Wall clock time and date at job start Mon Mar 30 2020 05:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38225 * 119.62117 * 2 1 4 4 C 1.38623 * 119.16084 * 179.70611 * 3 2 1 5 5 C 1.50710 * 120.78843 * 180.27273 * 4 3 2 6 6 C 1.38671 * 118.42506 * 0.50749 * 4 3 2 7 7 C 1.50700 * 120.42477 * 179.78554 * 6 4 3 8 8 N 1.46900 * 109.46994 * 79.71962 * 7 6 4 9 9 C 1.46900 * 110.99503 * 180.02562 * 8 7 6 10 10 H 1.08995 * 109.47586 * 35.00637 * 9 8 7 11 11 C 1.53005 * 109.47181 * 274.99918 * 9 8 7 12 12 C 1.53002 * 109.46648 * 155.00453 * 9 8 7 13 13 C 1.50706 * 109.47153 * 294.99361 * 12 9 8 14 14 H 1.07998 * 119.99503 * 0.02562 * 13 12 9 15 15 C 1.37871 * 120.00434 * 180.02562 * 13 12 9 16 16 N 1.31516 * 119.99826 * 359.72891 * 15 13 12 17 17 Si 1.86800 * 120.00406 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47364 * 179.72558 * 17 15 13 19 19 H 1.48508 * 109.46883 * 299.72681 * 17 15 13 20 20 H 1.48497 * 109.46870 * 59.72491 * 17 15 13 21 21 C 1.38185 * 119.15765 * 359.51192 * 6 4 3 22 22 N 1.31857 * 119.61639 * 179.97438 * 2 1 3 23 23 H 1.09001 * 109.47206 * 270.02770 * 1 2 3 24 24 H 1.09005 * 109.47373 * 30.02372 * 1 2 3 25 25 H 1.09001 * 109.47563 * 150.02839 * 1 2 3 26 26 H 1.07998 * 120.41621 * 359.97438 * 3 2 1 27 27 H 1.09005 * 109.46672 * 270.23986 * 5 4 3 28 28 H 1.08989 * 109.47030 * 30.24042 * 5 4 3 29 29 H 1.08993 * 109.47025 * 150.24418 * 5 4 3 30 30 H 1.09000 * 109.46503 * 319.72471 * 7 6 4 31 31 H 1.08999 * 109.47424 * 199.72397 * 7 6 4 32 32 H 1.00892 * 110.99857 * 303.95935 * 8 7 6 33 33 H 1.09002 * 109.46592 * 180.02562 * 11 9 8 34 34 H 1.08996 * 109.46870 * 300.00309 * 11 9 8 35 35 H 1.09001 * 109.46894 * 60.00465 * 11 9 8 36 36 H 1.09004 * 109.47178 * 175.00151 * 12 9 8 37 37 H 1.08993 * 109.47411 * 54.99833 * 12 9 8 38 38 H 0.97000 * 120.00236 * 0.27947 * 16 15 13 39 39 H 1.08005 * 119.61727 * 180.25087 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2016 0.0000 4 6 3.5763 1.1905 0.0062 5 6 4.3581 2.4789 0.0126 6 6 4.2266 -0.0343 0.0014 7 6 5.7322 -0.0989 0.0030 8 7 6.2304 0.1208 1.3674 9 6 7.6978 0.0652 1.4073 10 1 8.1025 0.4844 0.4861 11 6 8.1494 -1.3900 1.5471 12 6 8.2064 0.8741 2.6022 13 6 7.8678 2.3292 2.4045 14 1 7.3421 2.6453 1.5157 15 6 8.2292 3.2569 3.3583 16 7 8.8647 2.8712 4.4432 17 14 7.8089 5.0605 3.1136 18 1 8.2973 5.8448 4.2761 19 1 8.4588 5.5564 1.8737 20 1 6.3366 5.2141 2.9962 21 6 3.4765 -1.1948 0.0010 22 7 2.1586 -1.1463 0.0005 23 1 -0.3634 0.0005 1.0277 24 1 -0.3634 0.8898 -0.5142 25 1 -0.3634 -0.8902 -0.5134 26 1 1.6508 2.1373 -0.0004 27 1 4.5475 2.7940 -1.0136 28 1 3.7853 3.2489 0.5292 29 1 5.3070 2.3256 0.5265 30 1 6.1296 0.6719 -0.6574 31 1 6.0542 -1.0794 -0.3479 32 1 5.8916 0.9953 1.7395 33 1 9.2382 -1.4311 1.5771 34 1 7.7447 -1.8090 2.4683 35 1 7.7870 -1.9662 0.6958 36 1 9.2874 0.7605 2.6843 37 1 7.7327 0.5115 3.5145 38 1 9.0827 1.9346 4.5705 39 1 3.9754 -2.1528 0.0013 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695842052.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:03 Heat of formation + Delta-G solvation = 4.092466 kcal Electronic energy + Delta-G solvation = -18024.925233 eV Core-core repulsion = 15352.111349 eV Total energy + Delta-G solvation = -2672.813884 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.33644 -36.98808 -34.43439 -33.06614 -32.53971 -30.45839 -27.98764 -27.28992 -27.04953 -24.16590 -22.97352 -22.37094 -20.35562 -19.72572 -16.85391 -16.80291 -15.78033 -15.26934 -14.96469 -14.60489 -14.26115 -13.76472 -13.38750 -13.19288 -12.97001 -12.73916 -12.59318 -12.38965 -12.22260 -12.08103 -11.98275 -11.47613 -11.37290 -11.11390 -10.87072 -10.77206 -10.50390 -10.17598 -9.64198 -9.31766 -9.25623 -8.68260 -8.58694 -8.38852 -7.77515 -6.41341 -4.11700 1.21479 1.38601 3.37754 3.39108 3.57867 3.82392 4.37745 4.48636 4.70518 4.80953 4.94496 5.08056 5.16736 5.38368 5.39712 5.44720 5.51477 5.61598 5.67303 5.69731 5.78831 5.84772 5.92436 6.03498 6.07432 6.15228 6.24554 6.25446 6.40119 6.53342 6.74200 6.78699 6.86031 7.23842 7.36748 7.84416 8.08647 8.11333 8.14933 8.37648 8.81905 9.60999 10.99180 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.021448 B = 0.006121 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.170999 B = 4573.568927 C = 5528.235662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.118 3.882 3 C -0.175 4.175 4 C -0.028 4.028 5 C -0.127 4.127 6 C -0.130 4.130 7 C 0.101 3.899 8 N -0.677 5.677 9 C 0.093 3.907 10 H 0.032 0.968 11 C -0.137 4.137 12 C 0.006 3.994 13 C -0.605 4.605 14 H 0.045 0.955 15 C 0.019 3.981 16 N -0.909 5.909 17 Si 1.063 2.937 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.287 1.287 21 C 0.119 3.881 22 N -0.493 5.493 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.131 0.869 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.036 0.964 31 H 0.074 0.926 32 H 0.356 0.644 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.039 0.961 36 H 0.013 0.987 37 H 0.017 0.983 38 H 0.270 0.730 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.769 -3.980 -10.309 16.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.019 4.019 3 C -0.195 4.195 4 C -0.037 4.037 5 C -0.184 4.184 6 C -0.132 4.132 7 C -0.029 4.029 8 N -0.313 5.313 9 C -0.016 4.016 10 H 0.050 0.950 11 C -0.195 4.195 12 C -0.031 4.031 13 C -0.643 4.643 14 H 0.063 0.937 15 C -0.186 4.186 16 N -0.544 5.544 17 Si 0.891 3.109 18 H -0.207 1.207 19 H -0.215 1.215 20 H -0.214 1.214 21 C -0.038 4.038 22 N -0.203 5.203 23 H 0.094 0.906 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.148 0.852 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.178 0.822 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.031 0.969 37 H 0.035 0.965 38 H 0.081 0.919 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.181 -3.898 -9.409 15.878 hybrid contribution 0.648 0.111 -1.119 1.298 sum -11.533 -3.787 -10.527 16.068 Atomic orbital electron populations 1.20663 0.89200 1.03021 1.02886 1.21197 0.96763 0.88459 0.95494 1.21784 0.94086 0.99140 1.04466 1.20275 0.93731 0.95554 0.94116 1.20978 1.01035 0.93619 1.02738 1.20790 0.97242 0.93464 1.01718 1.20790 0.88853 1.01154 0.92123 1.60692 1.10118 1.42590 1.17871 1.21495 0.86174 0.94528 0.99393 0.95032 1.21816 0.99657 0.96989 1.01008 1.19413 0.95705 0.94966 0.93032 1.21957 1.41701 0.92792 1.07847 0.93689 1.25763 0.94280 1.05532 0.92977 1.70768 1.37250 1.19712 1.26697 0.83627 0.76195 0.75089 0.75956 1.20687 1.21508 1.21367 1.22559 0.88891 0.97904 0.94432 1.67494 1.09915 1.29273 1.13638 0.90615 0.91021 0.90749 0.85155 0.90714 0.90828 0.89800 0.94556 0.90741 0.82193 0.93292 0.92623 0.94190 0.96895 0.96482 0.91917 0.82919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 10.17 36.00 0.37 -0.61 16 2 C 0.12 1.60 6.78 -82.59 -0.56 1.04 16 3 C -0.17 -2.32 9.45 -39.44 -0.37 -2.69 16 4 C -0.03 -0.42 5.92 -104.32 -0.62 -1.04 16 5 C -0.13 -1.79 9.34 36.01 0.34 -1.45 16 6 C -0.13 -1.99 5.41 -104.48 -0.57 -2.55 16 7 C 0.10 1.60 4.87 -4.98 -0.02 1.57 16 8 N -0.68 -12.96 6.29 -107.99 -0.68 -13.64 16 9 C 0.09 1.91 2.59 -67.71 -0.18 1.73 16 10 H 0.03 0.66 7.80 -51.93 -0.40 0.25 16 11 C -0.14 -2.40 9.42 37.16 0.35 -2.05 16 12 C 0.01 0.15 3.88 -27.88 -0.11 0.04 16 13 C -0.60 -16.30 8.12 -34.44 -0.28 -16.58 16 14 H 0.04 1.17 7.06 -52.49 -0.37 0.80 16 15 C 0.02 0.54 5.46 -17.82 -0.10 0.44 16 16 N -0.91 -27.35 13.65 55.43 0.76 -26.59 16 17 Si 1.06 24.55 29.90 -169.99 -5.08 19.46 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 21 C 0.12 1.78 10.83 -17.55 -0.19 1.59 16 22 N -0.49 -7.49 10.27 -9.47 -0.10 -7.59 16 23 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 0.95 8.10 -51.94 -0.42 0.53 16 29 H 0.08 1.39 5.00 -51.93 -0.26 1.13 16 30 H 0.04 0.58 7.31 -51.93 -0.38 0.20 16 31 H 0.07 1.08 7.31 -51.93 -0.38 0.71 16 32 H 0.36 7.47 5.51 -39.30 -0.22 7.26 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.04 0.61 7.45 -51.93 -0.39 0.23 16 36 H 0.01 0.34 8.01 -51.93 -0.42 -0.08 16 37 H 0.02 0.45 8.00 -51.93 -0.42 0.04 16 38 H 0.27 8.14 7.22 -40.82 -0.29 7.85 16 39 H 0.15 1.99 8.04 -52.48 -0.42 1.56 16 LS Contribution 317.35 15.07 4.78 4.78 Total: -1.00 -30.17 317.35 -8.38 -38.55 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -6.12 Total: 5.58 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -1.94 Total: -20.57 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: -0.02 Total: -47.81 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.08 Total: 19.46 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.17 -8.38 -38.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695842052.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.642 kcal (2) G-P(sol) polarization free energy of solvation -30.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds