Wall clock time and date at job start Mon Mar 30 2020 05:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38681 * 120.41802 * 2 1 4 4 C 1.38629 * 118.42000 * 179.71084 * 3 2 1 5 5 C 1.38225 * 119.15877 * 0.55200 * 4 3 2 6 6 C 1.50706 * 119.61903 * 179.71045 * 5 4 3 7 7 N 1.46900 * 109.46923 * 94.72263 * 6 5 4 8 8 C 1.46904 * 110.99558 * 180.02562 * 7 6 5 9 9 H 1.09006 * 109.47172 * 35.00472 * 8 7 6 10 10 C 1.52999 * 109.47184 * 275.00334 * 8 7 6 11 11 C 1.53003 * 109.46691 * 155.00265 * 8 7 6 12 12 C 1.50702 * 109.47189 * 294.99913 * 11 8 7 13 13 H 1.08003 * 119.99933 * 0.02562 * 12 11 8 14 14 C 1.37879 * 119.99923 * 180.02562 * 12 11 8 15 15 N 1.31508 * 119.99828 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99900 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.46921 * 60.00359 * 16 14 12 18 18 H 1.48503 * 109.47003 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47313 * 299.99960 * 16 14 12 20 20 N 1.31858 * 120.76467 * 359.43178 * 5 4 3 21 21 C 1.31877 * 121.72478 * 0.27882 * 20 5 4 22 22 C 1.50701 * 119.61605 * 179.97438 * 21 20 5 23 23 H 1.09005 * 109.46888 * 270.02408 * 1 2 3 24 24 H 1.08997 * 109.47208 * 30.02180 * 1 2 3 25 25 H 1.08997 * 109.47180 * 150.02673 * 1 2 3 26 26 H 1.08000 * 120.78882 * 0.02562 * 3 2 1 27 27 H 1.07994 * 120.41933 * 180.28211 * 4 3 2 28 28 H 1.09000 * 109.47292 * 214.73124 * 6 5 4 29 29 H 1.09001 * 109.46828 * 334.72721 * 6 5 4 30 30 H 1.00892 * 111.00116 * 303.95715 * 7 6 5 31 31 H 1.09000 * 109.46799 * 180.02562 * 10 8 7 32 32 H 1.08997 * 109.47016 * 299.99581 * 10 8 7 33 33 H 1.08998 * 109.47198 * 60.00538 * 10 8 7 34 34 H 1.08996 * 109.46907 * 55.00154 * 11 8 7 35 35 H 1.09004 * 109.46874 * 174.99929 * 11 8 7 36 36 H 0.96998 * 120.00116 * 179.97438 * 15 14 12 37 37 H 1.08996 * 109.46928 * 90.00031 * 22 21 20 38 38 H 1.08999 * 109.47114 * 209.99946 * 22 21 20 39 39 H 1.08998 * 109.47517 * 330.00163 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1476 0.0062 5 6 4.2256 -0.0822 0.0004 6 6 5.7312 -0.1468 0.0004 7 7 6.2153 -0.2883 1.3801 8 6 7.6823 -0.3540 1.4191 9 1 8.0956 0.2889 0.6419 10 6 8.1347 -1.7962 1.1821 11 6 8.1776 0.1175 2.7879 12 6 7.8388 1.5745 2.9701 13 1 7.3215 2.1106 2.1881 14 6 8.1892 2.2233 4.1352 15 7 8.8195 1.5707 5.0871 16 14 7.7686 4.0292 4.3614 17 1 6.2967 4.2086 4.2796 18 1 8.2495 4.4868 5.6898 19 1 8.4247 4.8276 3.2949 20 7 3.5254 -1.1995 0.0005 21 6 2.2067 -1.1915 0.0005 22 6 1.4540 -2.4971 0.0000 23 1 -0.3633 0.0004 1.0277 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3633 -0.8902 -0.5134 26 1 1.6889 2.1424 0.0004 27 1 4.1735 2.0592 0.0109 28 1 6.0582 -1.0033 -0.5891 29 1 6.1341 0.7682 -0.4339 30 1 5.8715 0.4605 1.9625 31 1 9.2232 -1.8450 1.2115 32 1 7.7215 -2.4390 1.9593 33 1 7.7819 -2.1321 0.2070 34 1 7.6953 -0.4684 3.5703 35 1 9.2579 -0.0148 2.8486 36 1 9.0664 2.0271 5.9066 37 1 1.2726 -2.8123 1.0275 38 1 0.5015 -2.3672 -0.5138 39 1 2.0435 -3.2562 -0.5141 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695813698.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:06 Heat of formation + Delta-G solvation = 11.613539 kcal Electronic energy + Delta-G solvation = -17689.436212 eV Core-core repulsion = 15016.948466 eV Total energy + Delta-G solvation = -2672.487746 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.30959 -36.70681 -34.22843 -32.92933 -32.56687 -30.52086 -28.37113 -27.35637 -27.02662 -24.06539 -22.83859 -22.24525 -20.80809 -19.39766 -16.65664 -16.33461 -15.91648 -15.00609 -14.90585 -14.58706 -14.46294 -14.02468 -13.35626 -13.24549 -12.97270 -12.71850 -12.55688 -12.29323 -12.05467 -11.84844 -11.73367 -11.54874 -11.32212 -11.19304 -10.85425 -10.65750 -10.51753 -10.18969 -9.56608 -9.28740 -9.16009 -9.06716 -8.53728 -8.38170 -7.61457 -6.01977 -4.05213 1.20022 1.41998 3.30203 3.35500 3.36680 3.83316 4.33194 4.42983 4.72030 4.78402 4.91783 4.97952 5.20918 5.32667 5.38786 5.42190 5.54713 5.60206 5.63337 5.65997 5.82870 5.85449 5.98355 6.03871 6.18040 6.26072 6.30124 6.36104 6.38292 6.58283 6.85805 6.97250 6.99615 7.53088 7.64196 7.97572 8.06454 8.23554 8.29158 8.38106 9.00513 9.58606 11.08949 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.021628 B = 0.005412 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.299381 B = 5172.359587 C = 6032.832868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.150 4.150 3 C -0.075 4.075 4 C -0.169 4.169 5 C 0.144 3.856 6 C 0.107 3.893 7 N -0.673 5.673 8 C 0.088 3.912 9 H 0.030 0.970 10 C -0.135 4.135 11 C 0.020 3.980 12 C -0.525 4.525 13 H 0.050 0.950 14 C 0.061 3.939 15 N -0.891 5.891 16 Si 0.889 3.111 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.278 1.278 20 N -0.463 5.463 21 C 0.124 3.876 22 C -0.104 4.104 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.131 0.869 27 H 0.133 0.867 28 H 0.081 0.919 29 H 0.040 0.960 30 H 0.354 0.646 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.037 0.963 34 H 0.026 0.974 35 H 0.023 0.977 36 H 0.261 0.739 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.571 -3.272 -11.337 18.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.152 4.152 3 C -0.101 4.101 4 C -0.189 4.189 5 C 0.006 3.994 6 C -0.023 4.023 7 N -0.307 5.307 8 C -0.021 4.021 9 H 0.048 0.952 10 C -0.193 4.193 11 C -0.017 4.017 12 C -0.563 4.563 13 H 0.069 0.931 14 C -0.140 4.140 15 N -0.529 5.529 16 Si 0.717 3.283 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.203 1.203 20 N -0.172 5.172 21 C -0.014 4.014 22 C -0.161 4.161 23 H 0.089 0.911 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.148 0.852 27 H 0.151 0.849 28 H 0.099 0.901 29 H 0.058 0.942 30 H 0.175 0.825 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.044 0.956 35 H 0.041 0.959 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.107 -4.735 -11.136 18.586 hybrid contribution -0.342 2.948 0.114 2.970 sum -14.449 -1.787 -11.022 18.261 Atomic orbital electron populations 1.20761 0.90650 1.02737 1.02431 1.20646 0.97186 0.93781 1.03608 1.21401 0.93982 0.97882 0.96791 1.22022 0.95143 0.99316 1.02460 1.21260 0.96600 0.87919 0.93648 1.20823 0.87395 1.00649 0.93385 1.60542 1.10641 1.52663 1.06862 1.21642 0.85753 0.94458 1.00210 0.95194 1.21785 0.99515 0.97641 1.00329 1.19281 0.96544 0.95625 0.90228 1.21130 1.37950 0.95692 1.01523 0.93130 1.24979 0.95121 0.97942 0.95999 1.69946 1.39804 1.36389 1.06780 0.86710 0.78748 0.85548 0.77298 1.20272 1.21241 1.20334 1.67345 1.07044 1.31265 1.11538 1.21121 0.89825 0.94807 0.95676 1.20746 0.98983 0.93387 1.03029 0.91072 0.91728 0.91055 0.85159 0.84893 0.90086 0.94242 0.82545 0.93327 0.92608 0.94358 0.95564 0.95919 0.92886 0.90465 0.90772 0.90632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 9.62 36.00 0.35 -0.57 16 2 C -0.15 -1.84 5.90 -104.48 -0.62 -2.46 16 3 C -0.07 -0.95 9.86 -39.27 -0.39 -1.34 16 4 C -0.17 -2.48 9.72 -39.44 -0.38 -2.86 16 5 C 0.14 2.40 6.29 -82.58 -0.52 1.88 16 6 C 0.11 1.86 5.79 -4.97 -0.03 1.83 16 7 N -0.67 -13.69 6.30 -107.98 -0.68 -14.37 16 8 C 0.09 1.89 2.59 -67.71 -0.18 1.71 16 9 H 0.03 0.64 7.80 -51.93 -0.40 0.24 16 10 C -0.13 -2.53 9.41 37.16 0.35 -2.18 16 11 C 0.02 0.53 4.57 -27.88 -0.13 0.40 16 12 C -0.52 -14.47 8.12 -34.44 -0.28 -14.75 16 13 H 0.05 1.34 7.49 -52.48 -0.39 0.95 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 16 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 N -0.46 -7.78 10.19 -5.74 -0.06 -7.84 16 21 C 0.12 1.73 6.78 -82.59 -0.56 1.17 16 22 C -0.10 -1.08 9.77 36.01 0.35 -0.73 16 23 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 25 H 0.07 0.50 5.96 -51.93 -0.31 0.19 16 26 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 27 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 28 H 0.08 1.38 7.44 -51.93 -0.39 0.99 16 29 H 0.04 0.65 7.96 -51.93 -0.41 0.23 16 30 H 0.35 7.78 7.20 -39.30 -0.28 7.50 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.04 0.65 7.45 -51.93 -0.39 0.26 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.57 5.94 -51.93 -0.31 0.27 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 321.27 15.07 4.84 4.84 Total: -1.00 -30.91 321.27 -8.55 -39.46 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -6.25 Total: 3.64 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -2.13 Total: -16.26 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: 0.00 Total: -48.08 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.91 -8.55 -39.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813698.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.077 kcal (2) G-P(sol) polarization free energy of solvation -30.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds