Wall clock time and date at job start Mon Mar 30 2020 06:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46849 * 2 1 4 4 H 1.09000 * 109.47050 * 54.35328 * 3 2 1 5 5 C 1.50701 * 109.46792 * 174.34594 * 3 2 1 6 6 H 1.08008 * 119.99782 * 120.00029 * 5 3 2 7 7 C 1.37878 * 120.00147 * 300.00312 * 5 3 2 8 8 N 1.31506 * 119.99935 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99898 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47074 * 89.99919 * 9 7 5 11 11 H 1.48497 * 109.47149 * 209.99980 * 9 7 5 12 12 H 1.48498 * 109.47177 * 329.99683 * 9 7 5 13 13 N 1.46898 * 109.47377 * 294.34755 * 3 2 1 14 14 C 1.46896 * 110.99960 * 153.33799 * 13 3 2 15 15 C 1.53005 * 109.46928 * 174.65149 * 14 13 3 16 16 H 1.08997 * 109.47698 * 305.00277 * 15 14 13 17 17 C 1.53004 * 109.46636 * 65.00502 * 15 14 13 18 18 C 1.50700 * 109.47208 * 184.99699 * 15 14 13 19 19 C 1.38226 * 119.62119 * 275.01056 * 18 15 14 20 20 C 1.38623 * 119.16083 * 179.97438 * 19 18 15 21 21 C 1.38674 * 118.42115 * 359.97438 * 20 19 18 22 22 C 1.38176 * 119.16629 * 0.02562 * 21 20 19 23 23 N 1.31853 * 119.61482 * 94.72776 * 18 15 14 24 24 H 1.09000 * 109.47084 * 59.12455 * 1 2 3 25 25 H 1.09006 * 109.47061 * 179.12147 * 1 2 3 26 26 H 1.09000 * 109.47109 * 299.12529 * 1 2 3 27 27 H 1.08996 * 109.46782 * 240.00108 * 2 1 3 28 28 H 1.08997 * 109.46863 * 120.00180 * 2 1 3 29 29 H 0.97001 * 120.00225 * 180.02562 * 8 7 5 30 30 H 1.00901 * 110.99626 * 29.38164 * 13 3 2 31 31 H 1.08996 * 109.47404 * 294.65304 * 14 13 3 32 32 H 1.09007 * 109.47159 * 54.65828 * 14 13 3 33 33 H 1.09000 * 109.47127 * 179.97438 * 17 15 14 34 34 H 1.09002 * 109.46922 * 299.99334 * 17 15 14 35 35 H 1.08997 * 109.47261 * 59.99507 * 17 15 14 36 36 H 1.08003 * 120.42142 * 359.97438 * 19 18 15 37 37 H 1.08001 * 120.79326 * 180.02562 * 20 19 18 38 38 H 1.08005 * 120.41861 * 180.02562 * 21 20 19 39 39 H 1.07997 * 119.62328 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5404 1.4448 0.1400 6 1 4.1541 1.8865 -0.6313 7 6 4.1299 0.8830 1.2526 8 7 3.3827 0.3457 2.1920 9 14 5.9898 0.8865 1.4264 10 1 6.4189 2.1221 2.1296 11 1 6.4161 -0.3015 2.2086 12 1 6.6130 0.8418 0.0793 13 7 1.6648 2.0945 -1.2618 14 6 1.5457 3.5483 -1.0880 15 6 1.2862 4.2046 -2.4456 16 1 2.0692 3.9133 -3.1457 17 6 -0.0725 3.7483 -2.9811 18 6 1.2861 5.7033 -2.2872 19 6 0.1274 6.3491 -1.8986 20 6 0.1382 7.7279 -1.7554 21 6 1.3194 8.4086 -2.0089 22 6 2.4385 7.6952 -2.3937 23 7 2.3928 6.3827 -2.5155 24 1 -0.3633 0.5274 -0.8820 25 1 -0.3633 -1.0276 -0.0158 26 1 -0.3633 0.5002 0.8977 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.7974 -0.0492 2.9749 30 1 0.8112 1.7033 -1.6311 31 1 0.7173 3.7671 -0.4144 32 1 2.4709 3.9408 -0.6657 33 1 -0.2576 4.2162 -3.9480 34 1 -0.0724 2.6644 -3.0957 35 1 -0.8554 4.0397 -2.2810 36 1 -0.7749 5.7867 -1.7090 37 1 -0.7520 8.2593 -1.4527 38 1 1.3642 9.4829 -1.9069 39 1 3.3624 8.2178 -2.5926 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692706542.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:26 Heat of formation + Delta-G solvation = 2.239675 kcal Electronic energy + Delta-G solvation = -17980.524520 eV Core-core repulsion = 15307.630292 eV Total energy + Delta-G solvation = -2672.894227 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.22187 -38.54397 -36.19352 -34.00557 -33.35509 -32.36552 -30.39901 -28.51254 -26.75931 -24.91669 -24.30000 -23.77695 -21.50155 -21.10073 -18.41736 -17.73955 -17.33371 -16.83472 -16.53905 -16.19771 -15.72048 -15.11051 -14.81292 -14.68618 -14.37665 -13.97661 -13.87450 -13.64566 -13.41095 -13.11469 -12.83991 -12.75133 -12.55482 -12.23940 -12.07376 -11.98200 -11.89578 -11.51947 -11.38199 -11.03647 -10.76860 -10.43857 -10.27476 -9.84197 -9.00960 -8.07987 -6.19468 0.21452 0.42705 1.38572 1.39228 1.50870 2.42729 2.87110 3.16406 3.29187 3.75394 3.88674 4.05418 4.16226 4.23681 4.28577 4.31243 4.41876 4.51947 4.58382 4.68492 4.70814 4.78483 4.89647 5.01117 5.04521 5.10680 5.16865 5.22775 5.27370 5.34804 5.37578 5.45740 5.60699 5.74491 5.85819 5.90991 6.35650 6.49874 6.93712 7.03564 7.15415 7.49325 8.95105 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.021053 B = 0.005847 C = 0.004901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.666632 B = 4787.722494 C = 5712.196951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 C 0.225 3.775 4 H -0.033 1.033 5 C -0.512 4.512 6 H 0.043 0.957 7 C 0.011 3.989 8 N -0.918 5.918 9 Si 0.952 3.048 10 H -0.280 1.280 11 H -0.278 1.278 12 H -0.273 1.273 13 N -0.684 5.684 14 C 0.093 3.907 15 C -0.035 4.035 16 H 0.072 0.928 17 C -0.138 4.138 18 C 0.120 3.880 19 C -0.176 4.176 20 C -0.076 4.076 21 C -0.176 4.176 22 C 0.080 3.920 23 N -0.524 5.524 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.036 0.964 27 H 0.038 0.962 28 H 0.068 0.932 29 H 0.261 0.739 30 H 0.332 0.668 31 H 0.019 0.981 32 H 0.032 0.968 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.152 0.848 37 H 0.167 0.833 38 H 0.167 0.833 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.809 12.926 -8.292 18.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C 0.116 3.884 4 H -0.015 1.015 5 C -0.551 4.551 6 H 0.062 0.938 7 C -0.187 4.187 8 N -0.559 5.559 9 Si 0.778 3.222 10 H -0.206 1.206 11 H -0.203 1.203 12 H -0.198 1.198 13 N -0.318 5.318 14 C -0.037 4.037 15 C -0.054 4.054 16 H 0.091 0.909 17 C -0.195 4.195 18 C -0.018 4.018 19 C -0.195 4.195 20 C -0.101 4.101 21 C -0.196 4.196 22 C -0.077 4.077 23 N -0.233 5.233 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.152 0.848 31 H 0.037 0.963 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.169 0.831 37 H 0.185 0.815 38 H 0.184 0.816 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -8.391 12.406 -8.604 17.273 hybrid contribution -0.133 0.345 1.231 1.285 sum -8.524 12.751 -7.373 17.018 Atomic orbital electron populations 1.21755 0.95991 1.01387 1.00506 1.21592 0.94479 0.98612 1.01308 1.18915 0.93877 0.90894 0.84672 1.01539 1.21477 0.93059 1.36451 1.04140 0.93825 1.25645 1.02194 0.95337 0.95573 1.69986 1.36122 1.39981 1.09796 0.85642 0.80989 0.77531 0.77988 1.20615 1.20309 1.19784 1.60534 1.38156 1.02585 1.30492 1.21593 0.98164 0.89119 0.94832 1.19994 1.00265 0.88192 0.96986 0.90929 1.21859 0.94231 1.02020 1.01418 1.21322 0.89417 0.96169 0.94869 1.22249 0.99658 0.96277 1.01339 1.22030 0.99516 0.93689 0.94914 1.22493 0.93479 1.02961 1.00660 1.23222 0.99964 0.89181 0.95287 1.67464 1.29308 1.10580 1.15967 0.92242 0.92106 0.94488 0.94353 0.91378 0.93007 0.84755 0.96322 0.94890 0.91251 0.91419 0.91101 0.83080 0.81527 0.81555 0.81171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.17 9.77 71.98 0.70 -4.47 16 2 C -0.12 -5.81 5.35 30.59 0.16 -5.64 16 3 C 0.22 11.70 2.02 44.17 0.09 11.79 16 4 H -0.03 -1.91 7.83 -2.39 -0.02 -1.92 16 5 C -0.51 -30.02 8.62 25.60 0.22 -29.80 16 6 H 0.04 2.65 7.81 -2.91 -0.02 2.63 16 7 C 0.01 0.61 5.29 84.66 0.45 1.06 16 8 N -0.92 -54.17 11.29 21.45 0.24 -53.92 16 9 Si 0.95 46.06 29.54 68.60 2.03 48.09 16 10 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 12 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 13 N -0.68 -29.84 6.25 -495.45 -3.10 -32.94 16 14 C 0.09 3.76 4.88 86.31 0.42 4.18 16 15 C -0.03 -1.13 2.91 -11.54 -0.03 -1.16 16 16 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 17 C -0.14 -3.33 8.38 71.98 0.60 -2.73 16 18 C 0.12 3.68 5.79 42.55 0.25 3.92 16 19 C -0.18 -4.16 9.18 22.36 0.21 -3.96 16 20 C -0.08 -1.41 10.18 22.47 0.23 -1.18 16 21 C -0.18 -3.28 10.11 22.36 0.23 -3.06 16 22 C 0.08 1.98 11.18 84.67 0.95 2.93 16 23 N -0.52 -17.20 10.27 -183.89 -1.89 -19.09 16 24 H 0.06 1.91 6.44 -2.39 -0.02 1.89 16 25 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 26 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.04 1.81 8.14 -2.39 -0.02 1.80 16 28 H 0.07 3.71 5.94 -2.39 -0.01 3.70 16 29 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 30 H 0.33 12.46 4.94 -89.69 -0.44 12.02 16 31 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.03 1.58 7.98 -2.38 -0.02 1.56 16 33 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.07 1.64 6.80 -2.39 -0.02 1.63 16 35 H 0.07 1.47 6.49 -2.39 -0.02 1.46 16 36 H 0.15 2.94 6.31 -2.91 -0.02 2.92 16 37 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 38 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 39 H 0.17 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -69.01 314.22 2.33 -66.67 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.58 Total: 19.31 kcal Atomic # 6 Polarization: -32.59 SS G_CDS: 4.47 Total: -28.12 kcal Atomic # 7 Polarization: -101.21 SS G_CDS: -4.74 Total: -105.95 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -69.01 2.33 -66.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692706542.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.913 kcal (2) G-P(sol) polarization free energy of solvation -69.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds