Wall clock time and date at job start Mon Mar 30 2020 05:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38224 * 120.41881 * 2 1 4 4 N 1.31866 * 120.76358 * 179.74749 * 3 2 1 5 5 C 1.31882 * 121.72117 * 0.55667 * 4 3 2 6 6 C 1.50700 * 119.61331 * 179.71218 * 5 4 3 7 7 C 1.53003 * 109.47087 * 269.73008 * 6 5 4 8 8 N 1.46895 * 109.47339 * 180.02562 * 7 6 5 9 9 C 1.46902 * 111.00561 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.46719 * 34.99912 * 9 8 7 11 11 C 1.52997 * 109.47094 * 275.00137 * 9 8 7 12 12 C 1.50697 * 109.47181 * 154.99698 * 9 8 7 13 13 H 1.07999 * 120.00055 * 0.02562 * 12 9 8 14 14 C 1.37878 * 119.99687 * 180.02562 * 12 9 8 15 15 N 1.31511 * 120.00458 * 359.97438 * 14 12 9 16 16 Si 1.86805 * 119.99926 * 180.02562 * 14 12 9 17 17 H 1.48506 * 109.46872 * 59.99743 * 16 14 12 18 18 H 1.48503 * 109.47008 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.46914 * 299.99916 * 16 14 12 20 20 C 1.38182 * 120.76827 * 359.44316 * 5 4 3 21 21 C 1.50694 * 120.41935 * 180.29637 * 20 5 4 22 22 C 1.38634 * 120.41908 * 180.02562 * 2 1 3 23 23 H 1.09003 * 109.47115 * 269.98496 * 1 2 3 24 24 H 1.09000 * 109.46707 * 29.98027 * 1 2 3 25 25 H 1.09001 * 109.46785 * 149.98274 * 1 2 3 26 26 H 1.08000 * 119.61807 * 0.03775 * 3 2 1 27 27 H 1.08994 * 109.47031 * 149.73497 * 6 5 4 28 28 H 1.08997 * 109.47194 * 29.72584 * 6 5 4 29 29 H 1.09004 * 109.47337 * 60.00218 * 7 6 5 30 30 H 1.09001 * 109.47413 * 300.00155 * 7 6 5 31 31 H 1.00902 * 110.99823 * 303.95513 * 8 7 6 32 32 H 1.09002 * 109.47153 * 299.99508 * 11 9 8 33 33 H 1.09001 * 109.46832 * 179.97438 * 11 9 8 34 34 H 1.09004 * 109.47261 * 59.99681 * 11 9 8 35 35 H 0.96999 * 120.00480 * 179.97438 * 15 14 12 36 36 H 1.08999 * 109.47393 * 89.99729 * 21 20 5 37 37 H 1.09007 * 109.47334 * 209.99935 * 21 20 5 38 38 H 1.09001 * 109.46963 * 329.99276 * 21 20 5 39 39 H 1.07992 * 120.78776 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5255 1.1999 0.0050 5 6 4.2257 0.0823 -0.0008 6 6 5.7313 0.1469 -0.0012 7 6 6.2404 0.1689 -1.4439 8 7 7.7080 0.2311 -1.4444 9 6 8.2336 0.2532 -2.8160 10 1 7.5533 0.8142 -3.4568 11 6 8.3597 -1.1798 -3.3369 12 6 9.5890 0.9118 -2.8240 13 1 10.0174 1.2770 -1.9023 14 6 10.2823 1.0480 -4.0080 15 7 9.7609 0.6028 -5.1303 16 14 11.9628 1.8638 -4.0179 17 1 12.8895 1.0986 -3.1454 18 1 12.4940 1.8861 -5.4044 19 1 11.8409 3.2543 -3.5114 20 6 3.5948 -1.1471 -0.0008 21 6 4.4027 -2.4192 -0.0006 22 6 2.2089 -1.1955 -0.0005 23 1 -0.3633 -0.0003 1.0277 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8899 -0.5141 26 1 1.6675 2.1276 0.0006 27 1 6.1325 -0.7268 0.5123 28 1 6.0563 1.0515 0.5125 29 1 5.8391 1.0426 -1.9575 30 1 5.9153 -0.7358 -1.9578 31 1 8.0363 1.0270 -0.9182 32 1 9.0400 -1.7408 -2.6962 33 1 8.7493 -1.1634 -4.3548 34 1 7.3793 -1.6561 -3.3311 35 1 10.2484 0.6990 -5.9633 36 1 4.5974 -2.7259 1.0270 37 1 3.8462 -3.2031 -0.5145 38 1 5.3487 -2.2488 -0.5145 39 1 1.6888 -2.1419 -0.0014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594536885.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:20 Heat of formation + Delta-G solvation = 12.201487 kcal Electronic energy + Delta-G solvation = -17567.368948 eV Core-core repulsion = 14894.906697 eV Total energy + Delta-G solvation = -2672.462251 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.44612 -36.31395 -34.43634 -33.57530 -32.57704 -30.46121 -27.93933 -27.43859 -25.80368 -25.05890 -23.04118 -21.77181 -20.53166 -19.72474 -16.95132 -16.50398 -16.07375 -14.87057 -14.69037 -14.44005 -14.38081 -13.70982 -13.46116 -13.19170 -13.09433 -12.72685 -12.54496 -12.52849 -12.34341 -12.20628 -11.74976 -11.25127 -11.10727 -10.92907 -10.70029 -10.64823 -10.19243 -10.08091 -9.92437 -9.54743 -9.32396 -8.81294 -8.53744 -8.44046 -7.24382 -5.99507 -4.05982 1.10225 1.29271 3.33673 3.37660 3.40626 3.74799 4.35359 4.43836 4.64237 4.70995 4.87516 4.93699 5.14274 5.31007 5.34315 5.34508 5.48046 5.55998 5.59906 5.65018 5.73287 5.79499 5.94064 6.07198 6.12881 6.18923 6.27528 6.51972 6.56882 6.79557 6.91350 7.16769 7.26391 7.53581 7.80904 7.93244 8.09105 8.30299 8.42001 8.70527 9.04652 9.59776 11.06879 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.041443 B = 0.003982 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.458554 B = 7030.183157 C = 7216.196375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.149 4.149 3 C 0.092 3.908 4 N -0.476 5.476 5 C 0.136 3.864 6 C -0.071 4.071 7 C 0.071 3.929 8 N -0.689 5.689 9 C 0.211 3.789 10 H 0.000 1.000 11 C -0.124 4.124 12 C -0.519 4.519 13 H 0.060 0.940 14 C 0.061 3.939 15 N -0.891 5.891 16 Si 0.897 3.103 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.127 4.127 21 C -0.117 4.117 22 C -0.080 4.080 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.151 0.849 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.022 0.978 30 H 0.062 0.938 31 H 0.331 0.669 32 H 0.031 0.969 33 H 0.080 0.920 34 H 0.003 0.997 35 H 0.261 0.739 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.326 -3.848 10.163 19.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.151 4.151 3 C -0.065 4.065 4 N -0.183 5.183 5 C -0.003 4.003 6 C -0.110 4.110 7 C -0.060 4.060 8 N -0.320 5.320 9 C 0.104 3.896 10 H 0.018 0.982 11 C -0.182 4.182 12 C -0.557 4.557 13 H 0.078 0.922 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.725 3.275 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.129 4.129 21 C -0.174 4.174 22 C -0.106 4.106 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.168 0.832 27 H 0.105 0.895 28 H 0.096 0.904 29 H 0.040 0.960 30 H 0.081 0.919 31 H 0.148 0.852 32 H 0.051 0.949 33 H 0.099 0.901 34 H 0.022 0.978 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.750 -3.739 10.019 19.037 hybrid contribution 0.077 0.561 -0.415 0.702 sum -15.672 -3.178 9.604 18.654 Atomic orbital electron populations 1.20674 0.90482 1.02920 1.02264 1.20869 0.97330 0.94283 1.02613 1.22606 0.89883 0.97292 0.96735 1.67540 1.08026 1.31111 1.11670 1.21255 0.96919 0.87650 0.94440 1.20617 0.87293 1.03774 0.99273 1.21772 0.90798 1.00058 0.93326 1.60740 1.04933 1.47907 1.18387 1.19094 0.94103 0.93567 0.82850 0.98221 1.21710 0.96669 0.96967 1.02848 1.21239 1.02614 1.38004 0.93855 0.92208 1.24924 0.98071 0.95543 0.95490 1.69889 1.38244 1.46348 0.98478 0.86577 0.84101 0.79881 0.76925 1.20184 1.21331 1.20312 1.20775 0.94334 0.96762 1.01006 1.20851 1.00503 0.93413 1.02620 1.21341 0.93364 0.98017 0.97857 0.91205 0.91314 0.91548 0.83186 0.89471 0.90379 0.96003 0.91929 0.85191 0.94936 0.90149 0.97814 0.92897 0.90948 0.91560 0.89761 0.85177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.04 36.01 0.36 -0.42 16 2 C -0.15 -1.64 5.90 -104.48 -0.62 -2.25 16 3 C 0.09 1.18 10.86 -17.54 -0.19 0.99 16 4 N -0.48 -7.47 10.27 -9.47 -0.10 -7.57 16 5 C 0.14 2.06 6.03 -82.59 -0.50 1.56 16 6 C -0.07 -1.12 5.08 -27.88 -0.14 -1.26 16 7 C 0.07 1.35 5.33 -3.83 -0.02 1.33 16 8 N -0.69 -15.03 6.30 -107.95 -0.68 -15.71 16 9 C 0.21 5.50 2.60 -68.87 -0.18 5.32 16 10 H 0.00 0.00 7.80 -51.93 -0.41 -0.40 16 11 C -0.12 -3.13 9.19 37.16 0.34 -2.79 16 12 C -0.52 -14.50 8.59 -34.44 -0.30 -14.79 16 13 H 0.06 1.63 7.62 -52.49 -0.40 1.24 16 14 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 15 N -0.89 -25.88 11.32 55.43 0.63 -25.25 16 16 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C -0.13 -1.65 5.90 -104.48 -0.62 -2.27 16 21 C -0.12 -1.30 9.21 36.00 0.33 -0.97 16 22 C -0.08 -0.91 9.55 -39.27 -0.37 -1.28 16 23 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 25 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 26 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 27 H 0.09 1.26 6.69 -51.93 -0.35 0.91 16 28 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.02 0.45 8.06 -51.93 -0.42 0.03 16 30 H 0.06 1.20 6.70 -51.93 -0.35 0.85 16 31 H 0.33 7.07 8.23 -39.29 -0.32 6.74 16 32 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 34 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.63 8.10 -51.92 -0.42 0.21 16 38 H 0.08 1.07 5.87 -51.93 -0.31 0.76 16 39 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 318.09 15.07 4.79 4.79 Total: -1.00 -30.50 318.09 -8.55 -39.05 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -6.18 Total: 3.38 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -1.99 Total: -15.21 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: -0.15 Total: -48.53 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.50 -8.55 -39.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594536885.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.256 kcal (2) G-P(sol) polarization free energy of solvation -30.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds