Wall clock time and date at job start Mon Mar 30 2020 06:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46849 * 2 1 4 4 H 1.09000 * 109.47050 * 54.35328 * 3 2 1 5 5 C 1.50701 * 109.46792 * 174.34594 * 3 2 1 6 6 H 1.08008 * 119.99782 * 120.00029 * 5 3 2 7 7 C 1.37878 * 120.00147 * 300.00312 * 5 3 2 8 8 N 1.31506 * 119.99935 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99898 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47074 * 89.99919 * 9 7 5 11 11 H 1.48497 * 109.47149 * 209.99980 * 9 7 5 12 12 H 1.48498 * 109.47177 * 329.99683 * 9 7 5 13 13 N 1.46898 * 109.47377 * 294.34755 * 3 2 1 14 14 C 1.46896 * 110.99960 * 153.33799 * 13 3 2 15 15 C 1.53005 * 109.46928 * 174.65149 * 14 13 3 16 16 H 1.08997 * 109.47698 * 305.00277 * 15 14 13 17 17 C 1.53004 * 109.46636 * 65.00502 * 15 14 13 18 18 C 1.50700 * 109.47208 * 184.99699 * 15 14 13 19 19 C 1.38226 * 119.62119 * 275.01056 * 18 15 14 20 20 C 1.38623 * 119.16083 * 179.97438 * 19 18 15 21 21 C 1.38674 * 118.42115 * 359.97438 * 20 19 18 22 22 C 1.38176 * 119.16629 * 0.02562 * 21 20 19 23 23 N 1.31853 * 119.61482 * 94.72776 * 18 15 14 24 24 H 1.09000 * 109.47084 * 59.12455 * 1 2 3 25 25 H 1.09006 * 109.47061 * 179.12147 * 1 2 3 26 26 H 1.09000 * 109.47109 * 299.12529 * 1 2 3 27 27 H 1.08996 * 109.46782 * 240.00108 * 2 1 3 28 28 H 1.08997 * 109.46863 * 120.00180 * 2 1 3 29 29 H 0.97001 * 120.00225 * 180.02562 * 8 7 5 30 30 H 1.00901 * 110.99626 * 29.38164 * 13 3 2 31 31 H 1.08996 * 109.47404 * 294.65304 * 14 13 3 32 32 H 1.09007 * 109.47159 * 54.65828 * 14 13 3 33 33 H 1.09000 * 109.47127 * 179.97438 * 17 15 14 34 34 H 1.09002 * 109.46922 * 299.99334 * 17 15 14 35 35 H 1.08997 * 109.47261 * 59.99507 * 17 15 14 36 36 H 1.08003 * 120.42142 * 359.97438 * 19 18 15 37 37 H 1.08001 * 120.79326 * 180.02562 * 20 19 18 38 38 H 1.08005 * 120.41861 * 180.02562 * 21 20 19 39 39 H 1.07997 * 119.62328 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5404 1.4448 0.1400 6 1 4.1541 1.8865 -0.6313 7 6 4.1299 0.8830 1.2526 8 7 3.3827 0.3457 2.1920 9 14 5.9898 0.8865 1.4264 10 1 6.4189 2.1221 2.1296 11 1 6.4161 -0.3015 2.2086 12 1 6.6130 0.8418 0.0793 13 7 1.6648 2.0945 -1.2618 14 6 1.5457 3.5483 -1.0880 15 6 1.2862 4.2046 -2.4456 16 1 2.0692 3.9133 -3.1457 17 6 -0.0725 3.7483 -2.9811 18 6 1.2861 5.7033 -2.2872 19 6 0.1274 6.3491 -1.8986 20 6 0.1382 7.7279 -1.7554 21 6 1.3194 8.4086 -2.0089 22 6 2.4385 7.6952 -2.3937 23 7 2.3928 6.3827 -2.5155 24 1 -0.3633 0.5274 -0.8820 25 1 -0.3633 -1.0276 -0.0158 26 1 -0.3633 0.5002 0.8977 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.7974 -0.0492 2.9749 30 1 0.8112 1.7033 -1.6311 31 1 0.7173 3.7671 -0.4144 32 1 2.4709 3.9408 -0.6657 33 1 -0.2576 4.2162 -3.9480 34 1 -0.0724 2.6644 -3.0957 35 1 -0.8554 4.0397 -2.2810 36 1 -0.7749 5.7867 -1.7090 37 1 -0.7520 8.2593 -1.4527 38 1 1.3642 9.4829 -1.9069 39 1 3.3624 8.2178 -2.5926 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692706542.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:26 Heat of formation + Delta-G solvation = 21.480063 kcal Electronic energy + Delta-G solvation = -17979.690194 eV Core-core repulsion = 15307.630292 eV Total energy + Delta-G solvation = -2672.059902 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.21321 -36.87899 -34.67098 -32.40754 -32.00071 -30.82326 -29.22429 -26.63440 -25.33009 -23.42372 -23.24174 -22.26711 -19.92672 -19.49603 -16.83473 -16.36373 -16.11253 -15.31806 -15.03409 -14.71430 -14.02596 -13.91092 -13.56481 -13.08945 -12.93684 -12.86808 -12.45195 -12.15090 -11.98519 -11.59028 -11.25953 -11.00608 -10.86492 -10.71352 -10.58629 -10.46651 -9.89725 -9.84900 -9.64976 -9.59969 -9.25770 -9.01693 -8.81668 -8.29236 -7.17522 -5.91387 -3.94738 1.17960 1.34503 3.37024 3.43048 3.48975 3.87461 4.34286 4.50845 4.78011 4.85499 5.08865 5.19080 5.29501 5.38168 5.45064 5.47916 5.56806 5.71956 5.94219 6.06395 6.07311 6.15741 6.18121 6.19188 6.21570 6.36291 6.43300 6.65461 6.71640 6.79464 6.86436 7.11348 7.22539 7.53275 7.82668 7.98342 8.14553 8.35035 8.45063 8.81830 9.13808 9.70075 11.14127 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.021053 B = 0.005847 C = 0.004901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.666632 B = 4787.722494 C = 5712.196951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.219 3.781 4 H 0.001 0.999 5 C -0.490 4.490 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.894 3.106 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.684 5.684 14 C 0.084 3.916 15 C -0.045 4.045 16 H 0.098 0.902 17 C -0.145 4.145 18 C 0.150 3.850 19 C -0.172 4.172 20 C -0.077 4.077 21 C -0.188 4.188 22 C 0.100 3.900 23 N -0.479 5.479 24 H 0.035 0.965 25 H 0.037 0.963 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.100 0.900 29 H 0.258 0.742 30 H 0.316 0.684 31 H 0.014 0.986 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.135 0.865 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.313 11.559 -7.731 16.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.111 3.889 4 H 0.018 0.982 5 C -0.529 4.529 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.722 3.278 10 H -0.210 1.210 11 H -0.214 1.214 12 H -0.198 1.198 13 N -0.316 5.316 14 C -0.047 4.047 15 C -0.065 4.065 16 H 0.116 0.884 17 C -0.203 4.203 18 C 0.012 3.988 19 C -0.192 4.192 20 C -0.103 4.103 21 C -0.208 4.208 22 C -0.057 4.057 23 N -0.188 5.188 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.118 0.882 29 H 0.068 0.932 30 H 0.134 0.866 31 H 0.032 0.968 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.153 0.847 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.879 11.040 -8.028 15.286 hybrid contribution -0.612 0.662 1.056 1.388 sum -7.491 11.702 -6.972 15.546 Atomic orbital electron populations 1.21885 0.99667 0.99528 0.99647 1.21774 0.91174 1.00389 1.03120 1.19137 0.95518 0.89928 0.84269 0.98150 1.21241 0.91308 1.36128 1.04197 0.91978 1.24953 0.98063 0.95710 0.95885 1.69870 1.34631 1.39803 1.09567 0.86557 0.85902 0.77249 0.78065 1.20954 1.21415 1.19843 1.60682 1.36967 1.01486 1.32489 1.21731 1.00207 0.90310 0.92443 1.20197 0.99107 0.87124 1.00043 0.88398 1.21905 0.95944 1.02137 1.00308 1.21403 0.88247 0.96726 0.92397 1.22042 1.00156 0.95033 1.01952 1.21550 0.98123 0.94362 0.96262 1.22074 0.94474 1.01209 1.03043 1.22765 0.98067 0.89961 0.94915 1.67569 1.28203 1.08630 1.14371 0.94652 0.94400 0.93915 0.94009 0.88216 0.93172 0.86575 0.96835 0.90618 0.92910 0.91237 0.92794 0.84740 0.85196 0.85208 0.83007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.77 37.16 0.36 -2.53 16 2 C -0.13 -2.98 5.35 -26.73 -0.14 -3.13 16 3 C 0.22 5.51 2.02 -68.87 -0.14 5.38 16 4 H 0.00 0.02 7.83 -51.93 -0.41 -0.38 16 5 C -0.49 -13.82 8.62 -34.44 -0.30 -14.12 16 6 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 7 C 0.05 1.52 5.29 -17.82 -0.09 1.43 16 8 N -0.90 -25.93 11.29 55.43 0.63 -25.30 16 9 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 13 N -0.68 -14.59 6.25 -107.95 -0.67 -15.26 16 14 C 0.08 1.63 4.88 -3.82 -0.02 1.61 16 15 C -0.05 -0.72 2.91 -91.77 -0.27 -0.99 16 16 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 17 C -0.15 -1.87 8.38 37.16 0.31 -1.56 16 18 C 0.15 2.31 5.79 -82.59 -0.48 1.84 16 19 C -0.17 -2.21 9.18 -39.44 -0.36 -2.57 16 20 C -0.08 -0.84 10.18 -39.28 -0.40 -1.24 16 21 C -0.19 -2.03 10.11 -39.44 -0.40 -2.43 16 22 C 0.10 1.28 11.18 -17.55 -0.20 1.09 16 23 N -0.48 -7.74 10.27 -9.47 -0.10 -7.84 16 24 H 0.03 0.60 6.44 -51.93 -0.33 0.27 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.10 2.66 5.94 -51.93 -0.31 2.35 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.32 6.01 4.94 -39.29 -0.19 5.82 16 31 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 1.71 7.98 -51.93 -0.41 1.29 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.90 6.80 -51.93 -0.35 0.55 16 35 H 0.05 0.63 6.49 -51.93 -0.34 0.29 16 36 H 0.13 1.49 6.31 -52.48 -0.33 1.16 16 37 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 38 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 39 H 0.15 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 314.22 15.07 4.74 4.74 Total: -1.00 -30.42 314.22 -8.58 -39.01 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -6.03 Total: 4.87 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -2.12 Total: -17.22 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: -0.15 Total: -48.40 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.42 -8.58 -39.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692706542.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.486 kcal (2) G-P(sol) polarization free energy of solvation -30.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds