Wall clock time and date at job start Mon Mar 30 2020 06:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47264 * 2 1 4 4 H 1.08997 * 109.47066 * 54.85684 * 3 2 1 5 5 C 1.50698 * 109.47346 * 174.85957 * 3 2 1 6 6 H 1.08001 * 120.00162 * 119.99840 * 5 3 2 7 7 C 1.37879 * 119.99677 * 299.99580 * 5 3 2 8 8 N 1.31510 * 120.00015 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99681 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47001 * 90.00171 * 9 7 5 11 11 H 1.48504 * 109.47044 * 210.00248 * 9 7 5 12 12 H 1.48499 * 109.47255 * 330.00393 * 9 7 5 13 13 N 1.46908 * 109.46782 * 294.85833 * 3 2 1 14 14 C 1.46904 * 110.99572 * 154.14235 * 13 3 2 15 15 C 1.53001 * 109.46439 * 185.45419 * 14 13 3 16 16 H 1.09000 * 109.47347 * 55.00317 * 15 14 13 17 17 C 1.53002 * 109.47479 * 294.99785 * 15 14 13 18 18 C 1.50700 * 109.46821 * 174.99978 * 15 14 13 19 19 C 1.38229 * 119.61666 * 84.72912 * 18 15 14 20 20 C 1.38628 * 119.15992 * 179.75515 * 19 18 15 21 21 C 1.38678 * 118.42014 * 0.50592 * 20 19 18 22 22 C 1.38180 * 119.16384 * 359.73307 * 21 20 19 23 23 N 1.31853 * 119.62088 * 264.99952 * 18 15 14 24 24 H 1.09004 * 109.46850 * 55.39709 * 1 2 3 25 25 H 1.09001 * 109.47190 * 175.39837 * 1 2 3 26 26 H 1.09000 * 109.47158 * 295.40323 * 1 2 3 27 27 H 1.09001 * 109.47548 * 239.99753 * 2 1 3 28 28 H 1.09002 * 109.46865 * 119.99482 * 2 1 3 29 29 H 0.97000 * 119.99591 * 179.97438 * 8 7 5 30 30 H 1.00899 * 111.00018 * 278.09827 * 13 3 2 31 31 H 1.08993 * 109.47382 * 305.44960 * 14 13 3 32 32 H 1.08999 * 109.47055 * 65.46052 * 14 13 3 33 33 H 1.08998 * 109.46522 * 59.99952 * 17 15 14 34 34 H 1.08998 * 109.46941 * 179.97438 * 17 15 14 35 35 H 1.08998 * 109.46801 * 300.00356 * 17 15 14 36 36 H 1.07995 * 120.42185 * 359.97438 * 19 18 15 37 37 H 1.08003 * 120.79192 * 180.21754 * 20 19 18 38 38 H 1.07997 * 120.42050 * 179.71083 * 21 20 19 39 39 H 1.08002 * 119.61786 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6035 1.9822 0.8403 5 6 3.5417 1.4444 0.1273 6 1 4.1488 1.8883 -0.6478 7 6 4.1404 0.8795 1.2334 8 7 3.4011 0.3385 2.1770 9 14 6.0018 0.8812 1.3908 10 1 6.4380 2.1147 2.0933 11 1 6.4341 -0.3092 2.1663 12 1 6.6131 0.8396 0.0381 13 7 1.6543 2.0982 -1.2568 14 6 1.5553 3.5535 -1.0824 15 6 1.0220 4.1861 -2.3693 16 1 0.0770 3.7156 -2.6410 17 6 2.0361 3.9815 -3.4966 18 6 0.8042 5.6612 -2.1511 19 6 1.8617 6.5380 -2.3053 20 6 1.6496 7.8936 -2.1073 21 6 0.3785 8.3174 -1.7496 22 6 -0.6285 7.3817 -1.6089 23 7 -0.3914 6.1000 -1.8101 24 1 -0.3633 0.5836 -0.8459 25 1 -0.3634 -1.0244 -0.0824 26 1 -0.3633 0.4409 0.9283 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.8225 -0.0592 2.9549 30 1 2.2979 1.8658 -1.9983 31 1 0.8757 3.7755 -0.2597 32 1 2.5415 3.9605 -0.8591 33 1 2.1936 2.9146 -3.6543 34 1 1.6559 4.4318 -4.4135 35 1 2.9811 4.4520 -3.2249 36 1 2.8399 6.1720 -2.5801 37 1 2.4561 8.6023 -2.2242 38 1 0.1783 9.3654 -1.5827 39 1 -1.6210 7.7036 -1.3301 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692706545.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:31 Heat of formation + Delta-G solvation = 17.167621 kcal Electronic energy + Delta-G solvation = -17973.992938 eV Core-core repulsion = 15301.746035 eV Total energy + Delta-G solvation = -2672.246903 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.21134 -36.76629 -34.61095 -32.40726 -31.97778 -30.82888 -29.21751 -26.63792 -25.14823 -23.40700 -23.21458 -22.19088 -19.89694 -19.43369 -16.81611 -16.71012 -16.23707 -15.30210 -14.78075 -14.69427 -14.00811 -13.83449 -13.43239 -13.05551 -12.92803 -12.82668 -12.48194 -11.97303 -11.84110 -11.33556 -11.23866 -11.05147 -10.90492 -10.71475 -10.64355 -10.48452 -10.07135 -9.82380 -9.55417 -9.50340 -9.26099 -9.04875 -8.79909 -8.35972 -7.22345 -5.98066 -4.11153 1.17972 1.34231 3.26518 3.34005 3.36203 3.86917 4.33881 4.40161 4.79835 4.85139 5.09777 5.20110 5.25870 5.35107 5.47243 5.50624 5.63190 5.74817 5.98240 6.08336 6.12733 6.21216 6.30769 6.40348 6.43699 6.58038 6.62090 6.73388 6.77670 6.80778 7.18387 7.24028 7.48017 7.62812 7.80137 8.12062 8.12724 8.17302 8.35903 8.69663 9.02072 9.56249 11.02003 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.022310 B = 0.005579 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.765913 B = 5017.850651 C = 5624.151318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C 0.215 3.785 4 H 0.031 0.969 5 C -0.544 4.544 6 H 0.053 0.947 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.888 3.112 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.687 5.687 14 C 0.083 3.917 15 C -0.044 4.044 16 H 0.094 0.906 17 C -0.145 4.145 18 C 0.150 3.850 19 C -0.170 4.170 20 C -0.077 4.077 21 C -0.188 4.188 22 C 0.098 3.902 23 N -0.482 5.482 24 H 0.051 0.949 25 H 0.024 0.976 26 H 0.035 0.965 27 H 0.030 0.970 28 H 0.089 0.911 29 H 0.261 0.739 30 H 0.327 0.673 31 H 0.061 0.939 32 H 0.027 0.973 33 H 0.070 0.930 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.136 0.864 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.946 12.069 -8.619 15.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.144 4.144 3 C 0.107 3.893 4 H 0.049 0.951 5 C -0.583 4.583 6 H 0.071 0.929 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.317 5.317 14 C -0.048 4.048 15 C -0.064 4.064 16 H 0.113 0.887 17 C -0.203 4.203 18 C 0.012 3.988 19 C -0.189 4.189 20 C -0.103 4.103 21 C -0.208 4.208 22 C -0.059 4.059 23 N -0.191 5.191 24 H 0.070 0.930 25 H 0.043 0.957 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.108 0.892 29 H 0.071 0.929 30 H 0.144 0.856 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.154 0.846 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -5.299 11.259 -8.229 14.919 hybrid contribution 2.752 1.015 0.271 2.946 sum -2.547 12.274 -7.959 14.849 Atomic orbital electron populations 1.21718 0.98992 0.98450 1.00463 1.21486 0.92136 0.99170 1.01584 1.19135 0.92775 0.91280 0.86106 0.95112 1.21861 0.92772 1.38213 1.05501 0.92899 1.24932 0.97837 0.95024 0.95741 1.69881 1.34766 1.38244 1.09388 0.86673 0.86169 0.77519 0.78078 1.20831 1.21140 1.19996 1.60877 1.54907 1.05697 1.10191 1.21674 0.98583 0.90216 0.94347 1.20193 1.00947 0.88143 0.97083 0.88738 1.21894 0.98433 1.02778 0.97157 1.21417 0.88243 0.96819 0.92355 1.22075 1.00864 0.93753 1.02243 1.21568 0.97054 0.95883 0.95760 1.22070 0.94432 1.01062 1.03234 1.22740 0.99282 0.88399 0.95464 1.67548 1.23205 1.16798 1.11516 0.93029 0.95692 0.94595 0.95137 0.89232 0.92896 0.85609 0.92003 0.95449 0.91064 0.93105 0.92616 0.84599 0.85169 0.85228 0.83060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.85 37.16 0.37 -2.57 16 2 C -0.11 -2.55 5.45 -26.73 -0.15 -2.69 16 3 C 0.21 5.35 1.97 -68.86 -0.14 5.21 16 4 H 0.03 0.86 7.70 -51.93 -0.40 0.46 16 5 C -0.54 -14.62 8.47 -34.44 -0.29 -14.91 16 6 H 0.05 1.40 7.73 -52.49 -0.41 1.00 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -25.13 11.29 55.43 0.63 -24.50 16 9 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 13 N -0.69 -14.33 5.58 -107.95 -0.60 -14.94 16 14 C 0.08 1.58 4.95 -3.82 -0.02 1.56 16 15 C -0.04 -0.69 2.91 -91.77 -0.27 -0.96 16 16 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 17 C -0.14 -1.94 8.39 37.16 0.31 -1.63 16 18 C 0.15 2.28 5.79 -82.59 -0.48 1.80 16 19 C -0.17 -2.23 9.18 -39.44 -0.36 -2.59 16 20 C -0.08 -0.85 10.18 -39.27 -0.40 -1.25 16 21 C -0.19 -2.01 10.11 -39.44 -0.40 -2.41 16 22 C 0.10 1.22 11.18 -17.55 -0.20 1.02 16 23 N -0.48 -7.51 10.27 -9.47 -0.10 -7.61 16 24 H 0.05 1.05 7.63 -51.93 -0.40 0.66 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.09 2.42 5.95 -51.93 -0.31 2.11 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.33 6.60 6.85 -39.29 -0.27 6.33 16 31 H 0.06 1.29 7.92 -51.93 -0.41 0.88 16 32 H 0.03 0.55 8.12 -51.93 -0.42 0.13 16 33 H 0.07 0.97 6.81 -51.93 -0.35 0.62 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.71 6.49 -51.93 -0.34 0.37 16 36 H 0.14 1.61 6.32 -52.49 -0.33 1.28 16 37 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 38 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 316.44 15.07 4.77 4.77 Total: -1.00 -29.14 316.44 -8.59 -37.73 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -6.15 Total: 6.15 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -2.11 Total: -17.67 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: -0.07 Total: -47.04 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.14 -8.59 -37.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692706545.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.897 kcal (2) G-P(sol) polarization free energy of solvation -29.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds