Wall clock time and date at job start Mon Mar 30 2020 05:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38223 * 119.61170 * 2 1 4 4 C 1.38636 * 119.15509 * 180.22977 * 3 2 1 5 5 C 1.50703 * 120.78910 * 179.79718 * 4 3 2 6 6 C 1.38671 * 118.42312 * 359.51689 * 4 3 2 7 7 C 1.50697 * 120.41948 * 180.27510 * 6 4 3 8 8 N 1.46894 * 109.46992 * 80.00588 * 7 6 4 9 9 C 1.46907 * 111.00148 * 180.02562 * 8 7 6 10 10 H 1.08995 * 109.46795 * 324.99502 * 9 8 7 11 11 C 1.52999 * 109.47276 * 84.99487 * 9 8 7 12 12 C 1.52997 * 109.46984 * 204.99986 * 9 8 7 13 13 C 1.50699 * 109.47520 * 64.99675 * 12 9 8 14 14 H 1.07997 * 119.99594 * 359.97438 * 13 12 9 15 15 C 1.37875 * 119.99910 * 179.97438 * 13 12 9 16 16 N 1.31517 * 120.00236 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99820 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47077 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46887 * 119.99762 * 17 15 13 20 20 H 1.48494 * 109.47148 * 239.99745 * 17 15 13 21 21 C 1.38180 * 119.16093 * 0.25906 * 6 4 3 22 22 N 1.31845 * 119.61803 * 179.74015 * 2 1 3 23 23 H 1.08989 * 109.47036 * 270.25475 * 1 2 3 24 24 H 1.08996 * 109.46818 * 30.26299 * 1 2 3 25 25 H 1.09005 * 109.46404 * 150.25726 * 1 2 3 26 26 H 1.07994 * 120.42690 * 0.02562 * 3 2 1 27 27 H 1.09002 * 109.47152 * 269.71519 * 5 4 3 28 28 H 1.09001 * 109.46980 * 149.71620 * 5 4 3 29 29 H 1.09004 * 109.47113 * 29.71601 * 5 4 3 30 30 H 1.08999 * 109.47245 * 199.99938 * 7 6 4 31 31 H 1.08993 * 109.47248 * 320.00115 * 7 6 4 32 32 H 1.00902 * 111.00634 * 56.04191 * 8 7 6 33 33 H 1.08997 * 109.47233 * 180.02562 * 11 9 8 34 34 H 1.09001 * 109.47273 * 300.00484 * 11 9 8 35 35 H 1.09002 * 109.46600 * 60.00032 * 11 9 8 36 36 H 1.09005 * 109.46951 * 184.99717 * 12 9 8 37 37 H 1.09008 * 109.47260 * 304.99297 * 12 9 8 38 38 H 0.96999 * 119.99706 * 179.97438 * 16 15 13 39 39 H 1.08001 * 119.62114 * 179.97438 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5764 1.1907 -0.0049 5 6 4.3581 2.4791 -0.0096 6 6 4.2267 -0.0341 0.0007 7 6 5.7323 -0.0985 0.0020 8 7 6.2308 0.1264 1.3654 9 6 7.6983 0.0711 1.4052 10 1 8.0533 -0.6723 0.6916 11 6 8.2704 1.4424 1.0401 12 6 8.1561 -0.3142 2.8133 13 6 7.6958 -1.7147 3.1256 14 1 7.1326 -2.2739 2.3932 15 6 7.9936 -2.2821 4.3464 16 7 8.6799 -1.6012 5.2382 17 14 7.4224 -4.0179 4.7339 18 1 6.6751 -4.5639 3.5725 19 1 8.6017 -4.8768 5.0112 20 1 6.5369 -3.9932 5.9256 21 6 3.4767 -1.1946 0.0054 22 7 2.1587 -1.1462 0.0052 23 1 -0.3633 0.0046 1.0276 24 1 -0.3633 0.8876 -0.5179 25 1 -0.3632 -0.8924 -0.5099 26 1 1.6507 2.1373 0.0004 27 1 4.5473 2.7855 -1.0384 28 1 5.3071 2.3302 0.5055 29 1 3.7852 3.2535 0.5006 30 1 6.0543 -1.0803 -0.3451 31 1 6.1294 0.6696 -0.6614 32 1 5.8261 -0.5341 2.0120 33 1 9.3592 1.4013 1.0692 34 1 7.9442 1.7169 0.0369 35 1 7.9153 2.1858 1.7538 36 1 9.2439 -0.2688 2.8668 37 1 7.7276 0.3791 3.5371 38 1 8.8891 -2.0003 6.0971 39 1 3.9756 -2.1525 0.0094 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695842054.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:06 Heat of formation + Delta-G solvation = 7.664564 kcal Electronic energy + Delta-G solvation = -17887.451879 eV Core-core repulsion = 15214.792893 eV Total energy + Delta-G solvation = -2672.658987 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.28875 -36.82828 -34.32871 -32.94753 -32.42190 -30.50300 -27.76721 -27.46968 -27.29148 -24.26951 -22.97322 -22.27851 -20.32363 -19.45401 -16.79588 -16.35501 -15.70373 -15.26521 -14.92481 -14.61961 -14.39638 -14.03803 -13.31958 -13.16028 -12.88424 -12.64591 -12.32407 -12.24198 -12.10285 -11.95424 -11.82554 -11.58011 -11.43801 -11.23467 -10.86867 -10.65959 -10.52062 -10.25212 -9.36473 -9.25811 -9.19644 -9.08619 -8.63028 -8.40624 -7.71142 -6.04312 -4.07496 1.23597 1.42909 3.28765 3.37032 3.39979 3.85555 4.40827 4.42541 4.73533 4.85738 5.01522 5.04913 5.24126 5.35477 5.46094 5.49653 5.53273 5.63607 5.67385 5.73485 5.85259 5.91613 5.92861 6.09744 6.16338 6.24591 6.25769 6.30135 6.48578 6.61944 6.88167 6.89437 6.91063 7.47568 7.61622 7.94401 8.00292 8.14164 8.21387 8.34848 8.98683 9.57194 11.06543 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.020126 B = 0.005940 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.929848 B = 4712.902533 C = 5726.205088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.119 3.881 3 C -0.180 4.180 4 C -0.016 4.016 5 C -0.122 4.122 6 C -0.132 4.132 7 C 0.101 3.899 8 N -0.677 5.677 9 C 0.087 3.913 10 H 0.031 0.969 11 C -0.135 4.135 12 C 0.020 3.980 13 C -0.524 4.524 14 H 0.052 0.948 15 C 0.061 3.939 16 N -0.891 5.891 17 Si 0.888 3.112 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.111 3.889 22 N -0.492 5.492 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.129 0.871 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.065 0.935 30 H 0.035 0.965 31 H 0.074 0.926 32 H 0.357 0.643 33 H 0.049 0.951 34 H 0.036 0.964 35 H 0.055 0.945 36 H 0.022 0.978 37 H 0.026 0.974 38 H 0.260 0.740 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.944 6.636 -11.676 17.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.019 4.019 3 C -0.200 4.200 4 C -0.024 4.024 5 C -0.179 4.179 6 C -0.135 4.135 7 C -0.029 4.029 8 N -0.311 5.311 9 C -0.022 4.022 10 H 0.049 0.951 11 C -0.194 4.194 12 C -0.017 4.017 13 C -0.562 4.562 14 H 0.070 0.930 15 C -0.140 4.140 16 N -0.529 5.529 17 Si 0.716 3.284 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.046 4.046 22 N -0.202 5.202 23 H 0.094 0.906 24 H 0.089 0.911 25 H 0.092 0.908 26 H 0.147 0.853 27 H 0.087 0.913 28 H 0.114 0.886 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.178 0.822 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.040 0.960 37 H 0.044 0.956 38 H 0.070 0.930 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -11.352 6.528 -11.539 17.454 hybrid contribution 0.389 -1.224 0.282 1.316 sum -10.963 5.304 -11.257 16.584 Atomic orbital electron populations 1.20664 0.89280 1.02984 1.02866 1.21205 0.96752 0.88512 0.95449 1.21798 0.94270 0.98981 1.04906 1.20176 0.93287 0.95608 0.93325 1.20917 1.01697 0.93081 1.02182 1.20816 0.97328 0.93430 1.01902 1.20787 0.88762 0.99851 0.93491 1.60611 1.07822 1.57821 1.04844 1.21643 0.85950 0.94390 1.00248 0.95141 1.21807 0.99536 0.98315 0.99693 1.19282 0.96666 0.96210 0.89528 1.21195 1.35203 0.99716 1.00093 0.92977 1.24979 0.95071 0.97622 0.96368 1.69969 1.39136 1.37073 1.06770 0.86597 0.78493 0.84880 0.78405 1.19784 1.21035 1.20961 1.22671 0.89129 0.98107 0.94737 1.67493 1.09881 1.29291 1.13536 0.90629 0.91071 0.90760 0.85313 0.91342 0.88584 0.91634 0.94735 0.90748 0.82223 0.93238 0.94511 0.92624 0.96002 0.95605 0.92997 0.83000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.99 10.17 36.01 0.37 -0.63 16 2 C 0.12 1.61 6.78 -82.59 -0.56 1.05 16 3 C -0.18 -2.29 9.45 -39.44 -0.37 -2.66 16 4 C -0.02 -0.22 5.92 -104.31 -0.62 -0.83 16 5 C -0.12 -1.44 9.36 36.01 0.34 -1.11 16 6 C -0.13 -1.99 5.41 -104.48 -0.57 -2.56 16 7 C 0.10 1.56 4.78 -4.98 -0.02 1.54 16 8 N -0.68 -12.50 5.74 -108.00 -0.62 -13.12 16 9 C 0.09 1.73 2.59 -67.71 -0.18 1.56 16 10 H 0.03 0.62 7.80 -51.93 -0.41 0.22 16 11 C -0.14 -2.31 9.42 37.16 0.35 -1.96 16 12 C 0.02 0.51 4.57 -27.88 -0.13 0.38 16 13 C -0.52 -14.23 8.12 -34.44 -0.28 -14.51 16 14 H 0.05 1.38 7.49 -52.49 -0.39 0.99 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 17 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 C 0.11 1.72 10.83 -17.55 -0.19 1.53 16 22 N -0.49 -7.74 10.27 -9.47 -0.10 -7.84 16 23 H 0.08 0.70 8.14 -51.94 -0.42 0.27 16 24 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.10 1.30 6.54 -51.93 -0.34 0.96 16 29 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 30 H 0.03 0.54 7.93 -51.93 -0.41 0.13 16 31 H 0.07 1.06 6.68 -51.93 -0.35 0.72 16 32 H 0.36 7.44 7.20 -39.29 -0.28 7.16 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.04 0.54 7.45 -51.93 -0.39 0.15 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.03 0.70 8.14 -51.92 -0.42 0.27 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 39 H 0.15 2.19 8.04 -52.49 -0.42 1.77 16 LS Contribution 321.68 15.07 4.85 4.85 Total: -1.00 -29.86 321.68 -8.46 -38.31 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -6.35 Total: 3.53 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -1.96 Total: -16.57 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: 0.02 Total: -46.60 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.86 -8.46 -38.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695842054.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.976 kcal (2) G-P(sol) polarization free energy of solvation -29.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds