Wall clock time and date at job start Mon Mar 30 2020 06:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47195 * 2 1 4 4 H 1.08995 * 109.47314 * 54.98534 * 3 2 1 5 5 C 1.50705 * 109.46896 * 174.98182 * 3 2 1 6 6 H 1.08004 * 119.99917 * 119.99904 * 5 3 2 7 7 C 1.37875 * 119.99958 * 299.99673 * 5 3 2 8 8 N 1.31509 * 120.00145 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99860 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47217 * 89.99914 * 9 7 5 11 11 H 1.48500 * 109.47051 * 210.00297 * 9 7 5 12 12 H 1.48503 * 109.46933 * 330.00184 * 9 7 5 13 13 N 1.46897 * 109.47161 * 294.98046 * 3 2 1 14 14 C 1.46897 * 111.00125 * 167.17821 * 13 3 2 15 15 C 1.46903 * 111.00022 * 291.13036 * 13 3 2 16 16 C 1.50705 * 109.47067 * 163.92752 * 15 13 3 17 17 C 1.38674 * 120.78416 * 90.00282 * 16 15 13 18 18 C 1.38183 * 119.15705 * 179.97438 * 17 16 15 19 19 N 1.31881 * 120.76687 * 359.97438 * 18 17 16 20 20 C 1.31849 * 121.72795 * 0.02562 * 19 18 17 21 21 C 1.50708 * 119.61927 * 179.97438 * 20 19 18 22 22 C 1.38229 * 120.76450 * 359.97438 * 20 19 18 23 23 H 1.08996 * 109.46852 * 175.18268 * 1 2 3 24 24 H 1.08996 * 109.47341 * 295.18993 * 1 2 3 25 25 H 1.08998 * 109.46678 * 55.18892 * 1 2 3 26 26 H 1.09000 * 109.47481 * 239.99508 * 2 1 3 27 27 H 1.09008 * 109.47086 * 119.99715 * 2 1 3 28 28 H 0.97005 * 120.00122 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.47171 * 183.95854 * 14 13 3 30 30 H 1.09000 * 109.46701 * 303.95181 * 14 13 3 31 31 H 1.08999 * 109.47618 * 63.95332 * 14 13 3 32 32 H 1.08997 * 109.46917 * 43.93158 * 15 13 3 33 33 H 1.08997 * 109.47092 * 283.92945 * 15 13 3 34 34 H 1.07999 * 120.42268 * 359.95147 * 17 16 15 35 35 H 1.08000 * 119.61492 * 180.02562 * 18 17 16 36 36 H 1.09007 * 109.46647 * 89.99680 * 21 20 19 37 37 H 1.08998 * 109.46740 * 209.99165 * 21 20 19 38 38 H 1.08996 * 109.46995 * 329.99864 * 21 20 19 39 39 H 1.08001 * 120.41978 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9816 0.8416 5 6 3.5419 1.4442 0.1243 6 1 4.1475 1.8887 -0.6518 7 6 4.1429 0.8785 1.2287 8 7 3.4056 0.3369 2.1734 9 14 6.0046 0.8813 1.3831 10 1 6.4411 2.1143 2.0861 11 1 6.4389 -0.3097 2.1564 12 1 6.6136 0.8415 0.0292 13 7 1.6518 2.0991 -1.2554 14 6 1.8503 3.5523 -1.1728 15 6 2.3850 1.5316 -2.3949 16 6 1.7024 1.9277 -3.6789 17 6 2.0544 3.0953 -4.3389 18 6 1.4071 3.4258 -5.5141 19 7 0.4657 2.6453 -6.0082 20 6 0.1054 1.5281 -5.4079 21 6 -0.9766 0.6722 -6.0143 22 6 0.7086 1.1329 -4.2286 23 1 -0.3633 -1.0240 -0.0863 24 1 -0.3634 0.4374 0.9299 25 1 -0.3632 0.5867 -0.8438 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8901 28 1 3.8284 -0.0609 2.9506 29 1 1.4899 4.0209 -2.0885 30 1 1.2968 3.9466 -0.3206 31 1 2.9115 3.7676 -1.0478 32 1 2.4006 0.4449 -2.3120 33 1 3.4068 1.9108 -2.3947 34 1 2.8245 3.7385 -3.9393 35 1 1.6757 4.3332 -6.0345 36 1 -0.5286 -0.0506 -6.6963 37 1 -1.5083 0.1439 -5.2229 38 1 -1.6754 1.3041 -6.5624 39 1 0.4088 0.2168 -3.7413 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703118873.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:24 Heat of formation + Delta-G solvation = 12.039407 kcal Electronic energy + Delta-G solvation = -18442.265735 eV Core-core repulsion = 15769.796455 eV Total energy + Delta-G solvation = -2672.469279 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.20742 -38.99792 -35.28162 -33.82082 -33.36468 -32.76288 -28.77392 -28.64783 -27.93746 -25.85098 -24.15424 -23.43603 -21.96046 -20.76119 -18.44623 -17.42581 -17.22463 -16.80818 -16.34244 -15.84574 -15.61924 -15.16776 -15.09426 -14.54218 -14.11260 -13.93299 -13.58282 -13.27537 -13.19354 -13.10979 -12.90507 -12.79810 -12.72962 -12.65013 -12.41346 -12.16412 -11.94881 -11.53942 -11.30570 -11.03485 -10.57008 -10.36223 -10.32066 -9.75927 -8.97989 -8.04308 -6.26596 0.26986 0.38127 1.36722 1.39661 1.47284 2.39509 2.86653 3.15222 3.49413 3.53339 3.80329 3.99087 4.28150 4.28619 4.43354 4.49445 4.64935 4.69517 4.74496 4.77118 4.84696 4.85928 4.92137 4.94408 4.99862 5.08060 5.21111 5.24780 5.27777 5.43394 5.48656 5.58382 5.61658 5.78930 5.89140 6.04733 6.14889 6.36708 6.59730 6.93159 7.11003 7.44638 8.91306 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.027666 B = 0.006160 C = 0.005563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.826879 B = 4544.480968 C = 5032.439380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.105 4.105 3 C 0.219 3.781 4 H 0.006 0.994 5 C -0.553 4.553 6 H 0.052 0.948 7 C 0.024 3.976 8 N -0.909 5.909 9 Si 0.944 3.056 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.272 1.272 13 N -0.528 5.528 14 C 0.036 3.964 15 C 0.106 3.894 16 C -0.027 4.027 17 C -0.181 4.181 18 C 0.097 3.903 19 N -0.512 5.512 20 C 0.114 3.886 21 C -0.099 4.099 22 C -0.163 4.163 23 H 0.047 0.953 24 H 0.030 0.970 25 H 0.056 0.944 26 H 0.033 0.967 27 H 0.063 0.937 28 H 0.262 0.738 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.015 0.985 32 H 0.073 0.927 33 H 0.033 0.967 34 H 0.138 0.862 35 H 0.180 0.820 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.980 2.022 -12.501 13.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.143 4.143 3 C 0.112 3.888 4 H 0.024 0.976 5 C -0.592 4.592 6 H 0.070 0.930 7 C -0.176 4.176 8 N -0.549 5.549 9 Si 0.771 3.229 10 H -0.205 1.205 11 H -0.209 1.209 12 H -0.197 1.197 13 N -0.251 5.251 14 C -0.112 4.112 15 C -0.022 4.022 16 C -0.036 4.036 17 C -0.201 4.201 18 C -0.059 4.059 19 N -0.223 5.223 20 C -0.023 4.023 21 C -0.156 4.156 22 C -0.184 4.184 23 H 0.066 0.934 24 H 0.049 0.951 25 H 0.075 0.925 26 H 0.052 0.948 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.034 0.966 32 H 0.091 0.909 33 H 0.051 0.949 34 H 0.156 0.844 35 H 0.197 0.803 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.888 2.071 -13.154 14.560 hybrid contribution 2.571 -0.046 1.685 3.074 sum -3.317 2.025 -11.469 12.110 Atomic orbital electron populations 1.21583 0.96374 1.00053 1.00469 1.21439 0.94442 0.98053 1.00388 1.19107 0.91999 0.91762 0.85914 0.97622 1.21985 0.93913 1.37874 1.05457 0.92979 1.25574 1.01597 0.94883 0.95552 1.69993 1.36255 1.38839 1.09768 0.85776 0.81631 0.77492 0.78043 1.20515 1.20915 1.19660 1.62387 1.55344 1.03670 1.03725 1.22218 0.98746 0.89129 1.01130 1.20797 0.94035 0.99981 0.87368 1.20467 0.94340 0.94010 0.94755 1.22183 1.02757 0.97675 0.97509 1.23044 0.91162 0.98722 0.92971 1.67539 1.15111 1.05437 1.34212 1.21708 0.96439 0.92437 0.91750 1.20752 0.95115 0.98137 1.01570 1.21964 0.97426 1.01849 0.97117 0.93354 0.95060 0.92457 0.94803 0.91875 0.92909 0.91186 0.92943 0.96592 0.90882 0.94851 0.84406 0.80344 0.89397 0.89492 0.90367 0.84487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.95 9.86 71.98 0.71 -4.24 16 2 C -0.10 -4.83 5.22 30.59 0.16 -4.67 16 3 C 0.22 10.59 1.69 44.17 0.07 10.66 16 4 H 0.01 0.32 7.96 -2.39 -0.02 0.30 16 5 C -0.55 -28.89 7.28 25.60 0.19 -28.70 16 6 H 0.05 2.71 6.00 -2.91 -0.02 2.70 16 7 C 0.02 1.29 5.29 84.65 0.45 1.74 16 8 N -0.91 -50.76 11.29 21.45 0.24 -50.52 16 9 Si 0.94 42.55 29.54 68.60 2.03 44.57 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 13 N -0.53 -21.46 4.01 -906.06 -3.63 -25.09 16 14 C 0.04 1.36 9.06 127.69 1.16 2.52 16 15 C 0.11 3.97 4.20 85.56 0.36 4.33 16 16 C -0.03 -0.87 5.07 -19.67 -0.10 -0.97 16 17 C -0.18 -5.04 8.32 22.36 0.19 -4.86 16 18 C 0.10 2.48 11.18 84.67 0.95 3.43 16 19 N -0.51 -14.41 10.27 -183.88 -1.89 -16.30 16 20 C 0.11 3.06 6.78 42.56 0.29 3.34 16 21 C -0.10 -1.90 10.17 71.24 0.72 -1.18 16 22 C -0.16 -4.77 9.45 22.36 0.21 -4.56 16 23 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.06 2.13 7.62 -2.39 -0.02 2.11 16 26 H 0.03 1.51 6.24 -2.39 -0.01 1.49 16 27 H 0.06 3.31 5.95 -2.38 -0.01 3.30 16 28 H 0.26 13.98 8.31 -92.70 -0.77 13.21 16 29 H 0.07 2.27 6.34 -2.39 -0.02 2.25 16 30 H 0.05 1.97 8.03 -2.39 -0.02 1.95 16 31 H 0.02 0.62 7.41 -2.39 -0.02 0.60 16 32 H 0.07 2.89 6.00 -2.39 -0.01 2.88 16 33 H 0.03 1.33 6.57 -2.39 -0.02 1.32 16 34 H 0.14 3.51 7.99 -2.91 -0.02 3.48 16 35 H 0.18 3.33 8.06 -2.91 -0.02 3.30 16 36 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.09 1.45 8.08 -2.39 -0.02 1.43 16 38 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -58.76 311.19 3.12 -55.65 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 1.02 Total: 14.84 kcal Atomic # 6 Polarization: -28.51 SS G_CDS: 5.35 Total: -23.15 kcal Atomic # 7 Polarization: -86.63 SS G_CDS: -5.28 Total: -91.91 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -58.76 3.12 -55.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703118873.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.685 kcal (2) G-P(sol) polarization free energy of solvation -58.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds