Wall clock time and date at job start Mon Mar 30 2020 05:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38674 * 120.42325 * 2 1 4 4 C 1.38620 * 118.42245 * 179.71038 * 3 2 1 5 5 C 1.38234 * 119.15947 * 0.54867 * 4 3 2 6 6 C 1.50701 * 119.61618 * 179.71100 * 5 4 3 7 7 N 1.46901 * 109.46921 * 94.72700 * 6 5 4 8 8 C 1.46906 * 110.99793 * 179.97438 * 7 6 5 9 9 H 1.09003 * 109.47279 * 325.00167 * 8 7 6 10 10 C 1.52995 * 109.46946 * 85.00144 * 8 7 6 11 11 C 1.53000 * 109.47281 * 205.00148 * 8 7 6 12 12 C 1.50701 * 109.47173 * 64.99751 * 11 8 7 13 13 H 1.08004 * 119.99635 * 0.02562 * 12 11 8 14 14 C 1.37874 * 120.00060 * 180.02562 * 12 11 8 15 15 N 1.31519 * 119.99692 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 120.00066 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47044 * 90.00053 * 16 14 12 18 18 H 1.48498 * 109.47246 * 209.99999 * 16 14 12 19 19 H 1.48502 * 109.47314 * 330.00044 * 16 14 12 20 20 N 1.31854 * 120.76564 * 359.43478 * 5 4 3 21 21 C 1.31883 * 121.72388 * 0.27682 * 20 5 4 22 22 C 1.50698 * 119.62023 * 179.97438 * 21 20 5 23 23 H 1.09000 * 109.46893 * 270.02389 * 1 2 3 24 24 H 1.09000 * 109.46552 * 30.02084 * 1 2 3 25 25 H 1.09000 * 109.47277 * 150.02379 * 1 2 3 26 26 H 1.08000 * 120.78239 * 359.97438 * 3 2 1 27 27 H 1.08001 * 120.42131 * 180.28281 * 4 3 2 28 28 H 1.09002 * 109.47060 * 214.72881 * 6 5 4 29 29 H 1.09001 * 109.47380 * 334.72969 * 6 5 4 30 30 H 1.00898 * 110.99877 * 56.04636 * 7 6 5 31 31 H 1.09003 * 109.47112 * 59.99921 * 10 8 7 32 32 H 1.09001 * 109.47056 * 179.97438 * 10 8 7 33 33 H 1.09000 * 109.47395 * 299.99746 * 10 8 7 34 34 H 1.08996 * 109.47600 * 185.00056 * 11 8 7 35 35 H 1.09003 * 109.47172 * 305.00516 * 11 8 7 36 36 H 0.97002 * 119.99962 * 180.02562 * 15 14 12 37 37 H 1.09003 * 109.47002 * 89.99881 * 22 21 20 38 38 H 1.08999 * 109.47565 * 210.00001 * 22 21 20 39 39 H 1.09004 * 109.46976 * 330.00187 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1958 0.0000 4 6 3.5946 1.1474 0.0062 5 6 4.2256 -0.0825 0.0005 6 6 5.7312 -0.1471 0.0005 7 7 6.2152 -0.2886 1.3803 8 6 7.6822 -0.3555 1.4193 9 1 8.0453 -0.8866 0.5393 10 6 8.2572 1.0622 1.4326 11 6 8.1256 -1.0976 2.6817 12 6 7.6628 -2.5300 2.6110 13 1 7.1083 -2.8766 1.7514 14 6 7.9473 -3.3981 3.6437 15 7 7.5438 -4.6484 3.5817 16 14 8.9056 -2.7985 5.1307 17 1 7.9606 -2.2839 6.1541 18 1 9.6888 -3.9237 5.7015 19 1 9.8294 -1.7112 4.7188 20 7 3.5254 -1.1998 0.0006 21 6 2.2066 -1.1917 0.0005 22 6 1.4538 -2.4972 0.0000 23 1 -0.3633 0.0004 1.0277 24 1 -0.3632 0.8898 -0.5142 25 1 -0.3634 -0.8902 -0.5135 26 1 1.6890 2.1423 -0.0004 27 1 4.1736 2.0591 0.0109 28 1 6.0581 -1.0037 -0.5889 29 1 6.1342 0.7679 -0.4338 30 1 5.8048 -1.0951 1.8265 31 1 7.8942 1.5933 2.3125 32 1 9.3457 1.0126 1.4620 33 1 7.9414 1.5909 0.5332 34 1 9.2126 -1.0702 2.7565 35 1 7.6889 -0.6176 3.5575 36 1 7.7436 -5.2590 4.3084 37 1 1.2723 -2.8124 1.0276 38 1 0.5013 -2.3673 -0.5137 39 1 2.0434 -3.2564 -0.5141 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695813703.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:09 Heat of formation + Delta-G solvation = 14.904850 kcal Electronic energy + Delta-G solvation = -17734.780886 eV Core-core repulsion = 15062.435861 eV Total energy + Delta-G solvation = -2672.345024 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.28427 -36.77927 -34.22953 -32.88787 -32.46920 -30.70268 -28.31460 -27.85056 -27.11020 -24.05270 -22.52494 -22.12829 -20.81938 -19.39484 -16.77519 -16.53594 -15.89710 -15.07910 -14.93407 -14.53564 -14.31316 -14.16545 -13.35052 -12.96157 -12.94078 -12.68813 -12.55221 -12.26265 -12.22339 -11.97272 -11.86742 -11.69271 -11.51055 -11.37127 -10.89524 -10.74446 -10.27321 -9.78951 -9.55421 -9.46189 -9.22677 -9.10869 -8.52047 -8.49232 -7.69252 -6.01674 -4.00050 1.23721 1.44522 3.33995 3.40878 3.44856 3.86234 4.36944 4.47946 4.75628 4.80972 4.95682 5.01121 5.14153 5.36448 5.40278 5.47175 5.57209 5.64125 5.70019 5.73336 5.79475 5.87178 5.92233 6.02676 6.11177 6.20162 6.21752 6.32187 6.43681 6.45133 6.73463 6.80067 6.89505 7.20509 7.30606 7.79609 7.89098 8.21551 8.29464 8.53797 9.01693 9.60587 11.11385 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.023149 B = 0.005417 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.245440 B = 5167.526452 C = 5971.106958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.150 4.150 3 C -0.078 4.078 4 C -0.159 4.159 5 C 0.143 3.857 6 C 0.107 3.893 7 N -0.678 5.678 8 C 0.095 3.905 9 H 0.037 0.963 10 C -0.138 4.138 11 C -0.016 4.016 12 C -0.523 4.523 13 H 0.071 0.929 14 C 0.069 3.931 15 N -0.901 5.901 16 Si 0.881 3.119 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.266 1.266 20 N -0.471 5.471 21 C 0.129 3.871 22 C -0.107 4.107 23 H 0.070 0.930 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.130 0.870 27 H 0.133 0.867 28 H 0.045 0.955 29 H 0.078 0.922 30 H 0.363 0.637 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.040 0.960 34 H 0.022 0.978 35 H 0.020 0.980 36 H 0.262 0.738 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.675 11.435 -8.015 18.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.153 4.153 3 C -0.104 4.104 4 C -0.179 4.179 5 C 0.005 3.995 6 C -0.023 4.023 7 N -0.313 5.313 8 C -0.014 4.014 9 H 0.055 0.945 10 C -0.196 4.196 11 C -0.054 4.054 12 C -0.561 4.561 13 H 0.089 0.911 14 C -0.132 4.132 15 N -0.539 5.539 16 Si 0.708 3.292 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.190 1.190 20 N -0.181 5.181 21 C -0.009 4.009 22 C -0.164 4.164 23 H 0.089 0.911 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.147 0.853 27 H 0.151 0.849 28 H 0.063 0.937 29 H 0.096 0.904 30 H 0.185 0.815 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.040 0.960 35 H 0.038 0.962 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.234 11.121 -7.785 17.620 hybrid contribution 0.238 0.147 0.565 0.630 sum -10.996 11.268 -7.220 17.321 Atomic orbital electron populations 1.20760 0.90652 1.02737 1.02415 1.20647 0.97189 0.93767 1.03653 1.21393 0.94059 0.97754 0.97181 1.21888 0.94773 0.99093 1.02154 1.21254 0.96537 0.88097 0.93656 1.20807 0.87512 1.01182 0.92762 1.60682 1.07697 1.49327 1.13602 1.21424 0.86351 0.94218 0.99396 0.94459 1.21836 0.99423 0.97455 1.00877 1.19768 0.96479 0.95952 0.93200 1.21107 1.36057 0.92936 1.06009 0.91087 1.25006 0.95341 0.94712 0.98184 1.69931 1.46655 1.04383 1.32978 0.86766 0.80646 0.78479 0.83288 1.20311 1.21538 1.19037 1.67386 1.07461 1.31362 1.11875 1.21115 0.89647 0.94896 0.95253 1.20779 0.98955 0.93434 1.03255 0.91091 0.91774 0.91010 0.85254 0.84933 0.93691 0.90409 0.81501 0.92663 0.93220 0.94088 0.95999 0.96155 0.92804 0.90275 0.90761 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 9.62 36.01 0.35 -0.60 16 2 C -0.15 -1.88 5.90 -104.48 -0.62 -2.50 16 3 C -0.08 -0.95 9.86 -39.28 -0.39 -1.34 16 4 C -0.16 -2.21 9.72 -39.44 -0.38 -2.59 16 5 C 0.14 2.40 6.29 -82.58 -0.52 1.88 16 6 C 0.11 1.85 5.79 -4.97 -0.03 1.83 16 7 N -0.68 -13.59 6.30 -107.99 -0.68 -14.27 16 8 C 0.10 1.96 2.59 -67.71 -0.18 1.78 16 9 H 0.04 0.79 7.80 -51.93 -0.40 0.39 16 10 C -0.14 -2.33 9.41 37.16 0.35 -1.98 16 11 C -0.02 -0.40 3.64 -27.88 -0.10 -0.50 16 12 C -0.52 -14.93 8.67 -34.44 -0.30 -15.23 16 13 H 0.07 2.20 7.73 -52.48 -0.41 1.79 16 14 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 15 N -0.90 -28.05 13.96 55.43 0.77 -27.28 16 16 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 19 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 20 N -0.47 -8.47 10.19 -5.74 -0.06 -8.53 16 21 C 0.13 1.93 6.78 -82.59 -0.56 1.37 16 22 C -0.11 -1.29 9.77 36.00 0.35 -0.94 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 25 H 0.07 0.55 5.96 -51.93 -0.31 0.24 16 26 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 27 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 28 H 0.04 0.84 8.05 -51.93 -0.42 0.42 16 29 H 0.08 1.16 7.34 -51.93 -0.38 0.78 16 30 H 0.36 8.42 7.20 -39.29 -0.28 8.14 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.04 0.61 7.45 -51.93 -0.39 0.22 16 34 H 0.02 0.53 7.20 -51.93 -0.37 0.16 16 35 H 0.02 0.50 7.57 -51.93 -0.39 0.10 16 36 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.67 5.94 -51.93 -0.31 0.36 16 39 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 317.67 15.07 4.79 4.79 Total: -1.00 -31.92 317.67 -8.18 -40.10 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -6.21 Total: 4.66 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: -2.12 Total: -16.89 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: 0.03 Total: -50.08 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.92 -8.18 -40.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813703.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.005 kcal (2) G-P(sol) polarization free energy of solvation -31.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds