Wall clock time and date at job start Mon Mar 30 2020 06:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47195 * 2 1 4 4 H 1.08995 * 109.47314 * 54.98534 * 3 2 1 5 5 C 1.50705 * 109.46896 * 174.98182 * 3 2 1 6 6 H 1.08004 * 119.99917 * 119.99904 * 5 3 2 7 7 C 1.37875 * 119.99958 * 299.99673 * 5 3 2 8 8 N 1.31509 * 120.00145 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99860 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47217 * 89.99914 * 9 7 5 11 11 H 1.48500 * 109.47051 * 210.00297 * 9 7 5 12 12 H 1.48503 * 109.46933 * 330.00184 * 9 7 5 13 13 N 1.46897 * 109.47161 * 294.98046 * 3 2 1 14 14 C 1.46897 * 111.00125 * 167.17821 * 13 3 2 15 15 C 1.46903 * 111.00022 * 291.13036 * 13 3 2 16 16 C 1.50705 * 109.47067 * 163.92752 * 15 13 3 17 17 C 1.38674 * 120.78416 * 90.00282 * 16 15 13 18 18 C 1.38183 * 119.15705 * 179.97438 * 17 16 15 19 19 N 1.31881 * 120.76687 * 359.97438 * 18 17 16 20 20 C 1.31849 * 121.72795 * 0.02562 * 19 18 17 21 21 C 1.50708 * 119.61927 * 179.97438 * 20 19 18 22 22 C 1.38229 * 120.76450 * 359.97438 * 20 19 18 23 23 H 1.08996 * 109.46852 * 175.18268 * 1 2 3 24 24 H 1.08996 * 109.47341 * 295.18993 * 1 2 3 25 25 H 1.08998 * 109.46678 * 55.18892 * 1 2 3 26 26 H 1.09000 * 109.47481 * 239.99508 * 2 1 3 27 27 H 1.09008 * 109.47086 * 119.99715 * 2 1 3 28 28 H 0.97005 * 120.00122 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.47171 * 183.95854 * 14 13 3 30 30 H 1.09000 * 109.46701 * 303.95181 * 14 13 3 31 31 H 1.08999 * 109.47618 * 63.95332 * 14 13 3 32 32 H 1.08997 * 109.46917 * 43.93158 * 15 13 3 33 33 H 1.08997 * 109.47092 * 283.92945 * 15 13 3 34 34 H 1.07999 * 120.42268 * 359.95147 * 17 16 15 35 35 H 1.08000 * 119.61492 * 180.02562 * 18 17 16 36 36 H 1.09007 * 109.46647 * 89.99680 * 21 20 19 37 37 H 1.08998 * 109.46740 * 209.99165 * 21 20 19 38 38 H 1.08996 * 109.46995 * 329.99864 * 21 20 19 39 39 H 1.08001 * 120.41978 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9816 0.8416 5 6 3.5419 1.4442 0.1243 6 1 4.1475 1.8887 -0.6518 7 6 4.1429 0.8785 1.2287 8 7 3.4056 0.3369 2.1734 9 14 6.0046 0.8813 1.3831 10 1 6.4411 2.1143 2.0861 11 1 6.4389 -0.3097 2.1564 12 1 6.6136 0.8415 0.0292 13 7 1.6518 2.0991 -1.2554 14 6 1.8503 3.5523 -1.1728 15 6 2.3850 1.5316 -2.3949 16 6 1.7024 1.9277 -3.6789 17 6 2.0544 3.0953 -4.3389 18 6 1.4071 3.4258 -5.5141 19 7 0.4657 2.6453 -6.0082 20 6 0.1054 1.5281 -5.4079 21 6 -0.9766 0.6722 -6.0143 22 6 0.7086 1.1329 -4.2286 23 1 -0.3633 -1.0240 -0.0863 24 1 -0.3634 0.4374 0.9299 25 1 -0.3632 0.5867 -0.8438 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 3.8284 -0.0609 2.9506 29 1 1.4899 4.0209 -2.0885 30 1 1.2968 3.9466 -0.3206 31 1 2.9115 3.7676 -1.0478 32 1 2.4006 0.4449 -2.3120 33 1 3.4068 1.9108 -2.3947 34 1 2.8245 3.7385 -3.9393 35 1 1.6757 4.3332 -6.0345 36 1 -0.5286 -0.0506 -6.6963 37 1 -1.5083 0.1439 -5.2229 38 1 -1.6754 1.3041 -6.5624 39 1 0.4088 0.2168 -3.7413 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703118873.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:24 Heat of formation + Delta-G solvation = 27.390673 kcal Electronic energy + Delta-G solvation = -18441.600054 eV Core-core repulsion = 15769.796455 eV Total energy + Delta-G solvation = -2671.803598 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.03142 -37.34028 -33.66628 -32.48392 -31.94715 -31.10143 -27.59608 -26.84238 -26.60440 -24.11166 -22.81792 -21.93624 -20.60896 -18.99224 -16.66479 -16.15775 -15.80285 -15.32578 -14.88044 -14.40343 -14.04272 -13.83471 -13.54167 -13.07755 -12.73636 -12.32103 -12.28799 -12.26128 -11.82954 -11.53202 -11.47458 -11.23356 -10.95535 -10.91447 -10.80454 -10.58228 -10.12305 -9.68234 -9.55204 -9.29002 -9.19341 -9.06368 -8.66189 -8.40919 -7.23816 -6.05059 -4.18905 1.38946 1.59099 3.22308 3.30188 3.32286 4.02466 4.34252 4.50731 4.93182 5.00967 5.18899 5.31513 5.41944 5.43107 5.64637 5.67582 5.71693 5.90821 6.03624 6.08661 6.18490 6.30237 6.36741 6.41852 6.47474 6.54686 6.64170 6.64875 6.80120 7.00188 7.07836 7.13792 7.29720 7.52428 7.69954 7.88832 8.06920 8.22616 8.23307 8.38882 8.90373 9.49229 10.94448 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.027666 B = 0.006160 C = 0.005563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.826879 B = 4544.480968 C = 5032.439380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.110 4.110 3 C 0.213 3.787 4 H 0.040 0.960 5 C -0.547 4.547 6 H 0.056 0.944 7 C 0.070 3.930 8 N -0.884 5.884 9 Si 0.887 3.113 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.530 5.530 14 C 0.032 3.968 15 C 0.095 3.905 16 C -0.012 4.012 17 C -0.176 4.176 18 C 0.095 3.905 19 N -0.498 5.498 20 C 0.117 3.883 21 C -0.100 4.100 22 C -0.154 4.154 23 H 0.025 0.975 24 H 0.038 0.962 25 H 0.049 0.951 26 H 0.031 0.969 27 H 0.093 0.907 28 H 0.262 0.738 29 H 0.046 0.954 30 H 0.056 0.944 31 H 0.027 0.973 32 H 0.086 0.914 33 H 0.048 0.952 34 H 0.128 0.872 35 H 0.149 0.851 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.637 1.748 -10.802 11.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 C 0.107 3.893 4 H 0.058 0.942 5 C -0.586 4.586 6 H 0.074 0.926 7 C -0.133 4.133 8 N -0.522 5.522 9 Si 0.715 3.285 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.254 5.254 14 C -0.117 4.117 15 C -0.033 4.033 16 C -0.020 4.020 17 C -0.197 4.197 18 C -0.062 4.062 19 N -0.209 5.209 20 C -0.020 4.020 21 C -0.158 4.158 22 C -0.174 4.174 23 H 0.045 0.955 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.111 0.889 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.046 0.954 32 H 0.104 0.896 33 H 0.066 0.934 34 H 0.146 0.854 35 H 0.166 0.834 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.541 1.791 -11.440 12.837 hybrid contribution 2.486 0.008 1.212 2.766 sum -3.055 1.800 -10.227 10.825 Atomic orbital electron populations 1.21726 0.98822 0.98574 1.00616 1.21602 0.92300 0.99098 1.01862 1.19336 0.93223 0.91356 0.85383 0.94178 1.21735 0.92697 1.38429 1.05702 0.92563 1.24901 0.97853 0.94919 0.95633 1.69868 1.34860 1.38088 1.09373 0.86682 0.86106 0.77614 0.78123 1.20710 1.21119 1.20034 1.62442 1.55320 1.03020 1.04619 1.22223 0.99454 0.89927 1.00077 1.20966 0.94600 1.00980 0.86713 1.20650 0.93332 0.92626 0.95440 1.22063 1.02385 0.98087 0.97133 1.22560 0.92118 0.98085 0.93436 1.67424 1.14608 1.04980 1.33865 1.21212 0.96186 0.92399 0.92223 1.20663 0.95925 0.98225 1.00951 1.21853 0.97423 1.01645 0.96522 0.95540 0.94305 0.93164 0.94987 0.88885 0.92812 0.93562 0.92555 0.95444 0.89605 0.93407 0.85360 0.83389 0.90850 0.90795 0.90909 0.84984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.86 37.16 0.37 -2.40 16 2 C -0.11 -2.51 5.22 -26.73 -0.14 -2.65 16 3 C 0.21 5.05 1.69 -68.86 -0.12 4.93 16 4 H 0.04 1.07 7.96 -51.93 -0.41 0.65 16 5 C -0.55 -14.05 7.28 -34.44 -0.25 -14.30 16 6 H 0.06 1.45 6.00 -52.48 -0.31 1.13 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.19 11.29 55.43 0.63 -23.56 16 9 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 13 N -0.53 -10.78 4.01 -237.73 -0.95 -11.74 16 14 C 0.03 0.61 9.06 60.06 0.54 1.15 16 15 C 0.10 1.79 4.20 -4.97 -0.02 1.77 16 16 C -0.01 -0.20 5.07 -104.32 -0.53 -0.73 16 17 C -0.18 -2.62 8.32 -39.44 -0.33 -2.95 16 18 C 0.09 1.33 11.18 -17.55 -0.20 1.14 16 19 N -0.50 -7.64 10.27 -9.47 -0.10 -7.73 16 20 C 0.12 1.71 6.78 -82.58 -0.56 1.15 16 21 C -0.10 -1.10 10.17 36.01 0.37 -0.74 16 22 C -0.15 -2.38 9.45 -39.44 -0.37 -2.75 16 23 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.96 7.62 -51.93 -0.40 0.57 16 26 H 0.03 0.71 6.24 -51.93 -0.32 0.38 16 27 H 0.09 2.39 5.95 -51.92 -0.31 2.08 16 28 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.05 0.78 6.34 -51.93 -0.33 0.45 16 30 H 0.06 1.06 8.03 -51.93 -0.42 0.64 16 31 H 0.03 0.54 7.41 -51.93 -0.38 0.15 16 32 H 0.09 1.69 6.00 -51.93 -0.31 1.38 16 33 H 0.05 0.95 6.57 -51.93 -0.34 0.61 16 34 H 0.13 1.75 7.99 -52.49 -0.42 1.33 16 35 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 311.19 15.07 4.69 4.69 Total: -1.00 -27.62 311.19 -8.14 -35.76 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -6.05 Total: 1.64 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -1.33 Total: -14.63 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: -0.42 Total: -43.03 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.62 -8.14 -35.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703118873.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.152 kcal (2) G-P(sol) polarization free energy of solvation -27.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds