Wall clock time and date at job start Mon Mar 30 2020 06:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47264 * 2 1 4 4 H 1.08997 * 109.47066 * 54.85684 * 3 2 1 5 5 C 1.50698 * 109.47346 * 174.85957 * 3 2 1 6 6 H 1.08001 * 120.00162 * 119.99840 * 5 3 2 7 7 C 1.37879 * 119.99677 * 299.99580 * 5 3 2 8 8 N 1.31510 * 120.00015 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99681 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47001 * 90.00171 * 9 7 5 11 11 H 1.48504 * 109.47044 * 210.00248 * 9 7 5 12 12 H 1.48499 * 109.47255 * 330.00393 * 9 7 5 13 13 N 1.46908 * 109.46782 * 294.85833 * 3 2 1 14 14 C 1.46904 * 110.99572 * 154.14235 * 13 3 2 15 15 C 1.53001 * 109.46439 * 185.45419 * 14 13 3 16 16 H 1.09000 * 109.47347 * 55.00317 * 15 14 13 17 17 C 1.53002 * 109.47479 * 294.99785 * 15 14 13 18 18 C 1.50700 * 109.46821 * 174.99978 * 15 14 13 19 19 C 1.38229 * 119.61666 * 84.72912 * 18 15 14 20 20 C 1.38628 * 119.15992 * 179.75515 * 19 18 15 21 21 C 1.38678 * 118.42014 * 0.50592 * 20 19 18 22 22 C 1.38180 * 119.16384 * 359.73307 * 21 20 19 23 23 N 1.31853 * 119.62088 * 264.99952 * 18 15 14 24 24 H 1.09004 * 109.46850 * 55.39709 * 1 2 3 25 25 H 1.09001 * 109.47190 * 175.39837 * 1 2 3 26 26 H 1.09000 * 109.47158 * 295.40323 * 1 2 3 27 27 H 1.09001 * 109.47548 * 239.99753 * 2 1 3 28 28 H 1.09002 * 109.46865 * 119.99482 * 2 1 3 29 29 H 0.97000 * 119.99591 * 179.97438 * 8 7 5 30 30 H 1.00899 * 111.00018 * 278.09827 * 13 3 2 31 31 H 1.08993 * 109.47382 * 305.44960 * 14 13 3 32 32 H 1.08999 * 109.47055 * 65.46052 * 14 13 3 33 33 H 1.08998 * 109.46522 * 59.99952 * 17 15 14 34 34 H 1.08998 * 109.46941 * 179.97438 * 17 15 14 35 35 H 1.08998 * 109.46801 * 300.00356 * 17 15 14 36 36 H 1.07995 * 120.42185 * 359.97438 * 19 18 15 37 37 H 1.08003 * 120.79192 * 180.21754 * 20 19 18 38 38 H 1.07997 * 120.42050 * 179.71083 * 21 20 19 39 39 H 1.08002 * 119.61786 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6035 1.9822 0.8403 5 6 3.5417 1.4444 0.1273 6 1 4.1488 1.8883 -0.6478 7 6 4.1404 0.8795 1.2334 8 7 3.4011 0.3385 2.1770 9 14 6.0018 0.8812 1.3908 10 1 6.4380 2.1147 2.0933 11 1 6.4341 -0.3092 2.1663 12 1 6.6131 0.8396 0.0381 13 7 1.6543 2.0982 -1.2568 14 6 1.5553 3.5535 -1.0824 15 6 1.0220 4.1861 -2.3693 16 1 0.0770 3.7156 -2.6410 17 6 2.0361 3.9815 -3.4966 18 6 0.8042 5.6612 -2.1511 19 6 1.8617 6.5380 -2.3053 20 6 1.6496 7.8936 -2.1073 21 6 0.3785 8.3174 -1.7496 22 6 -0.6285 7.3817 -1.6089 23 7 -0.3914 6.1000 -1.8101 24 1 -0.3633 0.5836 -0.8459 25 1 -0.3634 -1.0244 -0.0824 26 1 -0.3633 0.4409 0.9283 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.8225 -0.0592 2.9549 30 1 2.2979 1.8658 -1.9983 31 1 0.8757 3.7755 -0.2597 32 1 2.5415 3.9605 -0.8591 33 1 2.1936 2.9146 -3.6543 34 1 1.6559 4.4318 -4.4135 35 1 2.9811 4.4520 -3.2249 36 1 2.8399 6.1720 -2.5801 37 1 2.4561 8.6023 -2.2242 38 1 0.1783 9.3654 -1.5827 39 1 -1.6210 7.7036 -1.3301 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692706545.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:30 Heat of formation + Delta-G solvation = -0.247532 kcal Electronic energy + Delta-G solvation = -17974.748115 eV Core-core repulsion = 15301.746035 eV Total energy + Delta-G solvation = -2673.002081 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.21275 -38.41927 -36.16472 -33.90123 -33.35269 -32.45502 -30.40779 -28.44637 -26.61646 -24.88859 -24.28742 -23.72371 -21.45328 -21.07521 -18.75600 -17.76606 -17.30494 -16.81302 -16.25875 -16.16417 -15.56052 -15.13718 -14.75520 -14.62949 -14.35623 -14.08506 -13.78342 -13.52122 -13.25439 -13.09064 -12.93724 -12.77149 -12.55613 -12.22195 -12.10937 -11.95857 -11.84191 -11.49982 -11.33638 -11.01917 -10.76306 -10.46266 -10.28827 -9.83393 -9.05759 -8.04983 -6.27762 0.21776 0.42022 1.38304 1.39889 1.49370 2.40219 2.87386 3.14634 3.29871 3.77800 3.89934 4.06045 4.17717 4.26071 4.30905 4.31466 4.43786 4.60334 4.76119 4.77913 4.79743 4.88751 4.93364 5.02699 5.04844 5.16483 5.17843 5.27132 5.36576 5.42270 5.44752 5.53187 5.63964 5.78047 5.85768 6.10762 6.20284 6.37402 6.82088 7.03365 7.13898 7.43849 8.91969 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.022310 B = 0.005579 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.765913 B = 5017.850651 C = 5624.151318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.101 4.101 3 C 0.221 3.779 4 H -0.009 1.009 5 C -0.558 4.558 6 H 0.054 0.946 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.952 3.048 10 H -0.280 1.280 11 H -0.283 1.283 12 H -0.266 1.266 13 N -0.677 5.677 14 C 0.093 3.907 15 C -0.032 4.032 16 H 0.080 0.920 17 C -0.138 4.138 18 C 0.121 3.879 19 C -0.179 4.179 20 C -0.077 4.077 21 C -0.177 4.177 22 C 0.082 3.918 23 N -0.519 5.519 24 H 0.057 0.943 25 H 0.047 0.953 26 H 0.025 0.975 27 H 0.032 0.968 28 H 0.061 0.939 29 H 0.262 0.738 30 H 0.334 0.666 31 H 0.034 0.966 32 H 0.015 0.985 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.145 0.855 37 H 0.164 0.836 38 H 0.167 0.833 39 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.200 13.749 -9.827 17.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.140 4.140 3 C 0.112 3.888 4 H 0.009 0.991 5 C -0.597 4.597 6 H 0.072 0.928 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.778 3.222 10 H -0.206 1.206 11 H -0.209 1.209 12 H -0.191 1.191 13 N -0.307 5.307 14 C -0.038 4.038 15 C -0.052 4.052 16 H 0.099 0.901 17 C -0.196 4.196 18 C -0.016 4.016 19 C -0.198 4.198 20 C -0.103 4.103 21 C -0.196 4.196 22 C -0.075 4.075 23 N -0.228 5.228 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.045 0.955 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.152 0.848 31 H 0.053 0.947 32 H 0.033 0.967 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.163 0.837 37 H 0.181 0.819 38 H 0.184 0.816 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -4.555 12.944 -9.459 16.667 hybrid contribution 2.459 0.594 0.670 2.617 sum -2.096 13.538 -8.789 16.276 Atomic orbital electron populations 1.21584 0.96664 0.99990 1.00225 1.21349 0.94212 0.98247 1.00183 1.18917 0.91857 0.91581 0.86423 0.99090 1.22161 0.93820 1.38066 1.05658 0.92799 1.25705 1.02269 0.94736 0.95477 1.70022 1.36508 1.38860 1.09812 0.85654 0.80827 0.77439 0.78298 1.20561 1.20854 1.19073 1.60790 1.54617 1.06739 1.08592 1.21561 0.97322 0.89147 0.95752 1.19975 1.00621 0.88912 0.95649 0.90143 1.21843 0.98095 1.02708 0.96943 1.21307 0.89198 0.96493 0.94614 1.22240 1.00589 0.94684 1.02319 1.22010 0.98298 0.95510 0.94467 1.22492 0.93618 1.02541 1.00953 1.23253 1.01091 0.87770 0.95349 1.67466 1.23847 1.18811 1.12712 0.92365 0.93351 0.95529 0.94904 0.92080 0.92914 0.84808 0.94728 0.96714 0.91502 0.91288 0.91893 0.83737 0.81885 0.81552 0.80783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.39 9.85 71.98 0.71 -4.68 16 2 C -0.10 -4.99 5.45 30.60 0.17 -4.83 16 3 C 0.22 11.35 1.97 44.17 0.09 11.43 16 4 H -0.01 -0.52 7.70 -2.39 -0.02 -0.54 16 5 C -0.56 -30.42 8.47 25.60 0.22 -30.20 16 6 H 0.05 2.86 7.73 -2.91 -0.02 2.84 16 7 C 0.02 0.99 5.29 84.66 0.45 1.44 16 8 N -0.91 -52.99 11.29 21.45 0.24 -52.75 16 9 Si 0.95 43.37 29.54 68.60 2.03 45.39 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 13 N -0.68 -28.88 5.58 -495.43 -2.76 -31.64 16 14 C 0.09 3.68 4.95 86.30 0.43 4.10 16 15 C -0.03 -1.01 2.91 -11.54 -0.03 -1.05 16 16 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 17 C -0.14 -3.58 8.39 71.98 0.60 -2.97 16 18 C 0.12 3.66 5.79 42.55 0.25 3.91 16 19 C -0.18 -4.43 9.18 22.36 0.21 -4.22 16 20 C -0.08 -1.49 10.18 22.47 0.23 -1.26 16 21 C -0.18 -3.23 10.11 22.36 0.23 -3.00 16 22 C 0.08 1.91 11.18 84.67 0.95 2.86 16 23 N -0.52 -16.11 10.27 -183.88 -1.89 -18.00 16 24 H 0.06 2.37 7.63 -2.39 -0.02 2.35 16 25 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.06 3.38 5.95 -2.39 -0.01 3.37 16 29 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 30 H 0.33 13.54 6.85 -89.69 -0.61 12.92 16 31 H 0.03 1.53 7.92 -2.39 -0.02 1.51 16 32 H 0.01 0.61 8.12 -2.39 -0.02 0.59 16 33 H 0.07 1.77 6.81 -2.39 -0.02 1.75 16 34 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 35 H 0.06 1.52 6.49 -2.39 -0.02 1.51 16 36 H 0.14 3.20 6.32 -2.91 -0.02 3.18 16 37 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 38 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 39 H 0.18 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -64.22 316.44 2.50 -61.72 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: 0.41 Total: 23.75 kcal Atomic # 6 Polarization: -32.95 SS G_CDS: 4.48 Total: -28.47 kcal Atomic # 7 Polarization: -97.98 SS G_CDS: -4.41 Total: -102.39 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -64.22 2.50 -61.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692706545.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.469 kcal (2) G-P(sol) polarization free energy of solvation -64.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds