Wall clock time and date at job start Mon Mar 30 2020 05:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38681 * 120.41802 * 2 1 4 4 C 1.38629 * 118.42000 * 179.71084 * 3 2 1 5 5 C 1.38225 * 119.15877 * 0.55200 * 4 3 2 6 6 C 1.50706 * 119.61903 * 179.71045 * 5 4 3 7 7 N 1.46900 * 109.46923 * 94.72263 * 6 5 4 8 8 C 1.46904 * 110.99558 * 180.02562 * 7 6 5 9 9 H 1.09006 * 109.47172 * 35.00472 * 8 7 6 10 10 C 1.52999 * 109.47184 * 275.00334 * 8 7 6 11 11 C 1.53003 * 109.46691 * 155.00265 * 8 7 6 12 12 C 1.50702 * 109.47189 * 294.99913 * 11 8 7 13 13 H 1.08003 * 119.99933 * 0.02562 * 12 11 8 14 14 C 1.37879 * 119.99923 * 180.02562 * 12 11 8 15 15 N 1.31508 * 119.99828 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99900 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.46921 * 60.00359 * 16 14 12 18 18 H 1.48503 * 109.47003 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47313 * 299.99960 * 16 14 12 20 20 N 1.31858 * 120.76467 * 359.43178 * 5 4 3 21 21 C 1.31877 * 121.72478 * 0.27882 * 20 5 4 22 22 C 1.50701 * 119.61605 * 179.97438 * 21 20 5 23 23 H 1.09005 * 109.46888 * 270.02408 * 1 2 3 24 24 H 1.08997 * 109.47208 * 30.02180 * 1 2 3 25 25 H 1.08997 * 109.47180 * 150.02673 * 1 2 3 26 26 H 1.08000 * 120.78882 * 0.02562 * 3 2 1 27 27 H 1.07994 * 120.41933 * 180.28211 * 4 3 2 28 28 H 1.09000 * 109.47292 * 214.73124 * 6 5 4 29 29 H 1.09001 * 109.46828 * 334.72721 * 6 5 4 30 30 H 1.00892 * 111.00116 * 303.95715 * 7 6 5 31 31 H 1.09000 * 109.46799 * 180.02562 * 10 8 7 32 32 H 1.08997 * 109.47016 * 299.99581 * 10 8 7 33 33 H 1.08998 * 109.47198 * 60.00538 * 10 8 7 34 34 H 1.08996 * 109.46907 * 55.00154 * 11 8 7 35 35 H 1.09004 * 109.46874 * 174.99929 * 11 8 7 36 36 H 0.96998 * 120.00116 * 179.97438 * 15 14 12 37 37 H 1.08996 * 109.46928 * 90.00031 * 22 21 20 38 38 H 1.08999 * 109.47114 * 209.99946 * 22 21 20 39 39 H 1.08998 * 109.47517 * 330.00163 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1476 0.0062 5 6 4.2256 -0.0822 0.0004 6 6 5.7312 -0.1468 0.0004 7 7 6.2153 -0.2883 1.3801 8 6 7.6823 -0.3540 1.4191 9 1 8.0956 0.2889 0.6419 10 6 8.1347 -1.7962 1.1821 11 6 8.1776 0.1175 2.7879 12 6 7.8388 1.5745 2.9701 13 1 7.3215 2.1106 2.1881 14 6 8.1892 2.2233 4.1352 15 7 8.8195 1.5707 5.0871 16 14 7.7686 4.0292 4.3614 17 1 6.2967 4.2086 4.2796 18 1 8.2495 4.4868 5.6898 19 1 8.4247 4.8276 3.2949 20 7 3.5254 -1.1995 0.0005 21 6 2.2067 -1.1915 0.0005 22 6 1.4540 -2.4971 0.0000 23 1 -0.3633 0.0004 1.0277 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3633 -0.8902 -0.5134 26 1 1.6889 2.1424 0.0004 27 1 4.1735 2.0592 0.0109 28 1 6.0582 -1.0033 -0.5891 29 1 6.1341 0.7682 -0.4339 30 1 5.8715 0.4605 1.9625 31 1 9.2232 -1.8450 1.2115 32 1 7.7215 -2.4390 1.9593 33 1 7.7819 -2.1321 0.2070 34 1 7.6953 -0.4684 3.5703 35 1 9.2579 -0.0148 2.8486 36 1 9.0664 2.0271 5.9066 37 1 1.2726 -2.8123 1.0275 38 1 0.5015 -2.3672 -0.5138 39 1 2.0435 -3.2562 -0.5141 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695813698.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:06 Heat of formation + Delta-G solvation = -7.870601 kcal Electronic energy + Delta-G solvation = -17690.281108 eV Core-core repulsion = 15016.948466 eV Total energy + Delta-G solvation = -2673.332642 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.36223 -38.33198 -35.52105 -34.50260 -33.90588 -32.03624 -29.31144 -29.22694 -28.22714 -25.47677 -24.58217 -23.29529 -21.92486 -21.15973 -18.51559 -17.76756 -17.11241 -16.51003 -16.45637 -15.89559 -15.71073 -15.34277 -14.82732 -14.32944 -14.04863 -13.68668 -13.64516 -13.50384 -13.47623 -13.35754 -13.13684 -12.95566 -12.82650 -12.60948 -12.53361 -12.39526 -12.10891 -11.96476 -11.29133 -11.03384 -10.59754 -10.57712 -10.28683 -9.58583 -9.20463 -8.19341 -6.30339 0.13990 0.38777 1.39020 1.41477 1.49112 2.39937 2.72772 3.12939 3.27814 3.56090 3.83891 3.89214 4.04777 4.09979 4.26570 4.38163 4.48220 4.59486 4.66759 4.69528 4.71099 4.75602 4.81373 4.86881 4.94599 4.99724 5.14782 5.19094 5.25821 5.28880 5.33286 5.41222 5.47155 5.52468 5.82717 5.87692 6.19550 6.35501 6.56397 6.84147 7.16109 7.38282 8.92306 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.021628 B = 0.005412 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.299381 B = 5172.359587 C = 6032.832868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.145 4.145 3 C -0.079 4.079 4 C -0.180 4.180 5 C 0.116 3.884 6 C 0.113 3.887 7 N -0.679 5.679 8 C 0.097 3.903 9 H 0.032 0.968 10 C -0.127 4.127 11 C 0.028 3.972 12 C -0.536 4.536 13 H 0.059 0.941 14 C 0.004 3.996 15 N -0.931 5.931 16 Si 0.961 3.039 17 H -0.267 1.267 18 H -0.285 1.285 19 H -0.267 1.267 20 N -0.495 5.495 21 C 0.103 3.897 22 C -0.102 4.102 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.161 0.839 27 H 0.139 0.861 28 H 0.080 0.920 29 H 0.047 0.953 30 H 0.341 0.659 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.059 0.941 34 H -0.006 1.006 35 H -0.002 1.002 36 H 0.263 0.737 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.955 -2.189 -12.510 21.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.147 4.147 3 C -0.104 4.104 4 C -0.200 4.200 5 C -0.022 4.022 6 C -0.016 4.016 7 N -0.312 5.312 8 C -0.013 4.013 9 H 0.050 0.950 10 C -0.185 4.185 11 C -0.009 4.009 12 C -0.574 4.574 13 H 0.077 0.923 14 C -0.194 4.194 15 N -0.571 5.571 16 Si 0.786 3.214 17 H -0.192 1.192 18 H -0.211 1.211 19 H -0.192 1.192 20 N -0.205 5.205 21 C -0.035 4.035 22 C -0.159 4.159 23 H 0.098 0.902 24 H 0.100 0.900 25 H 0.106 0.894 26 H 0.178 0.822 27 H 0.157 0.843 28 H 0.099 0.901 29 H 0.065 0.935 30 H 0.161 0.839 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.012 0.988 35 H 0.017 0.983 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.123 0.877 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.494 -3.662 -12.338 20.921 hybrid contribution 0.328 2.561 0.461 2.622 sum -16.166 -1.101 -11.877 20.090 Atomic orbital electron populations 1.20861 0.87568 1.04481 1.03462 1.21118 0.99362 0.92942 1.01250 1.21808 0.93293 0.99514 0.95787 1.22169 0.96421 0.98779 1.02656 1.21145 0.96051 0.88926 0.96093 1.20774 0.88617 1.00906 0.91318 1.60549 1.09622 1.52194 1.08804 1.21464 0.86662 0.95891 0.97255 0.95025 1.21701 1.00032 0.95659 1.01086 1.19129 0.94728 0.95020 0.92045 1.21485 1.37582 0.96464 1.01820 0.92292 1.25908 0.94917 1.02902 0.95668 1.70092 1.41118 1.38476 1.07394 0.85563 0.78942 0.79570 0.77345 1.19165 1.21074 1.19232 1.67282 1.08772 1.31763 1.12689 1.21753 0.89251 0.96995 0.95509 1.20836 0.99802 0.91594 1.03622 0.90164 0.90013 0.89379 0.82166 0.84300 0.90124 0.93484 0.83949 0.92472 0.93641 0.92224 0.98804 0.98349 0.92829 0.90052 0.87737 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 9.62 71.23 0.69 -0.71 16 2 C -0.14 -3.19 5.90 -19.77 -0.12 -3.31 16 3 C -0.08 -1.81 9.86 22.47 0.22 -1.59 16 4 C -0.18 -5.11 9.72 22.36 0.22 -4.89 16 5 C 0.12 3.83 6.29 42.55 0.27 4.10 16 6 C 0.11 3.93 5.79 85.56 0.50 4.42 16 7 N -0.68 -28.07 6.30 -495.54 -3.12 -31.19 16 8 C 0.10 4.19 2.59 44.92 0.12 4.30 16 9 H 0.03 1.36 7.80 -2.38 -0.02 1.34 16 10 C -0.13 -4.78 9.41 71.98 0.68 -4.10 16 11 C 0.03 1.51 4.57 29.85 0.14 1.65 16 12 C -0.54 -29.98 8.12 25.60 0.21 -29.77 16 13 H 0.06 3.13 7.49 -2.91 -0.02 3.11 16 14 C 0.00 0.24 5.46 84.66 0.46 0.71 16 15 N -0.93 -56.88 13.29 21.45 0.28 -56.59 16 16 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 17 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 18 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 19 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 20 N -0.49 -16.54 10.19 -172.08 -1.75 -18.30 16 21 C 0.10 2.74 6.78 42.54 0.29 3.03 16 22 C -0.10 -1.92 9.77 71.24 0.70 -1.22 16 23 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 24 H 0.08 0.82 8.10 -2.39 -0.02 0.80 16 25 H 0.09 0.86 5.96 -2.39 -0.01 0.85 16 26 H 0.16 2.63 8.06 -2.91 -0.02 2.60 16 27 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 28 H 0.08 2.74 7.44 -2.39 -0.02 2.73 16 29 H 0.05 1.53 7.96 -2.39 -0.02 1.52 16 30 H 0.34 15.37 7.20 -89.70 -0.65 14.72 16 31 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.06 1.98 7.45 -2.39 -0.02 1.96 16 34 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 35 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 36 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 37 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.10 1.27 5.94 -2.39 -0.01 1.26 16 39 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -67.95 321.27 2.17 -65.77 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.38 Total: 21.70 kcal Atomic # 6 Polarization: -31.74 SS G_CDS: 4.36 Total: -27.38 kcal Atomic # 7 Polarization: -101.49 SS G_CDS: -4.59 Total: -106.08 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -67.95 2.17 -65.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813698.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.904 kcal (2) G-P(sol) polarization free energy of solvation -67.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds