Wall clock time and date at job start Mon Mar 30 2020 06:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52996 * 109.46982 * 2 1 4 4 H 1.08999 * 109.47489 * 305.00316 * 3 2 1 5 5 C 1.50701 * 109.47208 * 185.00119 * 3 2 1 6 6 H 1.08000 * 120.00021 * 240.00752 * 5 3 2 7 7 C 1.37872 * 119.99997 * 59.99785 * 5 3 2 8 8 N 1.31516 * 120.00085 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00192 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47090 * 59.99958 * 9 7 5 11 11 H 1.48495 * 109.47045 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46833 * 300.00226 * 9 7 5 13 13 N 1.46507 * 109.47246 * 65.00227 * 3 2 1 14 14 C 1.46501 * 119.99980 * 64.91859 * 13 3 2 15 15 C 1.53001 * 109.46969 * 270.00226 * 14 13 3 16 16 N 1.46897 * 109.46860 * 180.02562 * 15 14 13 17 17 C 1.39674 * 119.99879 * 244.92164 * 13 3 2 18 18 C 1.38908 * 120.07365 * 354.30451 * 17 13 3 19 19 C 1.38109 * 119.92428 * 180.02562 * 18 17 13 20 20 C 1.38285 * 120.07183 * 0.02562 * 19 18 17 21 21 C 1.38284 * 120.15207 * 0.27243 * 20 19 18 22 22 C 1.38108 * 120.07407 * 359.45152 * 21 20 19 23 23 H 1.09000 * 109.46726 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46650 * 300.00023 * 1 2 3 25 25 H 1.08996 * 109.47149 * 59.99661 * 1 2 3 26 26 H 1.08999 * 109.46650 * 239.99977 * 2 1 3 27 27 H 1.09004 * 109.46998 * 120.00044 * 2 1 3 28 28 H 0.97004 * 120.00535 * 180.02562 * 8 7 5 29 29 H 1.08999 * 109.46708 * 30.00212 * 14 13 3 30 30 H 1.08996 * 109.47095 * 150.00190 * 14 13 3 31 31 H 1.09006 * 109.46967 * 300.00079 * 15 14 13 32 32 H 1.08996 * 109.47241 * 60.00054 * 15 14 13 33 33 H 1.00900 * 110.99984 * 179.97438 * 16 15 14 34 34 H 1.00903 * 111.00342 * 303.94997 * 16 15 14 35 35 H 1.07998 * 120.03999 * 0.04794 * 18 17 13 36 36 H 1.07996 * 119.96203 * 179.97438 * 19 18 17 37 37 H 1.08001 * 119.92012 * 180.02562 * 20 19 18 38 38 H 1.07996 * 119.96405 * 179.70509 * 21 20 19 39 39 H 1.07992 * 120.04077 * 180.27745 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5420 1.4443 -0.1239 6 1 4.1473 1.8888 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3375 -2.1733 9 14 6.0051 0.8801 -1.3812 10 1 6.5968 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6504 12 1 6.5005 2.2800 -1.3808 13 7 1.6525 2.0975 1.2519 14 6 2.2002 1.6250 2.5259 15 6 1.2843 0.5453 3.1056 16 7 1.8332 0.0720 4.3834 17 6 0.7608 3.1723 1.2307 18 6 0.3324 3.6976 0.0182 19 6 -0.5489 4.7608 0.0009 20 6 -1.0044 5.3027 1.1888 21 6 -0.5752 4.7861 2.3976 22 6 0.3017 3.7194 2.4222 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 3.8293 -0.0610 -2.9500 29 1 3.1942 1.2088 2.3619 30 1 2.2663 2.4590 3.2245 31 1 0.2903 0.9616 3.2695 32 1 1.2183 -0.2887 2.4070 33 1 1.2456 -0.6420 4.7870 34 1 2.7794 -0.2596 4.2699 35 1 0.6878 3.2749 -0.9098 36 1 -0.8821 5.1699 -0.9414 37 1 -1.6939 6.1338 1.1724 38 1 -0.9291 5.2147 3.3236 39 1 0.6330 3.3135 3.3665 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707387597.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:44 Heat of formation + Delta-G solvation = 14.650230 kcal Electronic energy + Delta-G solvation = -18858.155513 eV Core-core repulsion = 16185.799447 eV Total energy + Delta-G solvation = -2672.356065 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.56834 -38.15419 -35.78436 -34.46960 -33.17976 -31.65057 -30.44424 -29.21568 -27.24767 -24.98369 -23.55591 -23.07104 -21.96883 -20.75811 -18.83620 -18.18220 -17.14795 -16.71558 -16.34509 -15.91565 -15.39872 -15.25661 -14.98246 -14.62453 -14.60534 -13.99425 -13.88902 -13.77959 -13.28434 -13.15150 -13.03023 -12.74602 -12.59913 -12.25717 -12.09405 -11.98940 -11.76503 -11.60991 -11.43620 -11.06782 -10.48824 -10.35121 -9.66737 -9.56157 -8.21218 -7.80996 -6.27995 0.71025 0.94001 1.39288 1.40709 1.47720 2.35238 2.60167 3.12217 3.19132 3.83546 4.09751 4.17345 4.29286 4.32020 4.47017 4.50167 4.57568 4.67050 4.72383 4.79103 4.84588 4.87827 5.03302 5.10790 5.19235 5.23878 5.33976 5.41247 5.57840 5.63058 5.70868 5.82125 5.91073 5.95104 6.15833 6.21182 6.30237 6.56599 6.60721 6.94646 7.05635 7.43140 8.88384 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.018077 B = 0.008360 C = 0.007052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.529841 B = 3348.585990 C = 3969.647887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.122 4.122 3 C 0.281 3.719 4 H 0.024 0.976 5 C -0.539 4.539 6 H 0.050 0.950 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.952 3.048 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.278 1.278 13 N -0.608 5.608 14 C 0.135 3.865 15 C 0.051 3.949 16 N -0.847 5.847 17 C 0.214 3.786 18 C -0.227 4.227 19 C -0.078 4.078 20 C -0.198 4.198 21 C -0.073 4.073 22 C -0.220 4.220 23 H 0.049 0.951 24 H 0.045 0.955 25 H 0.033 0.967 26 H 0.069 0.931 27 H 0.040 0.960 28 H 0.264 0.736 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.030 0.970 33 H 0.351 0.649 34 H 0.344 0.656 35 H 0.099 0.901 36 H 0.130 0.870 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.321 2.591 8.556 10.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.161 4.161 3 C 0.179 3.821 4 H 0.041 0.959 5 C -0.578 4.578 6 H 0.069 0.931 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.778 3.222 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.204 1.204 13 N -0.314 5.314 14 C 0.011 3.989 15 C -0.081 4.081 16 N -0.378 5.378 17 C 0.109 3.891 18 C -0.249 4.249 19 C -0.097 4.097 20 C -0.219 4.219 21 C -0.091 4.091 22 C -0.243 4.243 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.088 0.912 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.048 0.952 33 H 0.164 0.836 34 H 0.157 0.843 35 H 0.117 0.883 36 H 0.148 0.852 37 H 0.157 0.843 38 H 0.161 0.839 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.259 3.067 8.615 11.081 hybrid contribution 1.269 -1.185 -1.128 2.070 sum -4.990 1.882 7.487 9.192 Atomic orbital electron populations 1.21640 0.96915 1.00068 1.00140 1.21852 0.93865 0.99245 1.01101 1.18545 0.92780 0.89371 0.81379 0.95878 1.21640 0.92833 1.37673 1.05631 0.93138 1.25560 1.02064 0.94823 0.95310 1.69973 1.36442 1.38801 1.09779 0.85702 0.80892 0.78099 0.77477 1.19554 1.20836 1.20392 1.46937 1.45759 1.31968 1.06768 1.21097 0.96489 0.96858 0.84480 1.22270 0.98386 0.97394 0.90062 1.58642 1.07583 1.45688 1.25860 1.18239 0.89014 0.87503 0.94310 1.20874 1.05473 1.02204 0.96397 1.21075 0.95071 0.94286 0.99224 1.21068 1.05176 1.03661 0.91954 1.21142 0.94959 0.94257 0.98754 1.20824 1.05158 1.02336 0.95971 0.93159 0.93611 0.94815 0.91225 0.94120 0.92721 0.92108 0.91145 0.91762 0.95230 0.83592 0.84321 0.88305 0.85228 0.84309 0.83940 0.85838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.14 9.42 71.99 0.68 -4.47 16 2 C -0.12 -5.57 4.77 30.60 0.15 -5.42 16 3 C 0.28 13.65 1.97 44.24 0.09 13.74 16 4 H 0.02 1.27 5.31 -2.39 -0.01 1.26 16 5 C -0.54 -28.63 7.96 25.60 0.20 -28.43 16 6 H 0.05 2.71 6.99 -2.91 -0.02 2.69 16 7 C 0.02 1.19 5.29 84.65 0.45 1.64 16 8 N -0.91 -50.38 11.29 21.45 0.24 -50.14 16 9 Si 0.95 42.68 29.54 68.60 2.03 44.71 16 10 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 13 N -0.61 -25.37 1.98 -677.52 -1.34 -26.71 16 14 C 0.14 4.95 4.75 86.38 0.41 5.36 16 15 C 0.05 1.60 6.23 86.30 0.54 2.13 16 16 N -0.85 -21.42 9.62 -186.72 -1.80 -23.21 16 17 C 0.21 8.49 6.54 38.21 0.25 8.74 16 18 C -0.23 -9.07 9.31 22.40 0.21 -8.86 16 19 C -0.08 -2.54 10.04 22.25 0.22 -2.32 16 20 C -0.20 -5.60 10.04 22.29 0.22 -5.38 16 21 C -0.07 -2.07 10.04 22.25 0.22 -1.84 16 22 C -0.22 -7.39 9.10 22.40 0.20 -7.19 16 23 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.04 1.74 7.07 -2.39 -0.02 1.72 16 25 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.07 3.62 5.95 -2.39 -0.01 3.61 16 27 H 0.04 1.80 5.57 -2.39 -0.01 1.79 16 28 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 29 H 0.06 2.44 6.65 -2.39 -0.02 2.42 16 30 H 0.07 2.46 6.45 -2.39 -0.02 2.44 16 31 H 0.06 2.04 8.00 -2.38 -0.02 2.02 16 32 H 0.03 1.02 4.90 -2.39 -0.01 1.00 16 33 H 0.35 7.29 9.08 -89.69 -0.81 6.47 16 34 H 0.34 8.31 8.99 -89.69 -0.81 7.50 16 35 H 0.10 4.45 5.74 -2.91 -0.02 4.44 16 36 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16 37 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 38 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 39 H 0.12 3.90 6.19 -2.91 -0.02 3.88 16 Total: -1.00 -57.44 304.88 2.42 -55.02 By element: Atomic # 1 Polarization: 33.17 SS G_CDS: -0.55 Total: 32.62 kcal Atomic # 6 Polarization: -36.13 SS G_CDS: 3.84 Total: -32.29 kcal Atomic # 7 Polarization: -97.17 SS G_CDS: -2.90 Total: -100.06 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -57.44 2.42 -55.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707387597.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.674 kcal (2) G-P(sol) polarization free energy of solvation -57.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds