Wall clock time and date at job start Mon Mar 30 2020 05:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.46885 * 2 1 4 4 C 1.38677 * 120.41759 * 89.99993 * 3 2 1 5 5 C 1.38620 * 118.41820 * 180.02562 * 4 3 2 6 6 C 1.38231 * 119.16663 * 0.02562 * 5 4 3 7 7 C 1.50699 * 119.62122 * 179.97438 * 6 5 4 8 8 N 1.46894 * 109.46933 * 95.00153 * 7 6 5 9 9 C 1.46904 * 110.99621 * 176.16116 * 8 7 6 10 10 H 1.09000 * 109.47333 * 33.66854 * 9 8 7 11 11 C 1.50696 * 109.47031 * 273.66856 * 9 8 7 12 12 H 1.07997 * 120.00137 * 0.02562 * 11 9 8 13 13 C 1.37879 * 119.99793 * 180.02562 * 11 9 8 14 14 N 1.31514 * 120.00222 * 359.97438 * 13 11 9 15 15 Si 1.86808 * 120.00037 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.46851 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47066 * 119.99911 * 15 13 11 18 18 H 1.48505 * 109.46775 * 239.99747 * 15 13 11 19 19 C 1.52999 * 109.46995 * 153.66913 * 9 8 7 20 20 C 1.53000 * 109.47179 * 294.86765 * 19 9 8 21 21 N 1.31855 * 120.75803 * 0.02562 * 6 5 4 22 22 C 1.31879 * 121.72799 * 359.70128 * 21 6 5 23 23 H 1.09001 * 109.47837 * 59.99830 * 1 2 3 24 24 H 1.09005 * 109.47208 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47444 * 299.99643 * 1 2 3 26 26 H 1.09000 * 109.46953 * 240.00484 * 2 1 3 27 27 H 1.08996 * 109.47394 * 120.00131 * 2 1 3 28 28 H 1.08004 * 120.78533 * 359.97438 * 4 3 2 29 29 H 1.08007 * 120.41847 * 179.97438 * 5 4 3 30 30 H 1.08998 * 109.47001 * 215.00500 * 7 6 5 31 31 H 1.09002 * 109.46753 * 334.99990 * 7 6 5 32 32 H 1.00905 * 111.00220 * 300.11378 * 8 7 6 33 33 H 0.96996 * 120.00196 * 180.02562 * 14 13 11 34 34 H 1.09007 * 109.47315 * 54.86707 * 19 9 8 35 35 H 1.09002 * 109.47341 * 174.86520 * 19 9 8 36 36 H 1.09005 * 109.47074 * 186.13050 * 20 19 9 37 37 H 1.09000 * 109.46791 * 306.12697 * 20 19 9 38 38 H 1.08997 * 109.47355 * 66.13087 * 20 19 9 39 39 H 1.07999 * 119.62285 * 180.31372 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2663 2.0828 1.1959 5 6 2.7275 3.3892 1.1475 6 6 2.9368 3.9846 -0.0823 7 6 3.4375 5.4045 -0.1468 8 7 4.8996 5.4021 -0.2890 9 6 5.4153 6.7686 -0.4467 10 1 4.8014 7.4578 0.1331 11 6 5.3699 7.1578 -1.9018 12 1 4.9951 6.4601 -2.6360 13 6 5.8070 8.4047 -2.2958 14 7 6.2630 9.2546 -1.4017 15 14 5.7501 8.8876 -4.0995 16 1 5.1985 7.7622 -4.8960 17 1 4.8845 10.0828 -4.2649 18 1 7.1228 9.2014 -4.5714 19 6 6.8603 6.8291 0.0526 20 6 6.8913 6.5590 1.5582 21 7 2.7025 3.3248 -1.1996 22 6 2.2685 2.0795 -1.1916 23 1 -0.3635 0.5138 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 2.0925 1.5925 2.1424 29 1 2.9201 3.9352 2.0593 30 1 2.9899 5.9090 -1.0031 31 1 3.1623 5.9287 0.7684 32 1 5.3382 4.9380 0.4922 33 1 6.5702 10.1319 -1.6788 34 1 7.4551 6.0757 -0.4640 35 1 7.2729 7.8179 -0.1478 36 1 7.9037 6.7089 1.9335 37 1 6.2111 7.2440 2.0643 38 1 6.5814 5.5317 1.7496 39 1 2.0925 1.5695 -2.1272 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000520248371.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:46 Heat of formation + Delta-G solvation = -2.241919 kcal Electronic energy + Delta-G solvation = -17656.109516 eV Core-core repulsion = 14983.020952 eV Total energy + Delta-G solvation = -2673.088564 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.23156 -38.20591 -35.85948 -34.39861 -33.25642 -32.67838 -30.59595 -28.58927 -26.56183 -24.71999 -24.50987 -23.45882 -21.85393 -21.45629 -18.40015 -17.60910 -17.37874 -16.80551 -16.21728 -15.92428 -15.74029 -14.99781 -14.72835 -14.66913 -14.23063 -14.19756 -13.86073 -13.67384 -13.32941 -13.09145 -13.01349 -12.77820 -12.65716 -12.48505 -12.13959 -11.99421 -11.81036 -11.57520 -11.47638 -11.05732 -10.67586 -10.43360 -10.19357 -9.70506 -9.01768 -8.07188 -6.18353 0.18307 0.44473 1.38899 1.40748 1.53961 2.44232 2.83212 3.17588 3.39382 3.72713 3.88761 3.98353 4.09349 4.12024 4.37390 4.48825 4.53647 4.55677 4.56799 4.58815 4.70345 4.80386 4.85709 5.02219 5.08400 5.09887 5.11715 5.21890 5.25968 5.37157 5.41169 5.46330 5.57807 5.74631 5.85990 5.89208 6.34771 6.47213 6.94496 6.96440 7.22001 7.50320 8.96028 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.028435 B = 0.004848 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.459599 B = 5774.565354 C = 6519.299036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.074 4.074 3 C -0.136 4.136 4 C -0.072 4.072 5 C -0.166 4.166 6 C 0.116 3.884 7 C 0.120 3.880 8 N -0.679 5.679 9 C 0.226 3.774 10 H -0.025 1.025 11 C -0.512 4.512 12 H 0.042 0.958 13 C 0.012 3.988 14 N -0.918 5.918 15 Si 0.954 3.046 16 H -0.277 1.277 17 H -0.279 1.279 18 H -0.277 1.277 19 C -0.120 4.120 20 C -0.138 4.138 21 N -0.504 5.504 22 C 0.084 3.916 23 H 0.047 0.953 24 H 0.075 0.925 25 H 0.053 0.947 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.166 0.834 29 H 0.149 0.851 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.328 0.672 33 H 0.261 0.739 34 H 0.033 0.967 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.040 0.960 38 H 0.057 0.943 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.895 -16.938 7.761 20.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.138 4.138 4 C -0.098 4.098 5 C -0.187 4.187 6 C -0.022 4.022 7 C -0.010 4.010 8 N -0.312 5.312 9 C 0.118 3.882 10 H -0.007 1.007 11 C -0.550 4.550 12 H 0.060 0.940 13 C -0.186 4.186 14 N -0.558 5.558 15 Si 0.780 3.220 16 H -0.201 1.201 17 H -0.204 1.204 18 H -0.203 1.203 19 C -0.159 4.159 20 C -0.196 4.196 21 N -0.213 5.213 22 C -0.074 4.074 23 H 0.066 0.934 24 H 0.094 0.906 25 H 0.072 0.928 26 H 0.101 0.899 27 H 0.108 0.892 28 H 0.183 0.817 29 H 0.166 0.834 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.146 0.854 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -8.695 -16.432 6.291 19.627 hybrid contribution -0.101 0.835 0.454 0.956 sum -8.796 -15.597 6.745 19.134 Atomic orbital electron populations 1.21747 0.94044 1.02676 1.01782 1.20513 0.96480 0.89867 1.04343 1.21236 0.99997 0.99031 0.93543 1.21797 0.95218 0.93339 0.99447 1.22163 1.01222 0.96931 0.98352 1.21180 0.95761 0.95958 0.89279 1.20572 0.89772 0.90843 0.99811 1.60481 1.03089 1.20381 1.47220 1.18962 0.91596 0.83256 0.94366 1.00740 1.21482 1.40714 0.98788 0.94053 0.93955 1.25630 0.95258 0.96397 1.01342 1.69987 1.44055 1.07402 1.34382 0.85571 0.77795 0.77797 0.80844 1.20147 1.20448 1.20255 1.21589 0.98145 1.01793 0.94369 1.21745 1.01224 1.00517 0.96094 1.67431 1.11490 1.09951 1.32470 1.23038 0.95351 0.89912 0.99100 0.93430 0.90576 0.92759 0.89923 0.89208 0.81652 0.83375 0.92722 0.93855 0.85353 0.92985 0.94805 0.91163 0.92304 0.94095 0.92430 0.81848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.89 71.98 0.71 -1.08 16 2 C -0.07 -1.01 6.09 29.85 0.18 -0.83 16 3 C -0.14 -2.91 5.15 -19.77 -0.10 -3.01 16 4 C -0.07 -1.51 9.86 22.47 0.22 -1.29 16 5 C -0.17 -4.43 9.72 22.36 0.22 -4.21 16 6 C 0.12 4.09 6.33 42.55 0.27 4.36 16 7 C 0.12 4.94 5.76 85.56 0.49 5.44 16 8 N -0.68 -30.66 6.27 -499.48 -3.13 -33.79 16 9 C 0.23 11.80 2.03 44.17 0.09 11.89 16 10 H -0.02 -1.41 7.83 -2.39 -0.02 -1.43 16 11 C -0.51 -30.08 8.62 25.60 0.22 -29.86 16 12 H 0.04 2.61 7.81 -2.91 -0.02 2.59 16 13 C 0.01 0.68 5.29 84.66 0.45 1.13 16 14 N -0.92 -53.81 11.29 21.45 0.24 -53.57 16 15 Si 0.95 46.11 29.54 68.60 2.03 48.14 16 16 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 17 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 18 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 19 C -0.12 -5.81 5.35 30.59 0.16 -5.65 16 20 C -0.14 -5.19 9.63 71.98 0.69 -4.49 16 21 N -0.50 -18.68 10.27 -183.89 -1.89 -20.57 16 22 C 0.08 2.34 10.86 84.67 0.92 3.26 16 23 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 25 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.08 1.01 8.09 -2.39 -0.02 0.99 16 27 H 0.09 0.94 8.10 -2.39 -0.02 0.92 16 28 H 0.17 2.20 8.06 -2.91 -0.02 2.17 16 29 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 30 H 0.05 2.61 7.99 -2.39 -0.02 2.59 16 31 H 0.04 1.64 8.03 -2.39 -0.02 1.62 16 32 H 0.33 13.12 6.60 -89.69 -0.59 12.52 16 33 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 34 H 0.03 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.07 3.83 5.95 -2.39 -0.01 3.82 16 36 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.06 1.88 6.65 -2.39 -0.02 1.87 16 39 H 0.16 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -68.21 321.66 2.20 -66.01 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.42 Total: 18.14 kcal Atomic # 6 Polarization: -28.88 SS G_CDS: 4.53 Total: -24.35 kcal Atomic # 7 Polarization: -103.15 SS G_CDS: -4.78 Total: -107.93 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -68.21 2.20 -66.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520248371.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.764 kcal (2) G-P(sol) polarization free energy of solvation -68.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds