Wall clock time and date at job start Mon Mar 30 2020 06:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99663 * 2 1 3 5 5 N 1.34950 * 126.12668 * 299.68891 * 4 2 1 6 6 H 0.97000 * 126.03753 * 0.04016 * 5 4 2 7 7 N 1.40086 * 107.92560 * 179.90548 * 5 4 2 8 8 C 1.30839 * 108.20369 * 0.36242 * 7 5 4 9 9 C 1.50708 * 125.89819 * 179.74307 * 8 7 5 10 10 C 1.53778 * 113.61349 * 39.18206 * 9 8 7 11 11 C 1.53958 * 87.01845 * 220.04945 * 10 9 8 12 12 C 1.53782 * 113.61219 * 301.57232 * 9 8 7 13 13 C 1.35316 * 126.12649 * 120.00205 * 4 2 1 14 14 C 1.50697 * 126.04135 * 359.93990 * 13 4 2 15 15 C 1.50701 * 109.46780 * 90.02608 * 14 13 4 16 16 H 1.07993 * 120.00612 * 0.02562 * 15 14 13 17 17 C 1.37886 * 119.99689 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99378 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00113 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47152 * 89.99838 * 19 17 15 21 21 H 1.48494 * 109.46934 * 209.99873 * 19 17 15 22 22 H 1.48507 * 109.46967 * 329.99789 * 19 17 15 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 27 27 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 28 28 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 30 30 H 1.08999 * 112.85042 * 170.37885 * 9 8 7 31 31 H 1.09006 * 113.61365 * 334.56895 * 10 9 8 32 32 H 1.08994 * 113.61368 * 105.46730 * 10 9 8 33 33 H 1.09001 * 113.53331 * 270.81121 * 11 10 9 34 34 H 1.09001 * 113.74261 * 139.94813 * 11 10 9 35 35 H 1.08991 * 113.61454 * 254.52560 * 12 9 8 36 36 H 1.08996 * 113.61585 * 25.43923 * 12 9 8 37 37 H 1.08999 * 109.47330 * 210.02490 * 14 13 4 38 38 H 1.08996 * 109.47369 * 330.02961 * 14 13 4 39 39 H 0.97011 * 119.99087 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7885 -0.3552 2.5094 6 1 1.2578 0.4030 2.7999 7 7 2.4346 -1.2769 3.3434 8 6 3.0510 -2.1495 2.5881 9 6 3.8754 -3.3134 3.0749 10 6 3.2829 -4.0147 4.3086 11 6 4.7245 -4.1274 4.8370 12 6 5.0553 -2.9007 3.9706 13 6 2.8135 -1.8150 1.2509 14 6 3.3349 -2.5547 0.0459 15 6 4.6691 -1.9812 -0.3568 16 1 5.0969 -1.1634 0.2039 17 6 5.3437 -2.5008 -1.4413 18 7 6.5078 -2.0000 -1.7930 19 14 4.6036 -3.9150 -2.4117 20 1 3.7612 -3.3750 -3.5091 21 1 5.6929 -4.7446 -2.9863 22 1 3.7681 -4.7495 -1.5112 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.6767 1.9563 0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 4.1537 -3.9991 2.2746 31 1 2.6453 -3.3697 4.9133 32 1 2.8224 -4.9769 4.0847 33 1 5.2347 -5.0368 4.5193 34 1 4.8152 -3.9432 5.9075 35 1 6.0235 -2.9650 3.4743 36 1 4.9032 -1.9507 4.4828 37 1 3.4520 -3.6104 0.2902 38 1 2.6301 -2.4485 -0.7787 39 1 6.9823 -2.3654 -2.5563 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409437955.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:15 Heat of formation + Delta-G solvation = 46.920737 kcal Electronic energy + Delta-G solvation = -18546.782622 eV Core-core repulsion = 15875.825911 eV Total energy + Delta-G solvation = -2670.956711 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.31688 -39.30559 -36.29209 -35.34182 -33.21119 -31.35023 -28.78036 -28.03141 -26.82814 -26.43613 -24.58125 -23.24449 -21.30285 -20.13666 -19.54798 -18.86502 -17.83522 -16.47497 -16.24623 -15.96901 -15.71276 -15.56663 -14.84057 -14.68558 -13.95221 -13.86997 -13.79925 -13.30757 -13.26579 -13.16954 -12.94950 -12.74640 -12.35423 -12.18504 -12.12129 -11.89312 -11.79000 -11.58078 -11.48928 -11.43880 -11.30932 -10.92357 -10.69120 -9.96391 -9.00583 -8.20916 -6.22946 1.02981 1.39091 1.41549 1.53444 1.93659 2.09100 2.41288 3.13524 3.63716 3.72555 3.88182 3.90660 3.98013 4.13556 4.16431 4.24581 4.53305 4.64799 4.71574 4.74132 4.82060 4.91203 4.91652 4.93009 4.97872 5.09278 5.11388 5.13559 5.17068 5.19456 5.32880 5.37804 5.46495 5.63589 5.65136 5.70785 5.86765 6.40703 6.59841 6.81933 6.91806 7.39387 8.96062 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.013064 B = 0.010729 C = 0.006790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.749398 B = 2609.106833 C = 4122.846774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.035 4.035 3 C -0.137 4.137 4 C 0.092 3.908 5 N -0.470 5.470 6 H 0.444 0.556 7 N -0.315 5.315 8 C 0.084 3.916 9 C -0.045 4.045 10 C -0.117 4.117 11 C -0.123 4.123 12 C -0.129 4.129 13 C -0.226 4.226 14 C 0.066 3.934 15 C -0.498 4.498 16 H 0.019 0.981 17 C 0.008 3.992 18 N -0.952 5.952 19 Si 0.942 3.058 20 H -0.264 1.264 21 H -0.286 1.286 22 H -0.246 1.246 23 H 0.051 0.949 24 H 0.082 0.918 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.029 0.971 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.022 0.978 38 H 0.023 0.977 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.071 0.146 7.830 14.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.055 4.055 3 C -0.195 4.195 4 C -0.036 4.036 5 N -0.180 5.180 6 H 0.290 0.710 7 N -0.139 5.139 8 C -0.081 4.081 9 C -0.065 4.065 10 C -0.155 4.155 11 C -0.160 4.160 12 C -0.168 4.168 13 C -0.236 4.236 14 C 0.028 3.972 15 C -0.536 4.536 16 H 0.037 0.963 17 C -0.188 4.188 18 N -0.594 5.594 19 Si 0.765 3.235 20 H -0.189 1.189 21 H -0.212 1.212 22 H -0.170 1.170 23 H 0.071 0.929 24 H 0.101 0.899 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.049 0.951 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.040 0.960 38 H 0.041 0.959 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.202 0.494 8.912 15.118 hybrid contribution 0.455 -0.071 -1.477 1.547 sum -11.747 0.423 7.435 13.909 Atomic orbital electron populations 1.21799 0.91707 1.02309 1.03430 1.19903 0.97312 0.95915 0.92387 1.21762 1.00159 0.94250 1.03286 1.20922 0.99128 0.96055 0.87533 1.45858 1.43621 1.25544 1.03000 0.71003 1.76944 1.16028 1.03594 1.17310 1.22140 0.97555 0.96957 0.91450 1.21091 0.95372 0.92851 0.97208 1.22903 0.97197 1.00363 0.95039 1.22799 0.95738 0.97534 0.99924 1.22863 0.97109 0.99245 0.97568 1.20135 1.06405 1.01418 0.95676 1.17845 0.93874 0.94567 0.90902 1.21129 1.03438 1.16914 1.12166 0.96256 1.25896 0.95005 0.99621 0.98248 1.70078 1.16295 1.44405 1.28607 0.85778 0.78537 0.79755 0.79392 1.18941 1.21178 1.16983 0.92939 0.89876 0.91511 0.90306 0.91387 0.95130 0.89834 0.88846 0.90043 0.90255 0.88909 0.89700 0.92528 0.91036 0.96026 0.95858 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 9.18 71.98 0.66 -2.34 16 2 C -0.03 -1.07 3.27 -11.54 -0.04 -1.11 16 3 C -0.14 -3.79 9.18 71.98 0.66 -3.13 16 4 C 0.09 3.39 5.72 41.40 0.24 3.63 16 5 N -0.47 -15.45 7.36 -48.00 -0.35 -15.81 16 6 H 0.44 10.97 8.96 -213.33 -1.91 9.06 16 7 N -0.32 -11.92 12.32 -47.38 -0.58 -12.51 16 8 C 0.08 3.46 6.27 43.10 0.27 3.73 16 9 C -0.04 -1.64 4.09 -11.01 -0.04 -1.69 16 10 C -0.12 -3.30 7.63 31.18 0.24 -3.07 16 11 C -0.12 -3.11 8.09 31.18 0.25 -2.86 16 12 C -0.13 -4.34 7.63 31.12 0.24 -4.11 16 13 C -0.23 -9.95 5.29 -20.14 -0.11 -10.05 16 14 C 0.07 3.24 3.93 29.10 0.11 3.35 16 15 C -0.50 -29.06 9.65 25.60 0.25 -28.81 16 16 H 0.02 1.28 7.98 -2.91 -0.02 1.26 16 17 C 0.01 0.49 5.47 84.66 0.46 0.96 16 18 N -0.95 -60.02 13.96 21.45 0.30 -59.72 16 19 Si 0.94 44.02 27.47 68.60 1.88 45.90 16 20 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 21 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 22 H -0.25 -10.72 6.54 99.48 0.65 -10.07 16 23 H 0.05 1.23 8.14 -2.39 -0.02 1.22 16 24 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 26 H 0.08 2.85 6.79 -2.39 -0.02 2.84 16 27 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.09 3.66 7.14 -2.39 -0.02 3.65 16 31 H 0.08 2.35 7.79 -2.38 -0.02 2.33 16 32 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.07 2.48 8.09 -2.39 -0.02 2.46 16 37 H 0.02 1.04 6.31 -2.39 -0.02 1.03 16 38 H 0.02 1.09 6.57 -2.39 -0.02 1.07 16 39 H 0.26 15.54 8.31 -92.70 -0.77 14.77 16 Total: -1.00 -70.07 316.61 3.50 -66.58 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -0.94 Total: 21.05 kcal Atomic # 6 Polarization: -48.68 SS G_CDS: 3.19 Total: -45.49 kcal Atomic # 7 Polarization: -87.40 SS G_CDS: -0.64 Total: -88.04 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.88 Total: 45.90 kcal Total: -70.07 3.50 -66.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409437955.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.496 kcal (2) G-P(sol) polarization free energy of solvation -70.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds