Wall clock time and date at job start Mon Mar 30 2020 05:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38225 * 119.62117 * 2 1 4 4 C 1.38623 * 119.16084 * 179.70611 * 3 2 1 5 5 C 1.50710 * 120.78843 * 180.27273 * 4 3 2 6 6 C 1.38671 * 118.42506 * 0.50749 * 4 3 2 7 7 C 1.50700 * 120.42477 * 179.78554 * 6 4 3 8 8 N 1.46900 * 109.46994 * 79.71962 * 7 6 4 9 9 C 1.46900 * 110.99503 * 180.02562 * 8 7 6 10 10 H 1.08995 * 109.47586 * 35.00637 * 9 8 7 11 11 C 1.53005 * 109.47181 * 274.99918 * 9 8 7 12 12 C 1.53002 * 109.46648 * 155.00453 * 9 8 7 13 13 C 1.50706 * 109.47153 * 294.99361 * 12 9 8 14 14 H 1.07998 * 119.99503 * 0.02562 * 13 12 9 15 15 C 1.37871 * 120.00434 * 180.02562 * 13 12 9 16 16 N 1.31516 * 119.99826 * 359.72891 * 15 13 12 17 17 Si 1.86800 * 120.00406 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47364 * 179.72558 * 17 15 13 19 19 H 1.48508 * 109.46883 * 299.72681 * 17 15 13 20 20 H 1.48497 * 109.46870 * 59.72491 * 17 15 13 21 21 C 1.38185 * 119.15765 * 359.51192 * 6 4 3 22 22 N 1.31857 * 119.61639 * 179.97438 * 2 1 3 23 23 H 1.09001 * 109.47206 * 270.02770 * 1 2 3 24 24 H 1.09005 * 109.47373 * 30.02372 * 1 2 3 25 25 H 1.09001 * 109.47563 * 150.02839 * 1 2 3 26 26 H 1.07998 * 120.41621 * 359.97438 * 3 2 1 27 27 H 1.09005 * 109.46672 * 270.23986 * 5 4 3 28 28 H 1.08989 * 109.47030 * 30.24042 * 5 4 3 29 29 H 1.08993 * 109.47025 * 150.24418 * 5 4 3 30 30 H 1.09000 * 109.46503 * 319.72471 * 7 6 4 31 31 H 1.08999 * 109.47424 * 199.72397 * 7 6 4 32 32 H 1.00892 * 110.99857 * 303.95935 * 8 7 6 33 33 H 1.09002 * 109.46592 * 180.02562 * 11 9 8 34 34 H 1.08996 * 109.46870 * 300.00309 * 11 9 8 35 35 H 1.09001 * 109.46894 * 60.00465 * 11 9 8 36 36 H 1.09004 * 109.47178 * 175.00151 * 12 9 8 37 37 H 1.08993 * 109.47411 * 54.99833 * 12 9 8 38 38 H 0.97000 * 120.00236 * 0.27947 * 16 15 13 39 39 H 1.08005 * 119.61727 * 180.25087 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2016 0.0000 4 6 3.5763 1.1905 0.0062 5 6 4.3581 2.4789 0.0126 6 6 4.2266 -0.0343 0.0014 7 6 5.7322 -0.0989 0.0030 8 7 6.2304 0.1208 1.3674 9 6 7.6978 0.0652 1.4073 10 1 8.1025 0.4844 0.4861 11 6 8.1494 -1.3900 1.5471 12 6 8.2064 0.8741 2.6022 13 6 7.8678 2.3292 2.4045 14 1 7.3421 2.6453 1.5157 15 6 8.2292 3.2569 3.3583 16 7 8.8647 2.8712 4.4432 17 14 7.8089 5.0605 3.1136 18 1 8.2973 5.8448 4.2761 19 1 8.4588 5.5564 1.8737 20 1 6.3366 5.2141 2.9962 21 6 3.4765 -1.1948 0.0010 22 7 2.1586 -1.1463 0.0005 23 1 -0.3634 0.0005 1.0277 24 1 -0.3634 0.8898 -0.5142 25 1 -0.3634 -0.8902 -0.5134 26 1 1.6508 2.1373 -0.0004 27 1 4.5475 2.7940 -1.0136 28 1 3.7853 3.2489 0.5292 29 1 5.3070 2.3256 0.5265 30 1 6.1296 0.6719 -0.6574 31 1 6.0542 -1.0794 -0.3479 32 1 5.8916 0.9953 1.7395 33 1 9.2382 -1.4311 1.5771 34 1 7.7447 -1.8090 2.4683 35 1 7.7870 -1.9662 0.6958 36 1 9.2874 0.7605 2.6843 37 1 7.7327 0.5115 3.5145 38 1 9.0827 1.9346 4.5705 39 1 3.9754 -2.1528 0.0013 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695842052.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:03 Heat of formation + Delta-G solvation = -14.341912 kcal Electronic energy + Delta-G solvation = -18025.724608 eV Core-core repulsion = 15352.111349 eV Total energy + Delta-G solvation = -2673.613259 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.41563 -38.52818 -35.84689 -34.71298 -33.79686 -31.82365 -29.18828 -28.91203 -28.30954 -25.52009 -24.79067 -23.56969 -21.44684 -21.39330 -18.90793 -17.98002 -17.01480 -16.50262 -16.34268 -15.87772 -15.64642 -15.40552 -14.88327 -14.55841 -14.17831 -13.92910 -13.88041 -13.53500 -13.35986 -13.30063 -13.03576 -13.01966 -12.90763 -12.76013 -12.52250 -12.35660 -11.98229 -11.95682 -11.43115 -10.64710 -10.54558 -10.41691 -10.36037 -9.76874 -9.27191 -8.65947 -6.36618 0.14116 0.29882 1.51434 1.59391 1.77466 2.56675 2.72871 3.16487 3.38647 3.52932 3.70640 3.79288 3.98124 3.98744 4.18192 4.39167 4.41631 4.51523 4.57644 4.60027 4.64389 4.68281 4.73316 4.81106 4.90739 4.91863 5.03053 5.06858 5.16849 5.20430 5.21915 5.27591 5.42745 5.44802 5.81889 5.97892 6.19118 6.26053 6.48006 6.60201 7.04737 7.45359 8.74657 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.021448 B = 0.006121 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.170999 B = 4573.568927 C = 5528.235662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.111 3.889 3 C -0.176 4.176 4 C -0.040 4.040 5 C -0.123 4.123 6 C -0.147 4.147 7 C 0.107 3.893 8 N -0.681 5.681 9 C 0.101 3.899 10 H 0.029 0.971 11 C -0.129 4.129 12 C 0.010 3.990 13 C -0.606 4.606 14 H 0.054 0.946 15 C -0.036 4.036 16 N -0.939 5.939 17 Si 1.110 2.890 18 H -0.288 1.288 19 H -0.269 1.269 20 H -0.264 1.264 21 C 0.111 3.889 22 N -0.514 5.514 23 H 0.084 0.916 24 H 0.096 0.904 25 H 0.075 0.925 26 H 0.158 0.842 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.055 0.945 30 H 0.035 0.965 31 H 0.089 0.911 32 H 0.343 0.657 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.067 0.933 36 H -0.008 1.008 37 H -0.010 1.010 38 H 0.255 0.745 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.594 -3.353 -11.905 18.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.026 4.026 3 C -0.196 4.196 4 C -0.048 4.048 5 C -0.180 4.180 6 C -0.149 4.149 7 C -0.022 4.022 8 N -0.315 5.315 9 C -0.009 4.009 10 H 0.047 0.953 11 C -0.187 4.187 12 C -0.028 4.028 13 C -0.644 4.644 14 H 0.072 0.928 15 C -0.233 4.233 16 N -0.577 5.577 17 Si 0.931 3.069 18 H -0.214 1.214 19 H -0.195 1.195 20 H -0.189 1.189 21 C -0.046 4.046 22 N -0.224 5.224 23 H 0.102 0.898 24 H 0.115 0.885 25 H 0.094 0.906 26 H 0.176 0.824 27 H 0.109 0.891 28 H 0.104 0.896 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.107 0.893 32 H 0.163 0.837 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.010 0.990 37 H 0.009 0.991 38 H 0.064 0.936 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -14.013 -3.306 -11.034 18.140 hybrid contribution 1.161 -0.128 -0.646 1.335 sum -12.852 -3.434 -11.680 17.703 Atomic orbital electron populations 1.20767 0.86588 1.04387 1.03797 1.21847 0.98583 0.88114 0.94077 1.22090 0.93576 1.00336 1.03591 1.20486 0.94664 0.95499 0.94183 1.20942 0.99668 0.93834 1.03530 1.20755 0.96688 0.94132 1.03316 1.20774 0.89529 1.01794 0.90106 1.60732 1.08920 1.41660 1.20165 1.21340 0.87180 0.95551 0.96811 0.95343 1.21736 1.00017 0.95140 1.01825 1.19327 0.94240 0.95176 0.94034 1.22318 1.40593 0.93721 1.07760 0.92827 1.27289 0.93615 1.10001 0.92434 1.70908 1.39668 1.18755 1.28340 0.83042 0.77464 0.70088 0.76303 1.21407 1.19460 1.18901 1.22783 0.89142 0.98360 0.94275 1.67564 1.10009 1.30335 1.14502 0.89763 0.88537 0.90564 0.82430 0.89092 0.89645 0.92625 0.94655 0.89269 0.83673 0.92777 0.93351 0.91454 0.98978 0.99132 0.93564 0.81776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.63 10.17 71.23 0.72 -0.91 16 2 C 0.11 2.75 6.78 42.55 0.29 3.04 16 3 C -0.18 -4.24 9.45 22.36 0.21 -4.02 16 4 C -0.04 -1.11 5.92 -19.67 -0.12 -1.23 16 5 C -0.12 -3.26 9.34 71.24 0.67 -2.59 16 6 C -0.15 -4.32 5.41 -19.77 -0.11 -4.42 16 7 C 0.11 3.29 4.87 85.56 0.42 3.71 16 8 N -0.68 -25.86 6.29 -495.57 -3.12 -28.98 16 9 C 0.10 4.11 2.59 44.92 0.12 4.23 16 10 H 0.03 1.18 7.80 -2.39 -0.02 1.16 16 11 C -0.13 -4.43 9.42 71.98 0.68 -3.75 16 12 C 0.01 0.49 3.88 29.85 0.12 0.61 16 13 C -0.61 -33.03 8.12 25.60 0.21 -32.82 16 14 H 0.05 2.78 7.06 -2.91 -0.02 2.76 16 15 C -0.04 -2.02 5.46 84.65 0.46 -1.56 16 16 N -0.94 -57.98 13.65 21.45 0.29 -57.69 16 17 Si 1.11 48.86 29.90 68.60 2.05 50.91 16 18 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 19 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 20 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 21 C 0.11 3.18 10.83 84.67 0.92 4.10 16 22 N -0.51 -14.83 10.27 -183.88 -1.89 -16.72 16 23 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.10 1.12 8.08 -2.38 -0.02 1.10 16 25 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 27 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 28 H 0.08 2.01 8.10 -2.39 -0.02 1.99 16 29 H 0.05 1.80 5.00 -2.39 -0.01 1.79 16 30 H 0.04 1.09 7.31 -2.39 -0.02 1.08 16 31 H 0.09 2.44 7.31 -2.39 -0.02 2.42 16 32 H 0.34 14.49 5.51 -89.70 -0.49 14.00 16 33 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 34 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 1.93 7.45 -2.39 -0.02 1.92 16 36 H -0.01 -0.44 8.01 -2.39 -0.02 -0.46 16 37 H -0.01 -0.54 8.00 -2.39 -0.02 -0.56 16 38 H 0.25 16.04 7.22 -92.71 -0.67 15.37 16 39 H 0.17 4.08 8.04 -2.91 -0.02 4.05 16 Total: -1.00 -65.66 317.35 2.55 -63.11 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 0.63 Total: 24.99 kcal Atomic # 6 Polarization: -40.21 SS G_CDS: 4.58 Total: -35.63 kcal Atomic # 7 Polarization: -98.67 SS G_CDS: -4.71 Total: -103.38 kcal Atomic # 14 Polarization: 48.86 SS G_CDS: 2.05 Total: 50.91 kcal Total: -65.66 2.55 -63.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695842052.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.768 kcal (2) G-P(sol) polarization free energy of solvation -65.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds