Wall clock time and date at job start Mon Mar 30 2020 05:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38223 * 119.61170 * 2 1 4 4 C 1.38636 * 119.15509 * 180.22977 * 3 2 1 5 5 C 1.50703 * 120.78910 * 179.79718 * 4 3 2 6 6 C 1.38671 * 118.42312 * 359.51689 * 4 3 2 7 7 C 1.50697 * 120.41948 * 180.27510 * 6 4 3 8 8 N 1.46894 * 109.46992 * 80.00588 * 7 6 4 9 9 C 1.46907 * 111.00148 * 180.02562 * 8 7 6 10 10 H 1.08995 * 109.46795 * 324.99502 * 9 8 7 11 11 C 1.52999 * 109.47276 * 84.99487 * 9 8 7 12 12 C 1.52997 * 109.46984 * 204.99986 * 9 8 7 13 13 C 1.50699 * 109.47520 * 64.99675 * 12 9 8 14 14 H 1.07997 * 119.99594 * 359.97438 * 13 12 9 15 15 C 1.37875 * 119.99910 * 179.97438 * 13 12 9 16 16 N 1.31517 * 120.00236 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99820 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47077 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46887 * 119.99762 * 17 15 13 20 20 H 1.48494 * 109.47148 * 239.99745 * 17 15 13 21 21 C 1.38180 * 119.16093 * 0.25906 * 6 4 3 22 22 N 1.31845 * 119.61803 * 179.74015 * 2 1 3 23 23 H 1.08989 * 109.47036 * 270.25475 * 1 2 3 24 24 H 1.08996 * 109.46818 * 30.26299 * 1 2 3 25 25 H 1.09005 * 109.46404 * 150.25726 * 1 2 3 26 26 H 1.07994 * 120.42690 * 0.02562 * 3 2 1 27 27 H 1.09002 * 109.47152 * 269.71519 * 5 4 3 28 28 H 1.09001 * 109.46980 * 149.71620 * 5 4 3 29 29 H 1.09004 * 109.47113 * 29.71601 * 5 4 3 30 30 H 1.08999 * 109.47245 * 199.99938 * 7 6 4 31 31 H 1.08993 * 109.47248 * 320.00115 * 7 6 4 32 32 H 1.00902 * 111.00634 * 56.04191 * 8 7 6 33 33 H 1.08997 * 109.47233 * 180.02562 * 11 9 8 34 34 H 1.09001 * 109.47273 * 300.00484 * 11 9 8 35 35 H 1.09002 * 109.46600 * 60.00032 * 11 9 8 36 36 H 1.09005 * 109.46951 * 184.99717 * 12 9 8 37 37 H 1.09008 * 109.47260 * 304.99297 * 12 9 8 38 38 H 0.96999 * 119.99706 * 179.97438 * 16 15 13 39 39 H 1.08001 * 119.62114 * 179.97438 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5764 1.1907 -0.0049 5 6 4.3581 2.4791 -0.0096 6 6 4.2267 -0.0341 0.0007 7 6 5.7323 -0.0985 0.0020 8 7 6.2308 0.1264 1.3654 9 6 7.6983 0.0711 1.4052 10 1 8.0533 -0.6723 0.6916 11 6 8.2704 1.4424 1.0401 12 6 8.1561 -0.3142 2.8133 13 6 7.6958 -1.7147 3.1256 14 1 7.1326 -2.2739 2.3932 15 6 7.9936 -2.2821 4.3464 16 7 8.6799 -1.6012 5.2382 17 14 7.4224 -4.0179 4.7339 18 1 6.6751 -4.5639 3.5725 19 1 8.6017 -4.8768 5.0112 20 1 6.5369 -3.9932 5.9256 21 6 3.4767 -1.1946 0.0054 22 7 2.1587 -1.1462 0.0052 23 1 -0.3633 0.0046 1.0276 24 1 -0.3633 0.8876 -0.5179 25 1 -0.3632 -0.8924 -0.5099 26 1 1.6507 2.1373 0.0004 27 1 4.5473 2.7855 -1.0384 28 1 5.3071 2.3302 0.5055 29 1 3.7852 3.2535 0.5006 30 1 6.0543 -1.0803 -0.3451 31 1 6.1294 0.6696 -0.6614 32 1 5.8261 -0.5341 2.0120 33 1 9.3592 1.4013 1.0692 34 1 7.9442 1.7169 0.0369 35 1 7.9153 2.1858 1.7538 36 1 9.2439 -0.2688 2.8668 37 1 7.7276 0.3791 3.5371 38 1 8.8891 -2.0003 6.0971 39 1 3.9756 -2.1525 0.0094 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695842054.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:05 Heat of formation + Delta-G solvation = -10.394337 kcal Electronic energy + Delta-G solvation = -17888.234972 eV Core-core repulsion = 15214.792893 eV Total energy + Delta-G solvation = -2673.442079 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.35471 -38.33866 -35.64950 -34.55137 -33.78567 -31.85601 -29.34016 -28.84831 -28.30283 -25.63926 -24.70626 -23.44788 -21.38486 -21.10239 -18.52773 -17.87001 -16.98380 -16.55869 -16.40152 -16.12626 -15.69585 -15.28233 -14.78764 -14.20729 -14.04639 -13.75763 -13.53244 -13.46781 -13.33873 -13.21091 -13.17818 -12.99780 -12.93489 -12.69335 -12.57705 -12.36948 -12.09579 -11.97510 -11.24896 -11.01733 -10.59431 -10.34780 -10.27867 -9.72944 -9.19292 -8.20814 -6.30469 0.16603 0.36890 1.36516 1.38428 1.49419 2.38436 2.76748 3.12026 3.41667 3.56562 3.80454 3.87359 4.00731 4.13145 4.32086 4.45542 4.59203 4.64274 4.66190 4.71417 4.74184 4.77079 4.80529 4.87070 4.97695 5.05291 5.14795 5.21361 5.24716 5.33891 5.38728 5.50176 5.53909 5.58187 5.84427 5.87562 6.20152 6.39016 6.56550 6.85256 7.07795 7.38356 8.90894 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.020126 B = 0.005940 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.929848 B = 4712.902533 C = 5726.205088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.108 3.892 3 C -0.178 4.178 4 C -0.022 4.022 5 C -0.118 4.118 6 C -0.147 4.147 7 C 0.108 3.892 8 N -0.674 5.674 9 C 0.095 3.905 10 H 0.027 0.973 11 C -0.127 4.127 12 C 0.027 3.973 13 C -0.532 4.532 14 H 0.056 0.944 15 C 0.006 3.994 16 N -0.929 5.929 17 Si 0.955 3.045 18 H -0.265 1.265 19 H -0.279 1.279 20 H -0.281 1.281 21 C 0.093 3.907 22 N -0.519 5.519 23 H 0.083 0.917 24 H 0.099 0.901 25 H 0.071 0.929 26 H 0.161 0.839 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.031 0.969 31 H 0.091 0.909 32 H 0.340 0.660 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.050 0.950 36 H -0.004 1.004 37 H -0.003 1.003 38 H 0.262 0.738 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.479 7.345 -12.953 19.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.030 4.030 3 C -0.198 4.198 4 C -0.031 4.031 5 C -0.175 4.175 6 C -0.150 4.150 7 C -0.021 4.021 8 N -0.307 5.307 9 C -0.014 4.014 10 H 0.045 0.955 11 C -0.185 4.185 12 C -0.010 4.010 13 C -0.570 4.570 14 H 0.074 0.926 15 C -0.192 4.192 16 N -0.569 5.569 17 Si 0.781 3.219 18 H -0.189 1.189 19 H -0.205 1.205 20 H -0.207 1.207 21 C -0.063 4.063 22 N -0.229 5.229 23 H 0.101 0.899 24 H 0.117 0.883 25 H 0.090 0.910 26 H 0.179 0.821 27 H 0.107 0.893 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.049 0.951 31 H 0.109 0.891 32 H 0.159 0.841 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.015 0.985 37 H 0.015 0.985 38 H 0.071 0.929 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.887 7.243 -12.841 19.581 hybrid contribution 0.814 -1.400 0.657 1.747 sum -12.073 5.844 -12.184 18.121 Atomic orbital electron populations 1.20765 0.86767 1.04307 1.03706 1.21872 0.98541 0.88295 0.94284 1.22153 0.93974 1.00036 1.03623 1.20510 0.94151 0.95829 0.92571 1.20921 1.00666 0.92467 1.03407 1.20769 0.96785 0.94075 1.03348 1.20767 0.89409 1.00174 0.91759 1.60647 1.06539 1.57143 1.06321 1.21456 0.87137 0.96098 0.96707 0.95527 1.21710 0.99542 0.96052 1.01163 1.19141 0.94810 0.94905 0.92148 1.21552 1.34625 1.00646 1.00168 0.92601 1.25832 0.95254 1.01718 0.96388 1.70091 1.40565 1.38989 1.07298 0.85543 0.78097 0.79996 0.78277 1.18887 1.20500 1.20706 1.22750 0.89570 0.98450 0.95559 1.67516 1.09944 1.30779 1.14707 0.89887 0.88265 0.90959 0.82111 0.89326 0.90405 0.90046 0.95127 0.89064 0.84124 0.92974 0.91581 0.93057 0.98536 0.98459 0.92869 0.83229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.69 10.17 71.24 0.72 -0.97 16 2 C 0.11 2.72 6.78 42.56 0.29 3.01 16 3 C -0.18 -4.06 9.45 22.36 0.21 -3.85 16 4 C -0.02 -0.57 5.92 -19.66 -0.12 -0.69 16 5 C -0.12 -2.46 9.36 71.24 0.67 -1.79 16 6 C -0.15 -4.32 5.41 -19.78 -0.11 -4.43 16 7 C 0.11 3.26 4.78 85.56 0.41 3.67 16 8 N -0.67 -24.80 5.74 -495.60 -2.84 -27.65 16 9 C 0.10 3.81 2.59 44.91 0.12 3.93 16 10 H 0.03 1.08 7.80 -2.39 -0.02 1.06 16 11 C -0.13 -4.17 9.42 71.98 0.68 -3.49 16 12 C 0.03 1.41 4.57 29.85 0.14 1.54 16 13 C -0.53 -29.40 8.12 25.60 0.21 -29.20 16 14 H 0.06 2.98 7.49 -2.91 -0.02 2.96 16 15 C 0.01 0.36 5.46 84.65 0.46 0.82 16 16 N -0.93 -56.22 13.29 21.45 0.28 -55.93 16 17 Si 0.96 44.52 29.54 68.60 2.03 46.55 16 18 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 21 C 0.09 2.89 10.83 84.67 0.92 3.81 16 22 N -0.52 -16.04 10.27 -183.88 -1.89 -17.93 16 23 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.10 1.13 8.08 -2.39 -0.02 1.12 16 25 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 26 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 27 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.08 1.94 6.54 -2.39 -0.02 1.92 16 29 H 0.08 1.43 8.10 -2.38 -0.02 1.41 16 30 H 0.03 0.94 7.93 -2.39 -0.02 0.93 16 31 H 0.09 2.42 6.68 -2.39 -0.02 2.40 16 32 H 0.34 14.42 7.20 -89.69 -0.65 13.77 16 33 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.07 1.78 7.45 -2.39 -0.02 1.76 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 37 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 38 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 39 H 0.15 4.45 8.04 -2.91 -0.02 4.43 16 Total: -1.00 -65.07 321.68 2.55 -62.52 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.37 Total: 20.05 kcal Atomic # 6 Polarization: -32.21 SS G_CDS: 4.59 Total: -27.62 kcal Atomic # 7 Polarization: -97.06 SS G_CDS: -4.45 Total: -101.51 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -65.07 2.55 -62.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695842054.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.127 kcal (2) G-P(sol) polarization free energy of solvation -65.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds