Wall clock time and date at job start Mon Mar 30 2020 05:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47295 * 2 1 4 4 C 1.38670 * 120.41474 * 264.97170 * 3 2 1 5 5 C 1.38630 * 118.41933 * 180.02562 * 4 3 2 6 6 C 1.38231 * 119.16017 * 0.02562 * 5 4 3 7 7 N 1.31859 * 120.76249 * 359.72890 * 6 5 4 8 8 C 1.31887 * 121.72311 * 0.56121 * 7 6 5 9 9 C 1.50700 * 119.61203 * 179.71127 * 8 7 6 10 10 N 1.46900 * 109.46994 * 269.72575 * 9 8 7 11 11 C 1.46900 * 110.99503 * 180.02562 * 10 9 8 12 12 H 1.08995 * 109.47586 * 35.00637 * 11 10 9 13 13 C 1.53005 * 109.47181 * 274.99918 * 11 10 9 14 14 C 1.53002 * 109.46648 * 155.00453 * 11 10 9 15 15 C 1.50706 * 109.47153 * 294.99361 * 14 11 10 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 11 17 17 C 1.37871 * 120.00434 * 180.02562 * 15 14 11 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46758 * 269.72576 * 19 17 15 21 21 H 1.48499 * 109.47026 * 29.72423 * 19 17 15 22 22 H 1.48496 * 109.47474 * 149.72459 * 19 17 15 23 23 H 1.08997 * 109.46917 * 60.00131 * 1 2 3 24 24 H 1.08997 * 109.47676 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47141 * 300.00089 * 1 2 3 26 26 H 1.09002 * 109.47223 * 239.99146 * 2 1 3 27 27 H 1.09005 * 109.47164 * 120.00033 * 2 1 3 28 28 H 1.08006 * 120.79441 * 0.05174 * 4 3 2 29 29 H 1.08004 * 120.41951 * 179.97438 * 5 4 3 30 30 H 1.07999 * 119.61554 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.46503 * 149.73085 * 9 8 7 32 32 H 1.08999 * 109.47424 * 29.73011 * 9 8 7 33 33 H 1.00892 * 110.99857 * 303.95935 * 10 9 8 34 34 H 1.08996 * 109.46870 * 300.00309 * 13 11 10 35 35 H 1.09001 * 109.46894 * 60.00465 * 13 11 10 36 36 H 1.09002 * 109.46592 * 180.02562 * 13 11 10 37 37 H 1.09004 * 109.47178 * 175.00151 * 14 11 10 38 38 H 1.08993 * 109.47411 * 54.99833 * 14 11 10 39 39 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3652 2.0477 -1.1913 5 6 2.8236 3.3552 -1.1431 6 6 2.9333 3.9857 0.0821 7 7 2.6030 3.3599 1.1947 8 6 2.1687 2.1146 1.1871 9 6 1.8105 1.4430 2.4878 10 7 2.9948 0.7643 3.0308 11 6 2.6824 0.0964 4.3013 12 1 1.6634 -0.2891 4.2682 13 6 2.8115 1.0990 5.4498 14 6 3.6585 -1.0609 4.5224 15 6 3.4461 -2.1075 3.4591 16 1 2.6907 -1.9615 2.7011 17 6 4.2159 -3.2512 3.4538 18 7 5.1394 -3.4265 4.3737 19 14 3.9531 -4.5481 2.1354 20 1 2.9459 -5.5336 2.6043 21 1 3.4679 -3.8982 0.8915 22 1 5.2363 -5.2437 1.8623 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5140 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.2692 1.5299 -2.1342 29 1 3.0923 3.8742 -2.0513 30 1 3.2900 5.0041 0.1281 31 1 1.0208 0.7121 2.3138 32 1 1.4625 2.1916 3.1995 33 1 3.3750 0.1107 2.3628 34 1 3.8305 1.4843 5.4829 35 1 2.1161 1.9234 5.2923 36 1 2.5801 0.6031 6.3926 37 1 3.4844 -1.5004 5.5046 38 1 4.6815 -0.6890 4.4670 39 1 5.2761 -2.7530 5.0582 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695808466.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:49 Heat of formation + Delta-G solvation = 6.915382 kcal Electronic energy + Delta-G solvation = -18256.518581 eV Core-core repulsion = 15583.827107 eV Total energy + Delta-G solvation = -2672.691474 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.32140 -36.77553 -34.70260 -33.33736 -32.22307 -30.40058 -29.08282 -27.05430 -25.32394 -24.19366 -22.93657 -21.78567 -21.00465 -19.66806 -16.86900 -16.72015 -16.37770 -15.35683 -14.86555 -14.60881 -13.94205 -13.77333 -13.58923 -13.52456 -13.11684 -12.91340 -12.47680 -12.35289 -12.02411 -11.81118 -11.38185 -11.32456 -11.21495 -10.92512 -10.77102 -10.67158 -10.48444 -10.15811 -9.66990 -9.52762 -9.21761 -8.70569 -8.55689 -8.35248 -7.69952 -6.37938 -4.07775 1.19273 1.39061 3.39803 3.42913 3.58188 3.84913 4.42958 4.51352 4.72147 4.84109 4.94590 5.04890 5.13902 5.31248 5.40594 5.43489 5.48151 5.61243 5.69860 5.82695 5.86638 5.99685 6.02537 6.07558 6.13968 6.23324 6.26471 6.29460 6.42929 6.47373 6.79996 6.81097 6.86813 7.28422 7.41589 7.89897 8.13226 8.17077 8.22203 8.41984 8.85824 9.64788 11.02698 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019202 B = 0.006944 C = 0.005797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.796309 B = 4031.436801 C = 4828.663722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 C -0.123 4.123 4 C -0.077 4.077 5 C -0.179 4.179 6 C 0.090 3.910 7 N -0.467 5.467 8 C 0.145 3.855 9 C 0.103 3.897 10 N -0.672 5.672 11 C 0.096 3.904 12 H 0.032 0.968 13 C -0.136 4.136 14 C 0.006 3.994 15 C -0.603 4.603 16 H 0.046 0.954 17 C 0.018 3.982 18 N -0.910 5.910 19 Si 1.067 2.933 20 H -0.288 1.288 21 H -0.289 1.289 22 H -0.284 1.284 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.151 0.849 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.354 0.646 34 H 0.055 0.945 35 H 0.040 0.960 36 H 0.047 0.953 37 H 0.013 0.987 38 H 0.017 0.983 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.980 10.654 -10.296 16.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.128 4.128 3 C -0.125 4.125 4 C -0.103 4.103 5 C -0.199 4.199 6 C -0.068 4.068 7 N -0.175 5.175 8 C 0.007 3.993 9 C -0.027 4.027 10 N -0.307 5.307 11 C -0.013 4.013 12 H 0.050 0.950 13 C -0.195 4.195 14 C -0.031 4.031 15 C -0.641 4.641 16 H 0.064 0.936 17 C -0.186 4.186 18 N -0.546 5.546 19 Si 0.895 3.105 20 H -0.215 1.215 21 H -0.215 1.215 22 H -0.210 1.210 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.104 0.896 28 H 0.148 0.852 29 H 0.148 0.852 30 H 0.169 0.831 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.175 0.825 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.031 0.969 38 H 0.035 0.965 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.119 10.181 -9.720 15.774 hybrid contribution -1.055 0.398 -0.709 1.333 sum -8.174 10.580 -10.430 16.957 Atomic orbital electron populations 1.21746 0.94638 1.02058 1.01765 1.20593 0.96211 0.91814 1.04151 1.20794 1.00354 0.97685 0.93705 1.21439 0.96359 0.94600 0.97926 1.22067 1.02368 0.95944 0.99512 1.22709 0.96438 0.99791 0.87840 1.67514 1.09608 1.09551 1.30850 1.21140 0.93816 0.89861 0.94478 1.20883 0.93223 0.97150 0.91418 1.60561 1.27531 1.35816 1.06797 1.21477 0.98333 0.93435 0.88094 0.95047 1.21810 1.01487 0.98587 0.97568 1.19415 0.94532 0.92079 0.97082 1.21989 1.22252 1.05778 1.14099 0.93616 1.25763 0.93350 0.99088 1.00435 1.70733 1.31513 1.37602 1.14774 0.83577 0.76262 0.75593 0.75034 1.21527 1.21474 1.20985 0.92903 0.91964 0.92498 0.90742 0.89623 0.85165 0.85202 0.83139 0.93697 0.90182 0.82461 0.92630 0.94098 0.93358 0.96881 0.96471 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.70 37.16 0.36 -1.36 16 2 C -0.09 -1.24 5.38 -27.89 -0.15 -1.39 16 3 C -0.12 -1.79 5.15 -104.49 -0.54 -2.33 16 4 C -0.08 -0.96 9.84 -39.28 -0.39 -1.34 16 5 C -0.18 -2.06 10.11 -39.44 -0.40 -2.45 16 6 C 0.09 1.18 11.18 -17.54 -0.20 0.98 16 7 N -0.47 -7.68 10.27 -9.47 -0.10 -7.77 16 8 C 0.15 2.39 6.29 -82.59 -0.52 1.87 16 9 C 0.10 1.77 5.04 -4.98 -0.03 1.75 16 10 N -0.67 -13.54 6.30 -107.99 -0.68 -14.22 16 11 C 0.10 2.02 2.59 -67.71 -0.18 1.85 16 12 H 0.03 0.67 7.80 -51.93 -0.40 0.27 16 13 C -0.14 -2.54 9.42 37.16 0.35 -2.19 16 14 C 0.01 0.16 3.88 -27.88 -0.11 0.05 16 15 C -0.60 -16.45 8.12 -34.44 -0.28 -16.73 16 16 H 0.05 1.21 7.49 -52.49 -0.39 0.81 16 17 C 0.02 0.51 5.46 -17.82 -0.10 0.42 16 18 N -0.91 -27.65 13.65 55.43 0.76 -26.89 16 19 Si 1.07 24.86 29.90 -169.99 -5.08 19.78 16 20 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.70 6.91 -51.93 -0.36 0.34 16 26 H 0.07 0.94 8.06 -51.93 -0.42 0.52 16 27 H 0.09 1.41 6.26 -51.93 -0.33 1.09 16 28 H 0.13 1.28 8.06 -52.48 -0.42 0.85 16 29 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 30 H 0.15 1.53 8.06 -52.49 -0.42 1.10 16 31 H 0.05 0.74 5.34 -51.93 -0.28 0.46 16 32 H 0.08 1.37 7.44 -51.93 -0.39 0.98 16 33 H 0.35 7.73 6.44 -39.30 -0.25 7.48 16 34 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.04 0.69 7.45 -51.93 -0.39 0.30 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.01 0.35 8.01 -51.93 -0.42 -0.07 16 38 H 0.02 0.47 8.00 -51.93 -0.42 0.05 16 39 H 0.27 8.23 7.22 -40.82 -0.29 7.94 16 LS Contribution 316.79 15.07 4.77 4.77 Total: -1.00 -30.66 316.79 -8.58 -39.24 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -6.09 Total: 5.98 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: -2.16 Total: -20.89 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: -0.02 Total: -48.89 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.08 Total: 19.78 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.66 -8.58 -39.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695808466.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.157 kcal (2) G-P(sol) polarization free energy of solvation -30.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds