Wall clock time and date at job start Mon Mar 30 2020 06:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46955 * 2 1 4 4 H 1.08993 * 109.46999 * 175.57748 * 3 2 1 5 5 C 1.50696 * 109.47144 * 55.57303 * 3 2 1 6 6 H 1.07998 * 119.99883 * 245.83776 * 5 3 2 7 7 C 1.37877 * 119.99788 * 65.84858 * 5 3 2 8 8 N 1.31505 * 120.00289 * 5.56236 * 7 5 3 9 9 Si 1.86804 * 119.99757 * 185.57049 * 7 5 3 10 10 H 1.48494 * 109.47054 * 179.97438 * 9 7 5 11 11 H 1.48505 * 109.47118 * 299.99559 * 9 7 5 12 12 H 1.48496 * 109.47466 * 59.99396 * 9 7 5 13 13 N 1.46905 * 109.46956 * 295.57188 * 3 2 1 14 14 C 1.46892 * 110.99833 * 180.69520 * 13 3 2 15 15 C 1.46900 * 111.00152 * 304.65442 * 13 3 2 16 16 C 1.50694 * 109.47181 * 174.93619 * 15 13 3 17 17 C 1.38675 * 120.78972 * 90.00007 * 16 15 13 18 18 C 1.38177 * 119.16546 * 179.97438 * 17 16 15 19 19 N 1.31882 * 120.76535 * 0.02562 * 18 17 16 20 20 C 1.31856 * 121.72826 * 359.97438 * 19 18 17 21 21 C 1.50699 * 119.62197 * 180.02562 * 20 19 18 22 22 C 1.38226 * 120.76143 * 359.74243 * 20 19 18 23 23 H 1.09002 * 109.46901 * 184.94593 * 1 2 3 24 24 H 1.08996 * 109.47164 * 304.94403 * 1 2 3 25 25 H 1.09002 * 109.46961 * 64.94686 * 1 2 3 26 26 H 1.09000 * 109.47024 * 239.99481 * 2 1 3 27 27 H 1.08997 * 109.46866 * 119.99637 * 2 1 3 28 28 H 0.97002 * 120.00454 * 355.17860 * 8 7 5 29 29 H 1.09006 * 109.47399 * 60.00837 * 14 13 3 30 30 H 1.09002 * 109.47167 * 179.97438 * 14 13 3 31 31 H 1.08992 * 109.47983 * 300.00197 * 14 13 3 32 32 H 1.09001 * 109.46738 * 294.93917 * 15 13 3 33 33 H 1.09004 * 109.47245 * 54.93647 * 15 13 3 34 34 H 1.08008 * 120.41574 * 359.95103 * 17 16 15 35 35 H 1.07997 * 119.61975 * 179.97438 * 18 17 16 36 36 H 1.09003 * 109.47261 * 89.99954 * 21 20 19 37 37 H 1.08999 * 109.47128 * 210.00048 * 21 20 19 38 38 H 1.09000 * 109.46971 * 329.99746 * 21 20 19 39 39 H 1.07999 * 120.42164 * 180.26246 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1270 1.4435 0.0792 5 6 1.4501 2.1838 1.1719 6 1 0.7634 3.0003 1.0041 7 6 1.7873 1.8198 2.4583 8 7 2.7051 0.9004 2.6624 9 14 0.9401 2.6326 3.9114 10 1 1.4770 2.0690 5.1759 11 1 1.1906 4.0959 3.8753 12 1 -0.5211 2.3787 3.8379 13 7 1.6395 2.1034 -1.2494 14 6 2.1271 3.4884 -1.2919 15 6 2.1046 1.3453 -2.4185 16 6 1.5713 1.9831 -3.6754 17 6 2.2897 2.9731 -4.3289 18 6 1.7693 3.5346 -5.4792 19 7 0.6046 3.1398 -5.9554 20 6 -0.1057 2.2014 -5.3606 21 6 -1.4305 1.7862 -5.9465 22 6 0.3537 1.5901 -4.2091 23 1 -0.3633 -1.0239 0.0886 24 1 -0.3633 0.5886 0.8424 25 1 -0.3633 0.4352 -0.9310 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.0947 0.4285 1.9098 29 1 3.2153 3.4927 -1.2276 30 1 1.8171 3.9542 -2.2274 31 1 1.7114 4.0460 -0.4528 32 1 3.1943 1.3485 -2.4435 33 1 1.7457 0.3182 -2.3519 34 1 3.2437 3.3013 -3.9434 35 1 2.3223 4.3064 -5.9938 36 1 -1.2760 0.9697 -6.6519 37 1 -2.0935 1.4552 -5.1472 38 1 -1.8804 2.6334 -6.4642 39 1 -0.2306 0.8192 -3.7289 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703118872.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:21 Heat of formation + Delta-G solvation = 12.259931 kcal Electronic energy + Delta-G solvation = -18434.167193 eV Core-core repulsion = 15761.707477 eV Total energy + Delta-G solvation = -2672.459717 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.33057 -39.23394 -35.78858 -33.79616 -33.35493 -32.74558 -28.96544 -28.35451 -27.80326 -25.97920 -24.52113 -23.61232 -22.05089 -20.82624 -18.74225 -17.63667 -17.19864 -16.74775 -16.37122 -16.09459 -15.62073 -15.32882 -15.19563 -14.65221 -14.18241 -13.93836 -13.82951 -13.48151 -13.34297 -13.17294 -12.97059 -12.87468 -12.65159 -12.59524 -12.31831 -11.97044 -11.95159 -11.68605 -11.52899 -10.69954 -10.48350 -10.41571 -10.35720 -9.82169 -9.07180 -8.51135 -6.22786 0.19116 0.28183 1.55146 1.61628 1.80385 2.57986 2.77703 3.25344 3.33178 3.45201 3.63405 3.83222 4.16689 4.19459 4.27063 4.36298 4.44532 4.47277 4.54973 4.60813 4.68003 4.72778 4.75208 4.81105 4.88194 5.02125 5.06404 5.14167 5.21081 5.22058 5.32619 5.43583 5.44909 5.70843 5.81089 5.94673 6.06812 6.41837 6.51867 6.76003 7.04475 7.53413 8.84880 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.032685 B = 0.005553 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.445310 B = 5041.201016 C = 5227.688232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.113 4.113 3 C 0.208 3.792 4 H -0.045 1.045 5 C -0.574 4.574 6 H 0.047 0.953 7 C -0.025 4.025 8 N -0.940 5.940 9 Si 1.107 2.893 10 H -0.288 1.288 11 H -0.276 1.276 12 H -0.272 1.272 13 N -0.522 5.522 14 C 0.043 3.957 15 C 0.085 3.915 16 C -0.030 4.030 17 C -0.180 4.180 18 C 0.098 3.902 19 N -0.510 5.510 20 C 0.115 3.885 21 C -0.099 4.099 22 C -0.161 4.161 23 H 0.043 0.957 24 H 0.039 0.961 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.036 0.964 28 H 0.259 0.741 29 H 0.007 0.993 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.031 0.969 33 H 0.089 0.911 34 H 0.139 0.861 35 H 0.180 0.820 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.414 1.508 -14.663 15.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.151 4.151 3 C 0.101 3.899 4 H -0.028 1.028 5 C -0.613 4.613 6 H 0.065 0.935 7 C -0.224 4.224 8 N -0.579 5.579 9 Si 0.930 3.070 10 H -0.214 1.214 11 H -0.202 1.202 12 H -0.198 1.198 13 N -0.246 5.246 14 C -0.106 4.106 15 C -0.042 4.042 16 C -0.038 4.038 17 C -0.201 4.201 18 C -0.058 4.058 19 N -0.221 5.221 20 C -0.022 4.022 21 C -0.157 4.157 22 C -0.181 4.181 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.026 0.974 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.107 0.893 34 H 0.156 0.844 35 H 0.197 0.803 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.268 1.971 -13.775 14.879 hybrid contribution 1.804 -0.541 -0.484 1.945 sum -3.464 1.430 -14.259 14.743 Atomic orbital electron populations 1.21350 0.94735 0.99206 1.01536 1.21608 0.97813 0.96946 0.98758 1.19278 0.90800 0.92303 0.87537 1.02791 1.21975 1.29101 1.18184 0.92008 0.93487 1.26910 0.95522 0.96981 1.02956 1.70909 1.26019 1.25890 1.35084 0.83041 0.75612 0.75398 0.72921 1.21387 1.20152 1.19774 1.62021 1.59289 1.02126 1.01186 1.22195 0.96278 0.90528 1.01556 1.21159 0.96744 0.98378 0.87950 1.20270 0.94434 0.94706 0.94393 1.22193 1.02111 0.98107 0.97669 1.23060 0.91640 0.98054 0.93091 1.67553 1.07544 1.13665 1.33331 1.21731 0.97199 0.91477 0.91816 1.20762 0.90549 1.02566 1.01785 1.21983 0.96431 1.02450 0.97285 0.93777 0.94154 0.92619 0.93331 0.94500 0.93024 0.97444 0.91048 0.92587 0.95116 0.89285 0.84365 0.80273 0.89163 0.89499 0.90416 0.84161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.53 9.53 71.98 0.69 -3.85 16 2 C -0.11 -5.04 5.03 30.59 0.15 -4.88 16 3 C 0.21 10.10 1.39 44.17 0.06 10.16 16 4 H -0.05 -2.49 7.64 -2.39 -0.02 -2.51 16 5 C -0.57 -30.79 6.17 25.60 0.16 -30.63 16 6 H 0.05 2.57 6.97 -2.91 -0.02 2.55 16 7 C -0.03 -1.40 5.28 84.66 0.45 -0.95 16 8 N -0.94 -55.72 13.20 21.45 0.28 -55.44 16 9 Si 1.11 49.65 29.91 68.60 2.05 51.70 16 10 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 11 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 12 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 13 N -0.52 -21.36 4.17 -906.07 -3.78 -25.14 16 14 C 0.04 1.67 8.88 127.69 1.13 2.80 16 15 C 0.09 2.90 4.84 85.56 0.41 3.31 16 16 C -0.03 -0.88 4.75 -19.67 -0.09 -0.97 16 17 C -0.18 -4.75 7.96 22.36 0.18 -4.57 16 18 C 0.10 2.38 11.18 84.67 0.95 3.33 16 19 N -0.51 -13.81 10.27 -183.89 -1.89 -15.70 16 20 C 0.11 2.95 6.78 42.55 0.29 3.23 16 21 C -0.10 -1.82 10.17 71.24 0.72 -1.10 16 22 C -0.16 -4.43 9.45 22.36 0.21 -4.22 16 23 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.04 1.85 6.90 -2.39 -0.02 1.83 16 25 H 0.05 2.11 7.88 -2.39 -0.02 2.09 16 26 H 0.05 1.91 5.98 -2.39 -0.01 1.89 16 27 H 0.04 1.84 6.19 -2.39 -0.01 1.82 16 28 H 0.26 15.46 5.64 -92.71 -0.52 14.94 16 29 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 30 H 0.07 2.42 5.81 -2.39 -0.01 2.41 16 31 H 0.06 2.40 6.62 -2.39 -0.02 2.38 16 32 H 0.03 1.06 8.10 -2.39 -0.02 1.04 16 33 H 0.09 2.97 5.80 -2.38 -0.01 2.96 16 34 H 0.14 3.30 8.05 -2.91 -0.02 3.27 16 35 H 0.18 3.17 8.06 -2.91 -0.02 3.14 16 36 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.09 1.38 8.08 -2.39 -0.02 1.36 16 38 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -63.00 308.65 3.24 -59.76 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 1.26 Total: 13.15 kcal Atomic # 6 Polarization: -33.64 SS G_CDS: 5.31 Total: -28.33 kcal Atomic # 7 Polarization: -90.89 SS G_CDS: -5.39 Total: -96.28 kcal Atomic # 14 Polarization: 49.65 SS G_CDS: 2.05 Total: 51.70 kcal Total: -63.00 3.24 -59.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703118872.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.018 kcal (2) G-P(sol) polarization free energy of solvation -62.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds