.09006 * 113.61365 * 334.56895 * 10 9 8 32 32 H 1.08994 * 113.61368 * 105.46730 * 10 9 8 33 33 H 1.09001 * 113.53331 * 270.81121 * 11 10 9 34 34 H 1.09001 * 113.74261 * 139.94813 * 11 10 9 35 35 H 1.08991 * 113.61454 * 254.52560 * 12 9 8 36 36 H 1.08996 * 113.61585 * 25.43923 * 12 9 8 37 37 H 1.08999 * 109.47330 * 210.02490 * 14 13 4 38 38 H 1.08996 * 109.47369 * 330.02961 * 14 13 4 39 39 H 0.97011 * 119.99087 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7885 -0.3552 2.5094 6 1 1.2578 0.4030 2.7999 7 7 2.4346 -1.2769 3.3434 8 6 3.0510 -2.1495 2.5881 9 6 3.8754 -3.3134 3.0749 10 6 3.2829 -4.0147 4.3086 11 6 4.7245 -4.1274 4.8370 12 6 5.0553 -2.9007 3.9706 13 6 2.8135 -1.8150 1.2509 14 6 3.3349 -2.5547 0.0459 15 6 4.6691 -1.9812 -0.3568 16 1 5.0969 -1.1634 0.2039 17 6 5.3437 -2.5008 -1.4413 18 7 6.5078 -2.0000 -1.7930 19 14 4.6036 -3.9150 -2.4117 20 1 3.7612 -3.3750 -3.5091 21 1 5.6929 -4.7446 -2.9863 22 1 3.7681 -4.7495 -1.5112 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.6767 1.9563 0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 4.1537 -3.9991 2.2746 31 1 2.6453 -3.3697 4.9133 32 1 2.8224 -4.9769 4.0847 33 1 5.2347 -5.0368 4.5193 34 1 4.8152 -3.9432 5.9075 35 1 6.0235 -2.9650 3.4743 36 1 4.9032 -1.9507 4.4828 37 1 3.4520 -3.6104 0.2902 38 1 2.6301 -2.4485 -0.7787 39 1 6.9823 -2.3654 -2.5563 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409437955.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:16 Heat of formation + Delta-G solvation = 65.255793 kcal Electronic energy + Delta-G solvation = -18545.987555 eV Core-core repulsion = 15875.825911 eV Total energy + Delta-G solvation = -2670.161644 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.82099 -38.01646 -35.01016 -33.32052 -31.33829 -29.81875 -26.96559 -26.94062 -25.48819 -25.16971 -22.76084 -21.72817 -20.00553 -18.61125 -18.11090 -16.67542 -16.37237 -15.19016 -14.64746 -14.41314 -14.32439 -13.96640 -13.46510 -12.81449 -12.76437 -12.29924 -12.09401 -12.04154 -11.96962 -11.78390 -11.66838 -11.04996 -10.93644 -10.85428 -10.47231 -10.43222 -10.16519 -10.07517 -10.04234 -9.95191 -9.51949 -9.24885 -8.51705 -8.49149 -7.38039 -5.98589 -3.95020 2.52733 3.32333 3.40747 3.44295 3.46799 3.53305 4.48512 4.95182 5.03557 5.10436 5.17247 5.17694 5.34043 5.41794 5.47492 5.56964 5.72942 5.77827 5.94613 5.95721 6.03647 6.07341 6.18415 6.19170 6.21402 6.33523 6.43102 6.46226 6.55015 6.56146 6.65378 6.82142 7.03098 7.12093 7.43269 7.50594 7.81275 7.96596 8.42701 8.63941 9.09508 9.63565 11.14846 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.013064 B = 0.010729 C = 0.006790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.749398 B = 2609.106833 C = 4122.846774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.031 4.031 3 C -0.142 4.142 4 C 0.075 3.925 5 N -0.486 5.486 6 H 0.426 0.574 7 N -0.308 5.308 8 C 0.093 3.907 9 C -0.026 4.026 10 C -0.131 4.131 11 C -0.142 4.142 12 C -0.124 4.124 13 C -0.172 4.172 14 C 0.053 3.947 15 C -0.500 4.500 16 H 0.070 0.930 17 C 0.067 3.933 18 N -0.904 5.904 19 Si 0.872 3.128 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.264 1.264 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.046 0.954 26 H 0.105 0.895 27 H 0.043 0.957 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.110 0.890 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.023 0.977 38 H 0.016 0.984 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.645 0.732 7.313 12.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.051 4.051 3 C -0.199 4.199 4 C -0.051 4.051 5 N -0.195 5.195 6 H 0.269 0.731 7 N -0.131 5.131 8 C -0.072 4.072 9 C -0.046 4.046 10 C -0.169 4.169 11 C -0.180 4.180 12 C -0.162 4.162 13 C -0.183 4.183 14 C 0.015 3.985 15 C -0.538 4.538 16 H 0.088 0.912 17 C -0.133 4.133 18 N -0.543 5.543 19 Si 0.699 3.301 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.189 1.189 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.065 0.935 26 H 0.123 0.877 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.128 0.872 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.041 0.959 38 H 0.034 0.966 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.747 1.060 8.360 12.885 hybrid contribution -0.332 -0.402 -1.342 1.439 sum -10.079 0.659 7.019 12.300 Atomic orbital electron populations 1.21854 0.95047 1.01936 1.01293 1.19797 0.94629 0.95810 0.94905 1.21793 1.02558 0.94732 1.00843 1.20581 1.01032 0.97331 0.86183 1.45875 1.44311 1.25562 1.03727 0.73147 1.76995 1.15621 1.03358 1.17176 1.21833 0.97401 0.96210 0.91787 1.20931 0.94282 0.93073 0.96351 1.22988 0.96454 1.00234 0.97192 1.22854 0.97040 0.98837 0.99253 1.22858 0.98422 0.97890 0.97035 1.20102 1.03345 0.99105 0.95714 1.18099 0.96093 0.94735 0.89574 1.21011 1.01658 1.18347 1.12804 0.91153 1.24989 0.94718 0.96573 0.97064 1.69914 1.14450 1.42349 1.27617 0.86899 0.79088 0.83396 0.80714 1.20361 1.21453 1.18868 0.92410 0.92145 0.93471 0.87712 0.93766 0.91454 0.92272 0.87184 0.89831 0.91866 0.90301 0.91873 0.90957 0.90239 0.95875 0.96565 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.18 37.16 0.34 -1.47 16 2 C -0.03 -0.50 3.27 -91.77 -0.30 -0.80 16 3 C -0.14 -2.05 9.18 37.16 0.34 -1.71 16 4 C 0.07 1.40 5.72 -82.26 -0.47 0.93 16 5 N -0.49 -8.30 7.36 33.48 0.25 -8.05 16 6 H 0.43 5.78 8.96 -182.61 -1.64 4.14 16 7 N -0.31 -5.91 12.32 33.67 0.41 -5.50 16 8 C 0.09 1.90 6.27 -82.40 -0.52 1.38 16 9 C -0.03 -0.47 4.09 -90.96 -0.37 -0.84 16 10 C -0.13 -1.95 7.63 -25.83 -0.20 -2.14 16 11 C -0.14 -1.94 8.09 -25.82 -0.21 -2.15 16 12 C -0.12 -2.05 7.63 -25.92 -0.20 -2.25 16 13 C -0.17 -3.73 5.29 -105.05 -0.56 -4.28 16 14 C 0.05 1.27 3.93 -29.04 -0.11 1.16 16 15 C -0.50 -13.94 9.65 -34.44 -0.33 -14.28 16 16 H 0.07 2.19 7.98 -52.49 -0.42 1.77 16 17 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 18 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 19 Si 0.87 21.19 27.47 -169.99 -4.67 16.52 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.10 1.89 6.79 -51.93 -0.35 1.54 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.11 2.09 7.14 -51.93 -0.37 1.72 16 31 H 0.08 1.28 7.79 -51.93 -0.40 0.87 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.08 1.35 8.09 -51.93 -0.42 0.93 16 37 H 0.02 0.55 6.31 -51.93 -0.33 0.23 16 38 H 0.02 0.38 6.57 -51.93 -0.34 0.04 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 316.61 15.07 4.77 4.77 Total: -1.00 -31.01 316.61 -8.81 -39.82 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -7.67 Total: 3.76 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: -2.68 Total: -24.64 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 1.43 Total: -40.23 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.01 -8.81 -39.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409437955.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.072 kcal (2) G-P(sol) polarization free energy of solvation -31.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds