Wall clock time and date at job start Mon Mar 30 2020 05:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47295 * 2 1 4 4 C 1.38670 * 120.41474 * 264.97170 * 3 2 1 5 5 C 1.38630 * 118.41933 * 180.02562 * 4 3 2 6 6 C 1.38231 * 119.16017 * 0.02562 * 5 4 3 7 7 N 1.31859 * 120.76249 * 359.72890 * 6 5 4 8 8 C 1.31887 * 121.72311 * 0.56121 * 7 6 5 9 9 C 1.50700 * 119.61203 * 179.71127 * 8 7 6 10 10 N 1.46900 * 109.46994 * 269.72575 * 9 8 7 11 11 C 1.46900 * 110.99503 * 180.02562 * 10 9 8 12 12 H 1.08995 * 109.47586 * 35.00637 * 11 10 9 13 13 C 1.53005 * 109.47181 * 274.99918 * 11 10 9 14 14 C 1.53002 * 109.46648 * 155.00453 * 11 10 9 15 15 C 1.50706 * 109.47153 * 294.99361 * 14 11 10 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 11 17 17 C 1.37871 * 120.00434 * 180.02562 * 15 14 11 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46758 * 269.72576 * 19 17 15 21 21 H 1.48499 * 109.47026 * 29.72423 * 19 17 15 22 22 H 1.48496 * 109.47474 * 149.72459 * 19 17 15 23 23 H 1.08997 * 109.46917 * 60.00131 * 1 2 3 24 24 H 1.08997 * 109.47676 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47141 * 300.00089 * 1 2 3 26 26 H 1.09002 * 109.47223 * 239.99146 * 2 1 3 27 27 H 1.09005 * 109.47164 * 120.00033 * 2 1 3 28 28 H 1.08006 * 120.79441 * 0.05174 * 4 3 2 29 29 H 1.08004 * 120.41951 * 179.97438 * 5 4 3 30 30 H 1.07999 * 119.61554 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.46503 * 149.73085 * 9 8 7 32 32 H 1.08999 * 109.47424 * 29.73011 * 9 8 7 33 33 H 1.00892 * 110.99857 * 303.95935 * 10 9 8 34 34 H 1.08996 * 109.46870 * 300.00309 * 13 11 10 35 35 H 1.09001 * 109.46894 * 60.00465 * 13 11 10 36 36 H 1.09002 * 109.46592 * 180.02562 * 13 11 10 37 37 H 1.09004 * 109.47178 * 175.00151 * 14 11 10 38 38 H 1.08993 * 109.47411 * 54.99833 * 14 11 10 39 39 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3652 2.0477 -1.1913 5 6 2.8236 3.3552 -1.1431 6 6 2.9333 3.9857 0.0821 7 7 2.6030 3.3599 1.1947 8 6 2.1687 2.1146 1.1871 9 6 1.8105 1.4430 2.4878 10 7 2.9948 0.7643 3.0308 11 6 2.6824 0.0964 4.3013 12 1 1.6634 -0.2891 4.2682 13 6 2.8115 1.0990 5.4498 14 6 3.6585 -1.0609 4.5224 15 6 3.4461 -2.1075 3.4591 16 1 2.6907 -1.9615 2.7011 17 6 4.2159 -3.2512 3.4538 18 7 5.1394 -3.4265 4.3737 19 14 3.9531 -4.5481 2.1354 20 1 2.9459 -5.5336 2.6043 21 1 3.4679 -3.8982 0.8915 22 1 5.2363 -5.2437 1.8623 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5140 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.2692 1.5299 -2.1342 29 1 3.0923 3.8742 -2.0513 30 1 3.2900 5.0041 0.1281 31 1 1.0208 0.7121 2.3138 32 1 1.4625 2.1916 3.1995 33 1 3.3750 0.1107 2.3628 34 1 3.8305 1.4843 5.4829 35 1 2.1161 1.9234 5.2923 36 1 2.5801 0.6031 6.3926 37 1 3.4844 -1.5004 5.5046 38 1 4.6815 -0.6890 4.4670 39 1 5.2761 -2.7530 5.0582 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695808466.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:48 Heat of formation + Delta-G solvation = -12.248002 kcal Electronic energy + Delta-G solvation = -18257.349567 eV Core-core repulsion = 15583.827107 eV Total energy + Delta-G solvation = -2673.522460 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.38615 -38.41194 -35.86232 -35.12552 -33.65414 -31.68868 -30.28502 -28.97475 -26.67997 -25.22273 -24.94438 -22.96227 -22.05719 -21.41397 -18.91070 -17.88997 -17.52846 -16.66681 -16.28631 -15.94667 -15.63801 -15.08155 -14.93042 -14.85429 -14.39527 -14.20077 -13.92937 -13.55072 -13.32693 -13.25837 -13.03793 -12.96171 -12.65297 -12.52440 -12.27419 -12.17525 -11.94534 -11.78624 -11.42850 -10.67249 -10.62270 -10.54438 -10.29032 -9.77791 -9.28515 -8.65914 -6.36153 0.15849 0.39266 1.51449 1.60541 1.76923 2.56860 2.76189 3.17128 3.34040 3.54133 3.74643 3.88460 3.97350 4.12103 4.15427 4.36802 4.40624 4.41891 4.52034 4.54711 4.57972 4.58743 4.75811 4.88007 4.91545 5.02542 5.03462 5.05250 5.15595 5.24161 5.26945 5.29526 5.39434 5.42320 5.82679 5.98020 6.19271 6.24130 6.46615 6.59959 7.12790 7.45663 8.74717 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019202 B = 0.006944 C = 0.005797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.796309 B = 4031.436801 C = 4828.663722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 C -0.133 4.133 4 C -0.079 4.079 5 C -0.164 4.164 6 C 0.076 3.924 7 N -0.500 5.500 8 C 0.116 3.884 9 C 0.110 3.890 10 N -0.677 5.677 11 C 0.103 3.897 12 H 0.030 0.970 13 C -0.128 4.128 14 C 0.011 3.989 15 C -0.605 4.605 16 H 0.053 0.947 17 C -0.037 4.037 18 N -0.939 5.939 19 Si 1.114 2.886 20 H -0.274 1.274 21 H -0.263 1.263 22 H -0.287 1.287 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.046 0.954 26 H 0.088 0.912 27 H 0.053 0.947 28 H 0.161 0.839 29 H 0.170 0.830 30 H 0.177 0.823 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.341 0.659 34 H 0.046 0.954 35 H 0.060 0.940 36 H 0.057 0.943 37 H -0.006 1.006 38 H -0.010 1.010 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.059 11.422 -13.037 19.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.126 4.126 3 C -0.135 4.135 4 C -0.105 4.105 5 C -0.184 4.184 6 C -0.081 4.081 7 N -0.209 5.209 8 C -0.021 4.021 9 C -0.019 4.019 10 N -0.310 5.310 11 C -0.007 4.007 12 H 0.048 0.952 13 C -0.186 4.186 14 C -0.026 4.026 15 C -0.642 4.642 16 H 0.071 0.929 17 C -0.234 4.234 18 N -0.577 5.577 19 Si 0.935 3.065 20 H -0.200 1.200 21 H -0.187 1.187 22 H -0.213 1.213 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.066 0.934 26 H 0.107 0.893 27 H 0.071 0.929 28 H 0.178 0.822 29 H 0.187 0.813 30 H 0.194 0.806 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.161 0.839 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.012 0.988 38 H 0.008 0.992 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.225 10.980 -12.448 18.524 hybrid contribution -0.708 0.271 0.104 0.766 sum -8.933 11.252 -12.344 18.941 Atomic orbital electron populations 1.21715 0.93272 1.02567 1.02174 1.20568 0.97422 0.91456 1.03160 1.20907 1.00675 0.97870 0.94053 1.21845 0.95333 0.95118 0.98207 1.22496 1.00060 0.95529 1.00304 1.23264 0.96063 1.00959 0.87806 1.67431 1.10705 1.09866 1.32920 1.20974 0.96128 0.90528 0.94462 1.20808 0.92036 0.96810 0.92291 1.60584 1.29287 1.34995 1.06144 1.21329 0.96652 0.92832 0.89852 0.95222 1.21725 1.01522 0.98526 0.96867 1.19312 0.94172 0.93396 0.95728 1.22324 1.21792 1.05915 1.14215 0.92869 1.27320 0.92653 1.01752 1.01702 1.70878 1.33426 1.37598 1.15789 0.82992 0.76443 0.73546 0.73501 1.20004 1.18707 1.21282 0.91099 0.91392 0.93445 0.89323 0.92873 0.82166 0.81271 0.80558 0.93299 0.90486 0.83885 0.93495 0.92080 0.92446 0.98795 0.99176 0.93574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.70 71.98 0.70 -2.40 16 2 C -0.09 -2.32 5.38 29.85 0.16 -2.16 16 3 C -0.13 -3.65 5.15 -19.78 -0.10 -3.75 16 4 C -0.08 -1.70 9.84 22.47 0.22 -1.48 16 5 C -0.16 -3.16 10.11 22.36 0.23 -2.93 16 6 C 0.08 1.83 11.18 84.69 0.95 2.77 16 7 N -0.50 -16.00 10.27 -183.88 -1.89 -17.89 16 8 C 0.12 3.77 6.29 42.54 0.27 4.04 16 9 C 0.11 3.81 5.04 85.56 0.43 4.24 16 10 N -0.68 -27.80 6.30 -495.57 -3.12 -30.92 16 11 C 0.10 4.43 2.59 44.92 0.12 4.55 16 12 H 0.03 1.28 7.80 -2.39 -0.02 1.26 16 13 C -0.13 -4.78 9.42 71.98 0.68 -4.11 16 14 C 0.01 0.59 3.88 29.85 0.12 0.71 16 15 C -0.60 -33.59 8.12 25.60 0.21 -33.38 16 16 H 0.05 2.83 7.49 -2.91 -0.02 2.81 16 17 C -0.04 -2.11 5.46 84.65 0.46 -1.65 16 18 N -0.94 -58.59 13.65 21.45 0.29 -58.30 16 19 Si 1.11 49.61 29.90 68.60 2.05 51.66 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 21 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 22 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 23 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.05 1.12 6.91 -2.38 -0.02 1.10 16 26 H 0.09 2.03 8.06 -2.39 -0.02 2.01 16 27 H 0.05 1.74 6.26 -2.38 -0.01 1.73 16 28 H 0.16 2.41 8.06 -2.91 -0.02 2.38 16 29 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 30 H 0.18 3.07 8.06 -2.91 -0.02 3.05 16 31 H 0.05 1.63 5.34 -2.39 -0.01 1.62 16 32 H 0.08 2.65 7.44 -2.39 -0.02 2.64 16 33 H 0.34 15.33 6.44 -89.70 -0.58 14.75 16 34 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.06 2.01 7.45 -2.39 -0.02 2.00 16 36 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 37 H -0.01 -0.35 8.01 -2.39 -0.02 -0.37 16 38 H -0.01 -0.58 8.00 -2.39 -0.02 -0.60 16 39 H 0.25 16.22 7.22 -92.71 -0.67 15.55 16 Total: -1.00 -67.86 316.79 2.31 -65.55 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: 0.55 Total: 25.44 kcal Atomic # 6 Polarization: -39.98 SS G_CDS: 4.43 Total: -35.55 kcal Atomic # 7 Polarization: -102.38 SS G_CDS: -4.72 Total: -107.10 kcal Atomic # 14 Polarization: 49.61 SS G_CDS: 2.05 Total: 51.66 kcal Total: -67.86 2.31 -65.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695808466.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.298 kcal (2) G-P(sol) polarization free energy of solvation -67.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds