Wall clock time and date at job start Mon Mar 30 2020 06:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.50698 * 109.47721 * 295.00119 * 4 2 1 6 6 N 1.34944 * 126.12931 * 264.69593 * 5 4 2 7 7 H 0.97004 * 126.03625 * 0.02799 * 6 5 4 8 8 N 1.40086 * 107.93068 * 179.89707 * 6 5 4 9 9 C 1.30839 * 108.19868 * 0.36150 * 8 6 5 10 10 C 1.50702 * 125.89485 * 179.81108 * 9 8 6 11 11 C 1.52999 * 117.49927 * 8.71036 * 10 9 8 12 12 C 1.52990 * 117.50277 * 300.05068 * 10 9 8 13 13 C 1.35317 * 126.12693 * 84.99293 * 5 4 2 14 14 C 1.50700 * 126.03937 * 359.95251 * 13 5 4 15 15 C 1.50705 * 109.47056 * 90.02075 * 14 13 5 16 16 H 1.07993 * 119.99901 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99801 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00177 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99688 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47088 * 59.99889 * 19 17 15 21 21 H 1.48501 * 109.46690 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47047 * 299.99443 * 19 17 15 23 23 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 25 25 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 26 26 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 27 27 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 28 28 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 29 29 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 30 30 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 31 31 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 32 32 H 1.09003 * 115.54562 * 154.37194 * 10 9 8 33 33 H 1.09003 * 117.50213 * 359.97438 * 11 10 9 34 34 H 1.09003 * 117.49813 * 145.01538 * 11 10 9 35 35 H 1.09008 * 117.50101 * 214.98148 * 12 10 9 36 36 H 1.09003 * 117.50047 * 359.97026 * 12 10 9 37 37 H 1.08999 * 109.47321 * 210.02274 * 14 13 5 38 38 H 1.08996 * 109.47099 * 330.02111 * 14 13 5 39 39 H 0.97006 * 120.00268 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6413 -2.1733 -1.1891 6 7 2.4032 -3.1893 -0.7328 7 1 3.3055 -3.1142 -0.3846 8 7 1.6599 -4.3711 -0.8479 9 6 0.4950 -4.0727 -1.3634 10 6 -0.6147 -5.0474 -1.6627 11 6 -0.4515 -6.4813 -1.1546 12 6 -0.3149 -6.1782 -2.6487 13 6 0.4572 -2.6927 -1.5882 14 6 -0.6982 -1.9206 -2.1713 15 6 -0.5571 -1.8614 -3.6705 16 1 0.2851 -2.3350 -4.1528 17 6 -1.5028 -1.2016 -4.4264 18 7 -2.5282 -0.6244 -3.8390 19 14 -1.3283 -1.1287 -6.2848 20 1 -1.3265 -2.5075 -6.8362 21 1 -2.4668 -0.3678 -6.8593 22 1 -0.0534 -0.4533 -6.6361 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5140 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 1.6768 1.9562 0.8901 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6053 -0.2617 -2.1370 31 1 3.1263 -0.6443 -1.2952 32 1 -1.6204 -4.6272 -1.6693 33 1 0.4586 -6.7198 -0.6041 34 1 -1.3500 -7.0046 -0.8273 35 1 -1.1236 -6.5022 -3.3039 36 1 0.6848 -6.2169 -3.0814 37 1 -1.6338 -2.4170 -1.9137 38 1 -0.7003 -0.9087 -1.7663 39 1 -3.1938 -0.1605 -4.3708 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409441606.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:18 Heat of formation + Delta-G solvation = 56.162799 kcal Electronic energy + Delta-G solvation = -18561.768833 eV Core-core repulsion = 15891.212888 eV Total energy + Delta-G solvation = -2670.555945 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.23815 -38.07971 -37.14535 -35.26816 -32.79295 -32.00951 -29.18041 -27.96892 -27.10644 -24.82107 -24.50566 -23.19282 -21.45000 -20.06240 -19.91664 -18.36235 -18.00939 -16.49825 -16.40805 -16.01871 -15.80200 -15.33885 -14.57356 -14.34226 -14.26047 -13.94132 -13.54189 -13.32224 -12.91773 -12.83583 -12.72312 -12.61883 -12.37242 -12.15491 -12.02843 -11.82207 -11.75414 -11.63058 -11.50087 -11.39237 -11.18478 -10.93401 -10.37866 -9.82332 -8.96914 -8.03910 -6.13532 1.02232 1.41844 1.43295 1.50845 1.92461 2.11717 2.49692 3.13062 3.24829 3.64206 3.89828 3.99100 4.01095 4.09392 4.16411 4.27528 4.42990 4.62696 4.78145 4.78440 4.87038 4.90803 4.94662 5.03041 5.06806 5.12155 5.16245 5.19087 5.30388 5.30979 5.45306 5.52340 5.58281 5.61978 5.89308 5.92328 6.01490 6.42697 6.64242 6.94718 6.97476 7.51761 9.02573 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.012342 B = 0.010956 C = 0.006648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.074072 B = 2555.053037 C = 4210.856276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.078 4.078 3 C -0.141 4.141 4 C -0.046 4.046 5 C 0.082 3.918 6 N -0.472 5.472 7 H 0.446 0.554 8 N -0.320 5.320 9 C 0.093 3.907 10 C -0.098 4.098 11 C -0.145 4.145 12 C -0.158 4.158 13 C -0.210 4.210 14 C 0.085 3.915 15 C -0.509 4.509 16 H 0.038 0.962 17 C 0.012 3.988 18 N -0.926 5.926 19 Si 0.945 3.055 20 H -0.275 1.275 21 H -0.283 1.283 22 H -0.271 1.271 23 H 0.044 0.956 24 H 0.059 0.941 25 H 0.043 0.957 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.119 0.881 35 H 0.110 0.890 36 H 0.082 0.918 37 H -0.013 1.013 38 H 0.045 0.955 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.721 -1.926 7.306 11.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.097 4.097 3 C -0.198 4.198 4 C -0.085 4.085 5 C -0.046 4.046 6 N -0.183 5.183 7 H 0.292 0.708 8 N -0.144 5.144 9 C -0.071 4.071 10 C -0.119 4.119 11 C -0.183 4.183 12 C -0.196 4.196 13 C -0.221 4.221 14 C 0.047 3.953 15 C -0.548 4.548 16 H 0.056 0.944 17 C -0.186 4.186 18 N -0.567 5.567 19 Si 0.771 3.229 20 H -0.201 1.201 21 H -0.208 1.208 22 H -0.196 1.196 23 H 0.063 0.937 24 H 0.078 0.922 25 H 0.062 0.938 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.115 0.885 32 H 0.124 0.876 33 H 0.114 0.886 34 H 0.137 0.863 35 H 0.129 0.871 36 H 0.101 0.899 37 H 0.005 0.995 38 H 0.063 0.937 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.314 -2.749 7.711 12.400 hybrid contribution -0.431 0.767 -1.362 1.622 sum 8.883 -1.982 6.349 11.097 Atomic orbital electron populations 1.22091 0.96269 1.01415 1.00890 1.20996 0.95164 0.96981 0.96539 1.21800 1.01602 0.94227 1.02151 1.20352 1.01798 0.86439 0.99936 1.20942 0.91775 0.92369 0.99488 1.45916 1.15769 1.03727 1.52921 0.70810 1.76928 1.05491 1.06026 1.25989 1.21437 0.93435 0.94030 0.98196 1.20240 0.95527 0.88465 1.07631 1.23017 1.04122 0.95068 0.96051 1.22943 1.02863 1.00612 0.93221 1.20302 0.98898 0.93456 1.09435 1.17767 0.88977 0.95096 0.93421 1.21328 1.07567 1.32740 0.93125 0.94403 1.25659 0.95125 0.95542 1.02274 1.70047 1.12903 1.36950 1.36819 0.85804 0.77687 0.78144 0.81227 1.20084 1.20806 1.19606 0.93718 0.92175 0.93778 0.90733 0.91595 0.90920 0.93259 0.90891 0.88480 0.87559 0.88550 0.86278 0.87123 0.89894 0.99467 0.93716 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.13 7.43 71.98 0.54 -4.59 16 2 C -0.08 -2.14 2.91 -10.79 -0.03 -2.17 16 3 C -0.14 -3.09 9.19 71.98 0.66 -2.43 16 4 C -0.05 -1.43 4.92 29.85 0.15 -1.28 16 5 C 0.08 3.05 6.07 41.41 0.25 3.30 16 6 N -0.47 -15.64 7.36 -48.00 -0.35 -15.99 16 7 H 0.45 10.81 8.96 -213.32 -1.91 8.90 16 8 N -0.32 -12.36 12.28 -47.38 -0.58 -12.94 16 9 C 0.09 3.97 6.75 43.10 0.29 4.26 16 10 C -0.10 -3.79 6.01 -11.54 -0.07 -3.86 16 11 C -0.15 -4.30 10.14 30.62 0.31 -3.99 16 12 C -0.16 -5.19 10.24 30.61 0.31 -4.87 16 13 C -0.21 -9.48 4.34 -20.14 -0.09 -9.57 16 14 C 0.09 4.45 4.19 29.10 0.12 4.58 16 15 C -0.51 -28.89 9.09 25.60 0.23 -28.66 16 16 H 0.04 2.19 7.74 -2.91 -0.02 2.16 16 17 C 0.01 0.66 5.46 84.65 0.46 1.12 16 18 N -0.93 -54.88 13.29 21.45 0.28 -54.59 16 19 Si 0.95 44.53 29.54 68.60 2.03 46.56 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 23 H 0.04 1.76 5.32 -2.39 -0.01 1.75 16 24 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.04 1.74 6.87 -2.39 -0.02 1.72 16 26 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.07 2.71 8.02 -2.39 -0.02 2.69 16 31 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 32 H 0.11 4.38 7.52 -2.39 -0.02 4.36 16 33 H 0.10 2.86 7.90 -2.39 -0.02 2.84 16 34 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 35 H 0.11 3.24 8.14 -2.38 -0.02 3.22 16 36 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 37 H -0.01 -0.75 7.45 -2.39 -0.02 -0.77 16 38 H 0.04 2.35 3.93 -2.39 -0.01 2.34 16 39 H 0.26 14.69 8.31 -92.70 -0.77 13.92 16 Total: -1.00 -66.35 315.81 3.64 -62.71 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: -0.87 Total: 22.40 kcal Atomic # 6 Polarization: -51.28 SS G_CDS: 3.14 Total: -48.14 kcal Atomic # 7 Polarization: -82.88 SS G_CDS: -0.65 Total: -83.53 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -66.35 3.64 -62.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409441606.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.873 kcal (2) G-P(sol) polarization free energy of solvation -66.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds