Wall clock time and date at job start Mon Mar 30 2020 05:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.46885 * 2 1 4 4 C 1.38677 * 120.41759 * 89.99993 * 3 2 1 5 5 C 1.38620 * 118.41820 * 180.02562 * 4 3 2 6 6 C 1.38231 * 119.16663 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.62122 * 179.97438 * 6 5 4 8 8 N 1.46894 * 109.46933 * 95.00153 * 7 6 5 9 9 C 1.46904 * 110.99621 * 176.16116 * 8 7 6 10 10 H 1.09000 * 109.47333 * 33.66854 * 9 8 7 11 11 C 1.50696 * 109.47031 * 273.66856 * 9 8 7 12 12 H 1.07997 * 120.00137 * 0.02562 * 11 9 8 13 13 C 1.37879 * 119.99793 * 180.02562 * 11 9 8 14 14 N 1.31514 * 120.00222 * 359.97438 * 13 11 9 15 15 Si 1.86808 * 120.00037 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.46851 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47066 * 119.99911 * 15 13 11 18 18 H 1.48505 * 109.46775 * 239.99747 * 15 13 11 19 19 C 1.52999 * 109.46995 * 153.66913 * 9 8 7 20 20 C 1.53000 * 109.47179 * 294.86765 * 19 9 8 21 21 N 1.31855 * 120.75803 * 0.02562 * 6 5 4 22 22 C 1.31879 * 121.72799 * 359.70128 * 21 6 5 23 23 H 1.09001 * 109.47837 * 59.99830 * 1 2 3 24 24 H 1.09005 * 109.47208 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47444 * 299.99643 * 1 2 3 26 26 H 1.09000 * 109.46953 * 240.00484 * 2 1 3 27 27 H 1.08996 * 109.47394 * 120.00131 * 2 1 3 28 28 H 1.08004 * 120.78533 * 359.97438 * 4 3 2 29 29 H 1.08007 * 120.41847 * 179.97438 * 5 4 3 30 30 H 1.08998 * 109.47001 * 215.00500 * 7 6 5 31 31 H 1.09002 * 109.46753 * 334.99990 * 7 6 5 32 32 H 1.00905 * 111.00220 * 300.11378 * 8 7 6 33 33 H 0.96996 * 120.00196 * 180.02562 * 14 13 11 34 34 H 1.09007 * 109.47315 * 54.86707 * 19 9 8 35 35 H 1.09002 * 109.47341 * 174.86520 * 19 9 8 36 36 H 1.09005 * 109.47074 * 186.13050 * 20 19 9 37 37 H 1.09000 * 109.46791 * 306.12697 * 20 19 9 38 38 H 1.08997 * 109.47355 * 66.13087 * 20 19 9 39 39 H 1.07999 * 119.62285 * 180.31372 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2663 2.0828 1.1959 5 6 2.7275 3.3892 1.1475 6 6 2.9368 3.9846 -0.0823 7 6 3.4375 5.4045 -0.1468 8 7 4.8996 5.4021 -0.2890 9 6 5.4153 6.7686 -0.4467 10 1 4.8014 7.4578 0.1331 11 6 5.3699 7.1578 -1.9018 12 1 4.9951 6.4601 -2.6360 13 6 5.8070 8.4047 -2.2958 14 7 6.2630 9.2546 -1.4017 15 14 5.7501 8.8876 -4.0995 16 1 5.1985 7.7622 -4.8960 17 1 4.8845 10.0828 -4.2649 18 1 7.1228 9.2014 -4.5714 19 6 6.8603 6.8291 0.0526 20 6 6.8913 6.5590 1.5582 21 7 2.7025 3.3248 -1.1996 22 6 2.2685 2.0795 -1.1916 23 1 -0.3635 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.0925 1.5925 2.1424 29 1 2.9201 3.9352 2.0593 30 1 2.9899 5.9090 -1.0031 31 1 3.1623 5.9287 0.7684 32 1 5.3382 4.9380 0.4922 33 1 6.5702 10.1319 -1.6788 34 1 7.4551 6.0757 -0.4640 35 1 7.2729 7.8179 -0.1478 36 1 7.9037 6.7089 1.9335 37 1 6.2111 7.2440 2.0643 38 1 6.5814 5.5317 1.7496 39 1 2.0925 1.5695 -2.1272 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000520248371.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:47 Heat of formation + Delta-G solvation = 16.624968 kcal Electronic energy + Delta-G solvation = -17655.291386 eV Core-core repulsion = 14983.020952 eV Total energy + Delta-G solvation = -2672.270434 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.11143 -36.43909 -34.78294 -32.60780 -31.83611 -31.26162 -29.37144 -26.77852 -25.08523 -23.60307 -22.95799 -22.17835 -20.76602 -19.53365 -16.58145 -16.18650 -16.13054 -15.27940 -14.81965 -14.36618 -14.09117 -13.98660 -13.64707 -13.20295 -13.04953 -12.80654 -12.50741 -12.30580 -11.99464 -11.74737 -11.41125 -11.25160 -11.15756 -10.94550 -10.79094 -10.53016 -9.90612 -9.75586 -9.62874 -9.59584 -9.05181 -9.02122 -8.58262 -8.29564 -7.19516 -5.91336 -3.94435 1.28903 1.49122 3.36690 3.44372 3.51913 3.97959 4.51361 4.53490 4.75919 4.76544 4.97909 5.07327 5.19080 5.31571 5.37050 5.37971 5.60944 5.66421 5.69111 5.87048 5.87910 6.00403 6.10433 6.16310 6.17313 6.32844 6.36729 6.42177 6.58367 6.85325 6.93010 7.09236 7.20559 7.49658 7.80647 7.99050 8.29306 8.37331 8.43329 8.78712 9.15302 9.70478 11.14238 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.028435 B = 0.004848 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.459599 B = 5774.565354 C = 6519.299036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.077 4.077 3 C -0.151 4.151 4 C -0.076 4.076 5 C -0.171 4.171 6 C 0.147 3.853 7 C 0.113 3.887 8 N -0.675 5.675 9 C 0.219 3.781 10 H 0.003 0.997 11 C -0.489 4.489 12 H 0.065 0.935 13 C 0.054 3.946 14 N -0.899 5.899 15 Si 0.894 3.106 16 H -0.272 1.272 17 H -0.286 1.286 18 H -0.286 1.286 19 C -0.126 4.126 20 C -0.150 4.150 21 N -0.459 5.459 22 C 0.102 3.898 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.127 0.873 29 H 0.130 0.870 30 H 0.092 0.908 31 H 0.031 0.969 32 H 0.316 0.684 33 H 0.258 0.742 34 H 0.041 0.959 35 H 0.101 0.899 36 H 0.037 0.963 37 H 0.042 0.958 38 H 0.034 0.966 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.392 -14.713 6.485 18.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.154 4.154 4 C -0.102 4.102 5 C -0.191 4.191 6 C 0.009 3.991 7 C -0.017 4.017 8 N -0.307 5.307 9 C 0.112 3.888 10 H 0.021 0.979 11 C -0.528 4.528 12 H 0.083 0.917 13 C -0.146 4.146 14 N -0.539 5.539 15 Si 0.723 3.277 16 H -0.197 1.197 17 H -0.213 1.213 18 H -0.212 1.212 19 C -0.164 4.164 20 C -0.208 4.208 21 N -0.167 5.167 22 C -0.056 4.056 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.145 0.855 29 H 0.148 0.852 30 H 0.110 0.890 31 H 0.049 0.951 32 H 0.133 0.867 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.119 0.881 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.190 -14.197 5.002 17.136 hybrid contribution -0.188 0.242 0.852 0.905 sum -8.377 -13.955 5.854 17.297 Atomic orbital electron populations 1.21760 0.94843 1.01559 1.02262 1.20415 0.95991 0.92201 1.02853 1.20837 1.02435 0.97621 0.94474 1.21356 0.96756 0.94301 0.97818 1.22014 1.01975 0.95894 0.99229 1.21549 0.92848 0.96941 0.87779 1.20748 0.91383 0.88570 1.01020 1.60643 1.01436 1.22322 1.46283 1.19196 0.90989 0.82189 0.96387 0.97919 1.21295 1.40199 0.98595 0.92728 0.91726 1.24956 0.95659 0.96505 0.97494 1.69880 1.43952 1.07214 1.32872 0.86489 0.77467 0.78290 0.85490 1.19675 1.21286 1.21215 1.21776 0.99699 1.03860 0.91084 1.21887 0.99846 0.99238 0.99793 1.67601 1.09844 1.07924 1.31301 1.22678 0.95014 0.90790 0.97136 0.92460 0.92454 0.92703 0.90858 0.91174 0.85477 0.85227 0.88956 0.95068 0.86737 0.93223 0.94004 0.88122 0.94349 0.93867 0.94684 0.83380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.89 37.16 0.37 -0.78 16 2 C -0.08 -0.66 6.09 -27.88 -0.17 -0.83 16 3 C -0.15 -1.82 5.15 -104.48 -0.54 -2.36 16 4 C -0.08 -0.92 9.86 -39.28 -0.39 -1.31 16 5 C -0.17 -2.42 9.72 -39.44 -0.38 -2.81 16 6 C 0.15 2.58 6.33 -82.59 -0.52 2.05 16 7 C 0.11 2.23 5.76 -4.98 -0.03 2.20 16 8 N -0.68 -14.84 6.27 -109.22 -0.68 -15.52 16 9 C 0.22 5.52 2.03 -68.86 -0.14 5.38 16 10 H 0.00 0.09 7.83 -51.93 -0.41 -0.32 16 11 C -0.49 -13.81 8.62 -34.44 -0.30 -14.11 16 12 H 0.06 1.90 7.81 -52.49 -0.41 1.49 16 13 C 0.05 1.51 5.29 -17.82 -0.09 1.42 16 14 N -0.90 -25.79 11.29 55.43 0.63 -25.16 16 15 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 16 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 C -0.13 -2.99 5.35 -26.73 -0.14 -3.13 16 20 C -0.15 -2.90 9.63 37.16 0.36 -2.55 16 21 N -0.46 -8.33 10.27 -9.47 -0.10 -8.42 16 22 C 0.10 1.46 10.86 -17.55 -0.19 1.27 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 27 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 28 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 29 H 0.13 1.60 8.06 -52.48 -0.42 1.17 16 30 H 0.09 2.04 7.99 -51.93 -0.41 1.63 16 31 H 0.03 0.57 8.03 -51.93 -0.42 0.16 16 32 H 0.32 6.33 6.60 -39.29 -0.26 6.07 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.04 1.00 8.14 -51.92 -0.42 0.58 16 35 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 36 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.03 0.61 6.65 -51.93 -0.35 0.26 16 39 H 0.15 1.77 8.06 -52.49 -0.42 1.34 16 LS Contribution 321.66 15.07 4.85 4.85 Total: -1.00 -30.27 321.66 -8.84 -39.11 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -6.34 Total: 3.73 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -2.17 Total: -15.54 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -0.16 Total: -49.10 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.27 -8.84 -39.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520248371.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.735 kcal (2) G-P(sol) polarization free energy of solvation -30.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds