Wall clock time and date at job start Mon Mar 30 2020 06:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52996 * 109.46982 * 2 1 4 4 H 1.08999 * 109.47489 * 305.00316 * 3 2 1 5 5 C 1.50701 * 109.47208 * 185.00119 * 3 2 1 6 6 H 1.08000 * 120.00021 * 240.00752 * 5 3 2 7 7 C 1.37872 * 119.99997 * 59.99785 * 5 3 2 8 8 N 1.31516 * 120.00085 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00192 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47090 * 59.99958 * 9 7 5 11 11 H 1.48495 * 109.47045 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46833 * 300.00226 * 9 7 5 13 13 N 1.46507 * 109.47246 * 65.00227 * 3 2 1 14 14 C 1.46501 * 119.99980 * 64.91859 * 13 3 2 15 15 C 1.53001 * 109.46969 * 270.00226 * 14 13 3 16 16 N 1.46897 * 109.46860 * 180.02562 * 15 14 13 17 17 C 1.39674 * 119.99879 * 244.92164 * 13 3 2 18 18 C 1.38908 * 120.07365 * 354.30451 * 17 13 3 19 19 C 1.38109 * 119.92428 * 180.02562 * 18 17 13 20 20 C 1.38285 * 120.07183 * 0.02562 * 19 18 17 21 21 C 1.38284 * 120.15207 * 0.27243 * 20 19 18 22 22 C 1.38108 * 120.07407 * 359.45152 * 21 20 19 23 23 H 1.09000 * 109.46726 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46650 * 300.00023 * 1 2 3 25 25 H 1.08996 * 109.47149 * 59.99661 * 1 2 3 26 26 H 1.08999 * 109.46650 * 239.99977 * 2 1 3 27 27 H 1.09004 * 109.46998 * 120.00044 * 2 1 3 28 28 H 0.97004 * 120.00535 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.46708 * 30.00212 * 14 13 3 30 30 H 1.08996 * 109.47095 * 150.00190 * 14 13 3 31 31 H 1.09006 * 109.46967 * 300.00079 * 15 14 13 32 32 H 1.08996 * 109.47241 * 60.00054 * 15 14 13 33 33 H 1.00900 * 110.99984 * 179.97438 * 16 15 14 34 34 H 1.00903 * 111.00342 * 303.94997 * 16 15 14 35 35 H 1.07998 * 120.03999 * 0.04794 * 18 17 13 36 36 H 1.07996 * 119.96203 * 179.97438 * 19 18 17 37 37 H 1.08001 * 119.92012 * 180.02562 * 20 19 18 38 38 H 1.07996 * 119.96405 * 179.70509 * 21 20 19 39 39 H 1.07992 * 120.04077 * 180.27745 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5420 1.4443 -0.1239 6 1 4.1473 1.8888 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3375 -2.1733 9 14 6.0051 0.8801 -1.3812 10 1 6.5968 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6504 12 1 6.5005 2.2800 -1.3808 13 7 1.6525 2.0975 1.2519 14 6 2.2002 1.6250 2.5259 15 6 1.2843 0.5453 3.1056 16 7 1.8332 0.0720 4.3834 17 6 0.7608 3.1723 1.2307 18 6 0.3324 3.6976 0.0182 19 6 -0.5489 4.7608 0.0009 20 6 -1.0044 5.3027 1.1888 21 6 -0.5752 4.7861 2.3976 22 6 0.3017 3.7194 2.4222 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 3.8293 -0.0610 -2.9500 29 1 3.1942 1.2088 2.3619 30 1 2.2663 2.4590 3.2245 31 1 0.2903 0.9616 3.2695 32 1 1.2183 -0.2887 2.4070 33 1 1.2456 -0.6420 4.7870 34 1 2.7794 -0.2596 4.2699 35 1 0.6878 3.2749 -0.9098 36 1 -0.8821 5.1699 -0.9414 37 1 -1.6939 6.1338 1.1724 38 1 -0.9291 5.2147 3.3236 39 1 0.6330 3.3135 3.3665 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707387597.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:44 Heat of formation + Delta-G solvation = 29.226378 kcal Electronic energy + Delta-G solvation = -18857.523444 eV Core-core repulsion = 16185.799447 eV Total energy + Delta-G solvation = -2671.723996 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.10514 -36.66974 -34.29453 -32.85143 -31.41309 -30.28331 -29.01266 -27.56774 -25.64702 -23.23590 -22.15979 -21.63742 -20.47847 -19.11800 -17.25402 -16.38716 -15.75313 -15.19781 -14.86197 -14.33106 -14.06629 -13.75139 -13.47503 -13.10485 -13.05783 -12.56391 -12.35477 -12.29611 -11.62715 -11.59536 -11.32127 -10.99888 -10.90110 -10.76515 -10.60690 -10.33421 -10.06104 -10.00603 -9.73604 -9.35373 -8.80628 -8.50994 -8.33926 -8.28690 -6.41928 -6.09979 -4.22858 2.07880 2.30588 3.22995 3.28423 3.30986 4.03012 4.34110 4.56313 5.01815 5.15095 5.49968 5.50209 5.56797 5.69550 5.79839 6.05734 6.09787 6.13914 6.20431 6.21808 6.31392 6.43674 6.46233 6.61250 6.61886 6.86197 6.92731 7.03953 7.11925 7.19788 7.24008 7.31591 7.44391 7.59374 7.61196 7.67389 7.83634 8.10422 8.34098 8.61557 8.85228 9.44118 10.89015 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.018077 B = 0.008360 C = 0.007052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.529841 B = 3348.585990 C = 3969.647887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.132 4.132 3 C 0.272 3.728 4 H 0.053 0.947 5 C -0.527 4.527 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.888 5.888 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.599 5.599 14 C 0.131 3.869 15 C 0.034 3.966 16 N -0.852 5.852 17 C 0.239 3.761 18 C -0.200 4.200 19 C -0.075 4.075 20 C -0.206 4.206 21 C -0.076 4.076 22 C -0.218 4.218 23 H 0.030 0.970 24 H 0.040 0.960 25 H 0.043 0.957 26 H 0.100 0.900 27 H 0.038 0.962 28 H 0.264 0.736 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.336 0.664 34 H 0.339 0.661 35 H 0.127 0.873 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.430 1.699 6.826 8.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.171 4.171 3 C 0.172 3.828 4 H 0.071 0.929 5 C -0.565 4.565 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.526 5.526 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.304 5.304 14 C 0.006 3.994 15 C -0.097 4.097 16 N -0.381 5.381 17 C 0.132 3.868 18 C -0.222 4.222 19 C -0.094 4.094 20 C -0.227 4.227 21 C -0.095 4.095 22 C -0.241 4.241 23 H 0.049 0.951 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.118 0.882 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.145 0.855 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.351 2.168 6.857 8.964 hybrid contribution 1.055 -1.014 -0.622 1.590 sum -4.296 1.154 6.235 7.659 Atomic orbital electron populations 1.21806 0.98970 0.98971 1.00467 1.22058 0.92128 1.00290 1.02582 1.18914 0.94260 0.88972 0.80685 0.92943 1.21371 0.91348 1.37978 1.05845 0.92223 1.24886 0.98351 0.94958 0.95487 1.69849 1.35122 1.38190 1.09474 0.86586 0.85312 0.78364 0.77350 1.20289 1.21195 1.20199 1.47147 1.44753 1.31242 1.07266 1.21107 0.97041 0.96129 0.85148 1.22572 0.99007 0.98692 0.89444 1.58698 1.07013 1.44866 1.27540 1.17994 0.88283 0.87172 0.93369 1.20902 1.03544 1.00474 0.97301 1.20797 0.95973 0.95248 0.97391 1.20651 1.05774 1.03548 0.92739 1.20710 0.96304 0.95381 0.97118 1.20661 1.04931 1.01870 0.96645 0.95086 0.94132 0.93766 0.88206 0.94379 0.92607 0.90148 0.91777 0.91675 0.93785 0.85242 0.84926 0.85492 0.87194 0.87690 0.87422 0.86606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.42 37.16 0.35 -2.48 16 2 C -0.13 -2.93 4.77 -26.73 -0.13 -3.05 16 3 C 0.27 6.35 1.97 -69.08 -0.14 6.21 16 4 H 0.05 1.34 5.31 -51.93 -0.28 1.07 16 5 C -0.53 -13.53 7.96 -34.44 -0.27 -13.81 16 6 H 0.06 1.55 6.99 -52.49 -0.37 1.18 16 7 C 0.07 1.71 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -23.79 11.29 55.43 0.63 -23.17 16 9 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 N -0.60 -12.25 1.98 -165.50 -0.33 -12.58 16 14 C 0.13 2.39 4.75 -4.04 -0.02 2.37 16 15 C 0.03 0.55 6.23 -3.83 -0.02 0.53 16 16 N -0.85 -11.50 9.62 -10.37 -0.10 -11.60 16 17 C 0.24 4.72 6.54 -83.79 -0.55 4.17 16 18 C -0.20 -3.92 9.31 -39.38 -0.37 -4.29 16 19 C -0.08 -1.28 10.04 -39.61 -0.40 -1.68 16 20 C -0.21 -3.27 10.04 -39.55 -0.40 -3.67 16 21 C -0.08 -1.22 10.04 -39.61 -0.40 -1.62 16 22 C -0.22 -3.86 9.10 -39.38 -0.36 -4.22 16 23 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.04 0.77 7.07 -51.93 -0.37 0.41 16 25 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.10 2.50 5.95 -51.93 -0.31 2.19 16 27 H 0.04 0.82 5.57 -51.93 -0.29 0.53 16 28 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.08 1.58 6.65 -51.93 -0.35 1.24 16 30 H 0.06 1.14 6.45 -51.93 -0.34 0.80 16 31 H 0.06 1.08 8.00 -51.93 -0.42 0.67 16 32 H 0.04 0.77 4.90 -51.93 -0.25 0.51 16 33 H 0.34 3.86 9.08 -39.29 -0.36 3.50 16 34 H 0.34 4.32 8.99 -39.29 -0.35 3.97 16 35 H 0.13 2.67 5.74 -52.49 -0.30 2.37 16 36 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 37 H 0.10 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.12 1.95 6.19 -52.49 -0.32 1.63 16 LS Contribution 304.88 15.07 4.59 4.59 Total: -1.00 -26.28 304.88 -8.56 -34.84 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -5.54 Total: 12.36 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: -2.79 Total: -19.91 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: 0.20 Total: -47.34 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -26.28 -8.56 -34.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707387597.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.066 kcal (2) G-P(sol) polarization free energy of solvation -26.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds