Wall clock time and date at job start Mon Mar 30 2020 05:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38224 * 120.41881 * 2 1 4 4 N 1.31866 * 120.76358 * 179.74749 * 3 2 1 5 5 C 1.31882 * 121.72117 * 0.55667 * 4 3 2 6 6 C 1.50700 * 119.61331 * 179.71218 * 5 4 3 7 7 C 1.53003 * 109.47087 * 269.73008 * 6 5 4 8 8 N 1.46895 * 109.47339 * 180.02562 * 7 6 5 9 9 C 1.46902 * 111.00561 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.46719 * 34.99912 * 9 8 7 11 11 C 1.52997 * 109.47094 * 275.00137 * 9 8 7 12 12 C 1.50697 * 109.47181 * 154.99698 * 9 8 7 13 13 H 1.07999 * 120.00055 * 0.02562 * 12 9 8 14 14 C 1.37878 * 119.99687 * 180.02562 * 12 9 8 15 15 N 1.31511 * 120.00458 * 359.97438 * 14 12 9 16 16 Si 1.86805 * 119.99926 * 180.02562 * 14 12 9 17 17 H 1.48506 * 109.46872 * 59.99743 * 16 14 12 18 18 H 1.48503 * 109.47008 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.46914 * 299.99916 * 16 14 12 20 20 C 1.38182 * 120.76827 * 359.44316 * 5 4 3 21 21 C 1.50694 * 120.41935 * 180.29637 * 20 5 4 22 22 C 1.38634 * 120.41908 * 180.02562 * 2 1 3 23 23 H 1.09003 * 109.47115 * 269.98496 * 1 2 3 24 24 H 1.09000 * 109.46707 * 29.98027 * 1 2 3 25 25 H 1.09001 * 109.46785 * 149.98274 * 1 2 3 26 26 H 1.08000 * 119.61807 * 0.03775 * 3 2 1 27 27 H 1.08994 * 109.47031 * 149.73497 * 6 5 4 28 28 H 1.08997 * 109.47194 * 29.72584 * 6 5 4 29 29 H 1.09004 * 109.47337 * 60.00218 * 7 6 5 30 30 H 1.09001 * 109.47413 * 300.00155 * 7 6 5 31 31 H 1.00902 * 110.99823 * 303.95513 * 8 7 6 32 32 H 1.09002 * 109.47153 * 299.99508 * 11 9 8 33 33 H 1.09001 * 109.46832 * 179.97438 * 11 9 8 34 34 H 1.09004 * 109.47261 * 59.99681 * 11 9 8 35 35 H 0.96999 * 120.00480 * 179.97438 * 15 14 12 36 36 H 1.08999 * 109.47393 * 89.99729 * 21 20 5 37 37 H 1.09007 * 109.47334 * 209.99935 * 21 20 5 38 38 H 1.09001 * 109.46963 * 329.99276 * 21 20 5 39 39 H 1.07992 * 120.78776 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5255 1.1999 0.0050 5 6 4.2257 0.0823 -0.0008 6 6 5.7313 0.1469 -0.0012 7 6 6.2404 0.1689 -1.4439 8 7 7.7080 0.2311 -1.4444 9 6 8.2336 0.2532 -2.8160 10 1 7.5533 0.8142 -3.4568 11 6 8.3597 -1.1798 -3.3369 12 6 9.5890 0.9118 -2.8240 13 1 10.0174 1.2770 -1.9023 14 6 10.2823 1.0480 -4.0080 15 7 9.7609 0.6028 -5.1303 16 14 11.9628 1.8638 -4.0179 17 1 12.8895 1.0986 -3.1454 18 1 12.4940 1.8861 -5.4044 19 1 11.8409 3.2543 -3.5114 20 6 3.5948 -1.1471 -0.0008 21 6 4.4027 -2.4192 -0.0006 22 6 2.2089 -1.1955 -0.0005 23 1 -0.3633 -0.0003 1.0277 24 1 -0.3633 0.8902 -0.5135 25 1 -0.3633 -0.8899 -0.5141 26 1 1.6675 2.1276 0.0006 27 1 6.1325 -0.7268 0.5123 28 1 6.0563 1.0515 0.5125 29 1 5.8391 1.0426 -1.9575 30 1 5.9153 -0.7358 -1.9578 31 1 8.0363 1.0270 -0.9182 32 1 9.0400 -1.7408 -2.6962 33 1 8.7493 -1.1634 -4.3548 34 1 7.3793 -1.6561 -3.3311 35 1 10.2484 0.6990 -5.9633 36 1 4.5974 -2.7259 1.0270 37 1 3.8462 -3.2031 -0.5145 38 1 5.3487 -2.2488 -0.5145 39 1 1.6888 -2.1419 -0.0014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594536885.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:19 Heat of formation + Delta-G solvation = -6.826971 kcal Electronic energy + Delta-G solvation = -17568.194084 eV Core-core repulsion = 14894.906697 eV Total energy + Delta-G solvation = -2673.287387 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.42528 -38.04647 -35.77092 -34.52566 -34.31561 -32.00514 -29.48382 -28.29825 -27.42933 -26.72878 -24.22692 -23.02455 -21.75013 -21.53472 -18.54166 -17.95594 -17.26797 -16.73285 -16.13481 -15.78379 -15.30958 -15.21853 -14.95698 -14.31032 -14.02577 -13.92716 -13.78981 -13.68831 -13.31127 -13.27469 -13.18457 -12.87564 -12.79179 -12.66415 -12.32903 -12.21034 -12.10699 -11.96287 -11.76526 -10.92004 -10.57820 -10.46682 -10.33053 -9.52452 -9.13058 -8.13882 -6.28843 0.13515 0.35949 1.42598 1.44988 1.52610 2.41352 2.75283 3.14262 3.30974 3.63513 3.87158 3.92218 4.01082 4.08947 4.23010 4.32059 4.43115 4.54300 4.61341 4.78204 4.80579 4.83951 4.86256 4.87955 5.01065 5.06131 5.10733 5.17443 5.20737 5.31992 5.35786 5.37354 5.46633 5.65591 5.83100 5.87375 6.20554 6.43048 6.73036 6.96902 7.09075 7.41596 8.91886 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.041443 B = 0.003982 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.458554 B = 7030.183157 C = 7216.196375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.140 4.140 3 C 0.073 3.927 4 N -0.511 5.511 5 C 0.103 3.897 6 C -0.056 4.056 7 C 0.081 3.919 8 N -0.681 5.681 9 C 0.214 3.786 10 H -0.038 1.038 11 C -0.111 4.111 12 C -0.541 4.541 13 H 0.062 0.938 14 C 0.012 3.988 15 N -0.919 5.919 16 Si 0.966 3.034 17 H -0.269 1.269 18 H -0.283 1.283 19 H -0.271 1.271 20 C -0.131 4.131 21 C -0.114 4.114 22 C -0.084 4.084 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.170 0.830 27 H 0.100 0.900 28 H 0.071 0.929 29 H -0.002 1.002 30 H 0.060 0.940 31 H 0.333 0.667 32 H 0.032 0.968 33 H 0.056 0.944 34 H 0.021 0.979 35 H 0.263 0.737 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.424 -4.594 11.205 21.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.141 4.141 3 C -0.085 4.085 4 N -0.219 5.219 5 C -0.035 4.035 6 C -0.094 4.094 7 C -0.049 4.049 8 N -0.311 5.311 9 C 0.106 3.894 10 H -0.020 1.020 11 C -0.170 4.170 12 C -0.579 4.579 13 H 0.080 0.920 14 C -0.187 4.187 15 N -0.558 5.558 16 Si 0.791 3.209 17 H -0.194 1.194 18 H -0.209 1.209 19 H -0.196 1.196 20 C -0.133 4.133 21 C -0.171 4.171 22 C -0.110 4.110 23 H 0.103 0.897 24 H 0.096 0.904 25 H 0.099 0.901 26 H 0.187 0.813 27 H 0.118 0.882 28 H 0.089 0.911 29 H 0.016 0.984 30 H 0.078 0.922 31 H 0.150 0.850 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.040 0.960 35 H 0.072 0.928 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -16.857 -4.488 11.081 20.666 hybrid contribution 0.279 0.792 -0.731 1.113 sum -16.579 -3.697 10.349 19.890 Atomic orbital electron populations 1.20760 0.87616 1.04136 1.03576 1.21293 0.99326 0.93473 1.00045 1.23047 0.89196 0.99130 0.97105 1.67436 1.09726 1.31964 1.12757 1.21149 0.96318 0.88721 0.97271 1.20399 0.88545 1.03975 0.96519 1.21701 0.88787 0.98699 0.95711 1.60679 1.06739 1.47792 1.15912 1.18932 0.93006 0.93270 0.84240 1.02032 1.21523 0.97478 0.96695 1.01275 1.21578 1.03525 1.38610 0.94225 0.92017 1.25778 1.01916 0.95997 0.95038 1.70024 1.39718 1.47073 0.99002 0.85497 0.79331 0.78985 0.77118 1.19361 1.20858 1.19642 1.21005 0.95507 0.96484 1.00346 1.20863 0.99537 0.93112 1.03603 1.21750 0.92751 0.99548 0.96945 0.89653 0.90358 0.90138 0.81309 0.88211 0.91074 0.98418 0.92188 0.84956 0.94862 0.92472 0.96037 0.92783 0.89382 0.89684 0.91700 0.82079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.19 10.04 71.24 0.72 -0.47 16 2 C -0.14 -2.75 5.90 -19.77 -0.12 -2.86 16 3 C 0.07 1.78 10.86 84.68 0.92 2.70 16 4 N -0.51 -16.16 10.27 -183.88 -1.89 -18.05 16 5 C 0.10 3.13 6.03 42.54 0.26 3.39 16 6 C -0.06 -1.79 5.08 29.85 0.15 -1.64 16 7 C 0.08 3.18 5.33 86.31 0.46 3.64 16 8 N -0.68 -30.33 6.30 -495.46 -3.12 -33.45 16 9 C 0.21 11.45 2.60 44.17 0.11 11.56 16 10 H -0.04 -2.27 7.80 -2.39 -0.02 -2.29 16 11 C -0.11 -5.73 9.19 71.98 0.66 -5.07 16 12 C -0.54 -30.67 8.59 25.60 0.22 -30.45 16 13 H 0.06 3.39 7.62 -2.91 -0.02 3.37 16 14 C 0.01 0.67 5.30 84.66 0.45 1.12 16 15 N -0.92 -54.23 11.32 21.45 0.24 -53.99 16 16 Si 0.97 44.20 29.54 68.60 2.03 46.23 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 20 C -0.13 -3.26 5.90 -19.78 -0.12 -3.37 16 21 C -0.11 -2.34 9.21 71.23 0.66 -1.68 16 22 C -0.08 -1.70 9.55 22.47 0.21 -1.48 16 23 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.08 0.77 8.09 -2.39 -0.02 0.75 16 25 H 0.08 0.73 8.10 -2.39 -0.02 0.71 16 26 H 0.17 3.23 8.06 -2.91 -0.02 3.21 16 27 H 0.10 2.87 6.69 -2.39 -0.02 2.85 16 28 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.00 -0.11 8.06 -2.39 -0.02 -0.13 16 30 H 0.06 2.36 6.70 -2.39 -0.02 2.34 16 31 H 0.33 14.54 8.23 -89.69 -0.74 13.80 16 32 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.06 3.21 6.07 -2.39 -0.01 3.19 16 34 H 0.02 0.97 7.45 -2.38 -0.02 0.96 16 35 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 36 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.08 1.40 8.10 -2.38 -0.02 1.38 16 38 H 0.06 1.59 5.87 -2.39 -0.01 1.57 16 39 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -66.55 318.09 2.14 -64.42 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.29 Total: 19.45 kcal Atomic # 6 Polarization: -29.19 SS G_CDS: 4.59 Total: -24.61 kcal Atomic # 7 Polarization: -100.72 SS G_CDS: -4.77 Total: -105.49 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -66.55 2.14 -64.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594536885.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.591 kcal (2) G-P(sol) polarization free energy of solvation -66.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds