Wall clock time and date at job start Mon Mar 30 2020 06:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.50698 * 109.47721 * 295.00119 * 4 2 1 6 6 N 1.34944 * 126.12931 * 264.69593 * 5 4 2 7 7 H 0.97004 * 126.03625 * 0.02799 * 6 5 4 8 8 N 1.40086 * 107.93068 * 179.89707 * 6 5 4 9 9 C 1.30839 * 108.19868 * 0.36150 * 8 6 5 10 10 C 1.50702 * 125.89485 * 179.81108 * 9 8 6 11 11 C 1.52999 * 117.49927 * 8.71036 * 10 9 8 12 12 C 1.52990 * 117.50277 * 300.05068 * 10 9 8 13 13 C 1.35317 * 126.12693 * 84.99293 * 5 4 2 14 14 C 1.50700 * 126.03937 * 359.95251 * 13 5 4 15 15 C 1.50705 * 109.47056 * 90.02075 * 14 13 5 16 16 H 1.07993 * 119.99901 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99801 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00177 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99688 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47088 * 59.99889 * 19 17 15 21 21 H 1.48501 * 109.46690 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47047 * 299.99443 * 19 17 15 23 23 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 25 25 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 26 26 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 27 27 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 28 28 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 29 29 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 30 30 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 31 31 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 32 32 H 1.09003 * 115.54562 * 154.37194 * 10 9 8 33 33 H 1.09003 * 117.50213 * 359.97438 * 11 10 9 34 34 H 1.09003 * 117.49813 * 145.01538 * 11 10 9 35 35 H 1.09008 * 117.50101 * 214.98148 * 12 10 9 36 36 H 1.09003 * 117.50047 * 359.97026 * 12 10 9 37 37 H 1.08999 * 109.47321 * 210.02274 * 14 13 5 38 38 H 1.08996 * 109.47099 * 330.02111 * 14 13 5 39 39 H 0.97006 * 120.00268 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6413 -2.1733 -1.1891 6 7 2.4032 -3.1893 -0.7328 7 1 3.3055 -3.1142 -0.3846 8 7 1.6599 -4.3711 -0.8479 9 6 0.4950 -4.0727 -1.3634 10 6 -0.6147 -5.0474 -1.6627 11 6 -0.4515 -6.4813 -1.1546 12 6 -0.3149 -6.1782 -2.6487 13 6 0.4572 -2.6927 -1.5882 14 6 -0.6982 -1.9206 -2.1713 15 6 -0.5571 -1.8614 -3.6705 16 1 0.2851 -2.3350 -4.1528 17 6 -1.5028 -1.2016 -4.4264 18 7 -2.5282 -0.6244 -3.8390 19 14 -1.3283 -1.1287 -6.2848 20 1 -1.3265 -2.5075 -6.8362 21 1 -2.4668 -0.3678 -6.8593 22 1 -0.0534 -0.4533 -6.6361 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5140 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 1.6768 1.9562 0.8901 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6053 -0.2617 -2.1370 31 1 3.1263 -0.6443 -1.2952 32 1 -1.6204 -4.6272 -1.6693 33 1 0.4586 -6.7198 -0.6041 34 1 -1.3500 -7.0046 -0.8273 35 1 -1.1236 -6.5022 -3.3039 36 1 0.6848 -6.2169 -3.0814 37 1 -1.6338 -2.4170 -1.9137 38 1 -0.7003 -0.9087 -1.7663 39 1 -3.1938 -0.1605 -4.3708 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409441606.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:19 Heat of formation + Delta-G solvation = 72.643216 kcal Electronic energy + Delta-G solvation = -18561.054189 eV Core-core repulsion = 15891.212888 eV Total energy + Delta-G solvation = -2669.841301 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.70676 -36.73215 -35.83339 -33.25846 -31.00577 -30.53470 -27.50722 -26.68891 -25.49632 -23.37316 -22.56250 -21.90410 -20.17515 -18.55504 -18.37774 -16.55035 -16.19420 -15.12421 -14.72092 -14.41727 -14.31044 -14.00610 -13.22702 -12.97322 -12.52315 -12.25039 -11.88865 -11.71532 -11.56505 -11.43147 -11.12046 -10.96213 -10.83725 -10.69519 -10.49693 -10.41425 -10.31892 -10.19013 -9.94191 -9.78653 -9.37358 -9.15091 -8.36564 -8.25474 -7.30419 -5.91361 -3.92313 2.54570 3.36709 3.41109 3.42387 3.50652 3.54643 4.48757 4.56098 5.02255 5.21568 5.25250 5.28784 5.35937 5.42723 5.54093 5.65798 5.70913 5.82882 5.96775 6.01718 6.03303 6.24319 6.24977 6.28958 6.39686 6.47983 6.51843 6.56582 6.61297 6.74547 6.76619 6.96777 7.06853 7.52505 7.75746 7.89741 8.02236 8.06582 8.48365 8.53839 9.12016 9.69602 11.17451 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.012342 B = 0.010956 C = 0.006648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.074072 B = 2555.053037 C = 4210.856276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.085 4.085 3 C -0.146 4.146 4 C -0.047 4.047 5 C 0.064 3.936 6 N -0.490 5.490 7 H 0.426 0.574 8 N -0.314 5.314 9 C 0.105 3.895 10 C -0.062 4.062 11 C -0.178 4.178 12 C -0.161 4.161 13 C -0.167 4.167 14 C 0.069 3.931 15 C -0.499 4.499 16 H 0.050 0.950 17 C 0.058 3.942 18 N -0.897 5.897 19 Si 0.885 3.115 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.279 1.279 23 H 0.072 0.928 24 H 0.040 0.960 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.060 0.940 32 H 0.125 0.875 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.021 0.979 38 H 0.049 0.951 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.855 -1.773 6.917 9.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.105 4.105 3 C -0.203 4.203 4 C -0.086 4.086 5 C -0.062 4.062 6 N -0.199 5.199 7 H 0.268 0.732 8 N -0.138 5.138 9 C -0.060 4.060 10 C -0.082 4.082 11 C -0.215 4.215 12 C -0.200 4.200 13 C -0.177 4.177 14 C 0.031 3.969 15 C -0.537 4.537 16 H 0.068 0.932 17 C -0.142 4.142 18 N -0.537 5.537 19 Si 0.714 3.286 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.205 1.205 23 H 0.090 0.910 24 H 0.059 0.941 25 H 0.091 0.909 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.118 0.882 31 H 0.079 0.921 32 H 0.142 0.858 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.039 0.961 38 H 0.067 0.933 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.415 -2.581 7.309 10.727 hybrid contribution 0.136 0.713 -1.293 1.483 sum 7.551 -1.868 6.016 9.834 Atomic orbital electron populations 1.22199 0.94017 1.03413 1.01428 1.21034 0.97271 0.95221 0.96926 1.21843 1.00145 0.96328 1.01990 1.20261 0.99682 0.88463 1.00214 1.20686 0.92750 0.91024 1.01731 1.45939 1.15205 1.04724 1.54048 0.73195 1.76987 1.05788 1.05251 1.25731 1.21185 0.92608 0.94026 0.98185 1.20211 0.96695 0.87036 1.04223 1.22964 1.03022 0.98316 0.97227 1.22882 1.02796 1.02099 0.92185 1.20460 0.98279 0.92591 1.06364 1.18093 0.89007 0.95248 0.94505 1.21095 1.08005 1.33091 0.91553 0.93203 1.24935 0.95451 0.95867 0.97942 1.69932 1.12225 1.36253 1.35241 0.86765 0.77367 0.78075 0.86437 1.20384 1.21435 1.20468 0.90961 0.94075 0.90924 0.92298 0.92918 0.93298 0.92172 0.88175 0.92145 0.85763 0.88623 0.89006 0.88584 0.89155 0.96080 0.93295 0.93098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 7.43 37.16 0.28 -2.32 16 2 C -0.09 -1.25 2.91 -90.62 -0.26 -1.51 16 3 C -0.15 -1.79 9.19 37.16 0.34 -1.45 16 4 C -0.05 -0.76 4.92 -27.89 -0.14 -0.90 16 5 C 0.06 1.20 6.07 -82.27 -0.50 0.71 16 6 N -0.49 -8.53 7.36 33.48 0.25 -8.29 16 7 H 0.43 5.79 8.96 -182.60 -1.64 4.15 16 8 N -0.31 -6.19 12.28 33.67 0.41 -5.77 16 9 C 0.10 2.20 6.75 -82.40 -0.56 1.64 16 10 C -0.06 -1.16 6.01 -91.78 -0.55 -1.71 16 11 C -0.18 -2.74 10.14 -26.70 -0.27 -3.02 16 12 C -0.16 -2.68 10.24 -26.70 -0.27 -2.96 16 13 C -0.17 -3.65 4.34 -105.05 -0.46 -4.11 16 14 C 0.07 1.71 4.19 -29.03 -0.12 1.59 16 15 C -0.50 -13.67 9.09 -34.44 -0.31 -13.98 16 16 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -25.78 13.29 55.43 0.74 -25.05 16 19 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H 0.07 1.38 5.32 -51.93 -0.28 1.10 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 1.37 6.87 -51.93 -0.36 1.01 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.10 1.85 8.02 -51.93 -0.42 1.43 16 31 H 0.06 0.82 8.14 -51.92 -0.42 0.39 16 32 H 0.12 2.40 7.52 -51.93 -0.39 2.01 16 33 H 0.10 1.50 7.90 -51.93 -0.41 1.09 16 34 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.10 1.44 8.14 -51.92 -0.42 1.02 16 36 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 37 H 0.02 0.56 7.45 -51.93 -0.39 0.17 16 38 H 0.05 1.21 3.93 -51.93 -0.20 1.01 16 39 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 LS Contribution 315.81 15.07 4.76 4.76 Total: -1.00 -29.99 315.81 -9.21 -39.20 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -7.42 Total: 5.19 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: -2.92 Total: -26.49 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 1.40 Total: -39.10 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.99 -9.21 -39.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409441606.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.839 kcal (2) G-P(sol) polarization free energy of solvation -29.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds