Wall clock time and date at job start Mon Mar 30 2020 05:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38878 * 120.74797 * 2 1 4 4 C 1.38029 * 119.33281 * 180.02562 * 3 2 1 5 5 C 1.50695 * 119.57101 * 179.97438 * 4 3 2 6 6 N 1.31970 * 120.85339 * 359.71954 * 4 3 2 7 7 C 1.32398 * 121.62317 * 0.56789 * 6 4 3 8 8 N 1.38998 * 119.70686 * 179.71375 * 7 6 4 9 9 C 1.46501 * 120.00174 * 0.38361 * 8 7 6 10 10 C 1.50704 * 109.47043 * 270.00521 * 9 8 7 11 11 H 1.08002 * 120.00031 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99771 * 179.97438 * 10 9 8 13 13 N 1.31509 * 119.99933 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99889 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47100 * 59.99676 * 14 12 10 16 16 H 1.48498 * 109.47251 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47029 * 299.99694 * 14 12 10 18 18 C 1.46506 * 119.99892 * 180.38685 * 8 7 6 19 19 C 1.53003 * 109.46849 * 125.87216 * 18 8 7 20 20 C 1.52997 * 109.47188 * 245.87274 * 18 8 7 21 21 C 1.38305 * 120.74669 * 180.02562 * 2 1 3 22 22 H 1.08998 * 109.46851 * 269.97770 * 1 2 3 23 23 H 1.09002 * 109.46775 * 29.98387 * 1 2 3 24 24 H 1.08999 * 109.46717 * 149.98203 * 1 2 3 25 25 H 1.08001 * 120.33408 * 359.97438 * 3 2 1 26 26 H 1.09008 * 109.47171 * 90.00235 * 5 4 3 27 27 H 1.09004 * 109.46932 * 209.99431 * 5 4 3 28 28 H 1.09000 * 109.47733 * 330.00139 * 5 4 3 29 29 H 1.09000 * 109.47044 * 30.00166 * 9 8 7 30 30 H 1.08997 * 109.47119 * 150.00284 * 9 8 7 31 31 H 0.96998 * 119.99897 * 180.02562 * 13 12 10 32 32 H 1.09004 * 109.47336 * 5.87507 * 18 8 7 33 33 H 1.09003 * 109.46984 * 175.37980 * 19 18 8 34 34 H 1.09002 * 109.47439 * 295.38106 * 19 18 8 35 35 H 1.09003 * 109.47238 * 55.38045 * 19 18 8 36 36 H 1.09004 * 109.46974 * 304.82248 * 20 18 8 37 37 H 1.08998 * 109.46928 * 64.81862 * 20 18 8 38 38 H 1.08999 * 109.47139 * 184.82579 * 20 18 8 39 39 H 1.07997 * 120.44825 * 359.96533 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2171 1.1935 0.0000 4 6 3.5969 1.1595 -0.0005 5 6 4.3728 2.4514 -0.0011 6 7 4.2455 0.0102 0.0045 7 6 3.6050 -1.1485 -0.0009 8 7 4.3282 -2.3355 -0.0013 9 6 5.7928 -2.3009 0.0127 10 6 6.3084 -2.2802 -1.4032 11 1 5.6146 -2.2921 -2.2308 12 6 7.6659 -2.2461 -1.6421 13 7 8.5107 -2.2311 -0.6343 14 14 8.3050 -2.2198 -3.3971 15 1 7.7876 -1.0150 -4.0943 16 1 9.7895 -2.1849 -3.3829 17 1 7.8460 -3.4393 -4.1094 18 6 3.6260 -3.6212 -0.0159 19 6 4.1345 -4.4668 -1.1853 20 6 3.8864 -4.3595 1.2986 21 6 2.2141 -1.1886 -0.0005 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3633 0.8902 -0.5136 24 1 -0.3633 -0.8898 -0.5141 25 1 1.6948 2.1389 -0.0004 26 1 4.5603 2.7631 1.0265 27 1 5.3226 2.3045 -0.5152 28 1 3.7967 3.2210 -0.5149 29 1 6.1300 -1.4058 0.5353 30 1 6.1722 -3.1852 0.5247 31 1 9.4657 -2.2068 -0.8023 32 1 2.5557 -3.4494 -0.1303 33 1 3.6725 -5.4534 -1.1481 34 1 3.8759 -3.9796 -2.1255 35 1 5.2174 -4.5698 -1.1153 36 1 4.9610 -4.4557 1.4545 37 1 3.4484 -3.7979 2.1236 38 1 3.4356 -5.3509 1.2539 39 1 1.6937 -2.1350 -0.0004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707973153.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:26 Heat of formation + Delta-G solvation = 13.107660 kcal Electronic energy + Delta-G solvation = -18532.801945 eV Core-core repulsion = 15860.378989 eV Total energy + Delta-G solvation = -2672.422956 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.19500 -38.53206 -35.04026 -34.71588 -33.75790 -31.50399 -29.53811 -28.26652 -27.98685 -27.57118 -24.73639 -23.62689 -21.48437 -20.49745 -18.54645 -18.06444 -17.47283 -16.56488 -16.39358 -15.69280 -15.18561 -15.12526 -14.69442 -14.26739 -14.03508 -13.99634 -13.60835 -13.32787 -13.28537 -13.17878 -13.09524 -12.96954 -12.83576 -12.70057 -12.53037 -12.26197 -12.17880 -12.07594 -11.57074 -11.42457 -10.57181 -10.46892 -10.11216 -9.94374 -8.38906 -7.96269 -6.24598 0.53506 0.76432 1.34515 1.37377 1.44851 2.29774 2.45697 3.13316 3.14910 3.65636 3.93764 3.99053 4.23682 4.27562 4.30196 4.52004 4.54489 4.68525 4.79523 4.80449 4.82410 4.82641 4.90282 4.93322 5.00801 5.01252 5.09615 5.16212 5.29085 5.31126 5.37244 5.45530 5.54826 5.65972 5.73813 6.02671 6.18104 6.42919 6.73852 6.90987 7.41483 7.65950 8.92370 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.018465 B = 0.008127 C = 0.006444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.053081 B = 3444.564362 C = 4343.801049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.005 4.005 3 C -0.253 4.253 4 C 0.151 3.849 5 C -0.097 4.097 6 N -0.582 5.582 7 C 0.395 3.605 8 N -0.599 5.599 9 C 0.282 3.718 10 C -0.513 4.513 11 H 0.043 0.957 12 C 0.008 3.992 13 N -0.931 5.931 14 Si 0.955 3.045 15 H -0.280 1.280 16 H -0.279 1.279 17 H -0.267 1.267 18 C 0.140 3.860 19 C -0.149 4.149 20 C -0.153 4.153 21 C -0.273 4.273 22 H 0.088 0.912 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.154 0.846 26 H 0.084 0.916 27 H 0.050 0.950 28 H 0.102 0.898 29 H 0.002 0.998 30 H 0.008 0.992 31 H 0.263 0.737 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.038 0.962 35 H 0.044 0.956 36 H 0.036 0.964 37 H 0.053 0.947 38 H 0.094 0.906 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.222 2.192 1.695 16.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.013 4.013 3 C -0.276 4.276 4 C 0.012 3.988 5 C -0.155 4.155 6 N -0.301 5.301 7 C 0.160 3.840 8 N -0.309 5.309 9 C 0.161 3.839 10 C -0.552 4.552 11 H 0.062 0.938 12 C -0.189 4.189 13 N -0.572 5.572 14 Si 0.780 3.220 15 H -0.206 1.206 16 H -0.205 1.205 17 H -0.192 1.192 18 C 0.037 3.963 19 C -0.207 4.207 20 C -0.211 4.211 21 C -0.298 4.298 22 H 0.106 0.894 23 H 0.103 0.897 24 H 0.095 0.905 25 H 0.171 0.829 26 H 0.102 0.898 27 H 0.069 0.931 28 H 0.120 0.880 29 H 0.021 0.979 30 H 0.026 0.974 31 H 0.072 0.928 32 H 0.120 0.880 33 H 0.106 0.894 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.113 0.887 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -15.014 1.970 1.747 15.243 hybrid contribution 0.452 -0.006 -0.802 0.921 sum -14.561 1.963 0.944 14.723 Atomic orbital electron populations 1.20818 0.87570 1.04056 1.03655 1.20432 0.98036 0.91605 0.91229 1.21665 0.93586 0.99526 1.12865 1.21506 0.92501 0.93018 0.91813 1.20731 0.99477 0.91934 1.03315 1.67134 1.42267 0.98238 1.22470 1.18800 0.88920 0.86454 0.89871 1.47108 1.06195 1.02181 1.75385 1.18479 0.75333 0.94858 0.95272 1.21588 0.91408 1.49162 0.93032 0.93843 1.25704 0.97106 0.95285 1.00854 1.70043 1.02653 1.52134 1.32327 0.85666 0.77226 0.78649 0.80429 1.20564 1.20461 1.19151 1.21231 0.96966 0.82221 0.95904 1.22068 1.01827 0.99639 0.97135 1.22123 1.01438 1.01157 0.96431 1.21440 0.91827 1.00310 1.16266 0.89381 0.89691 0.90486 0.82873 0.89791 0.93083 0.87951 0.97947 0.97373 0.92786 0.87969 0.89381 0.94238 0.93682 0.94463 0.92773 0.88724 0.83836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.90 10.06 71.24 0.72 -1.18 16 2 C -0.01 -0.15 5.91 -19.69 -0.12 -0.27 16 3 C -0.25 -7.64 9.44 22.37 0.21 -7.43 16 4 C 0.15 5.67 6.78 42.49 0.29 5.96 16 5 C -0.10 -2.96 10.17 71.23 0.72 -2.23 16 6 N -0.58 -27.50 9.02 -181.34 -1.64 -29.13 16 7 C 0.39 17.45 7.38 133.07 0.98 18.44 16 8 N -0.60 -27.27 2.50 -684.19 -1.71 -28.98 16 9 C 0.28 15.66 4.44 85.63 0.38 16.04 16 10 C -0.51 -30.04 7.73 25.60 0.20 -29.84 16 11 H 0.04 2.58 7.70 -2.91 -0.02 2.56 16 12 C 0.01 0.50 5.46 84.66 0.46 0.96 16 13 N -0.93 -57.44 13.29 21.45 0.28 -57.15 16 14 Si 0.95 46.31 29.54 68.60 2.03 48.34 16 15 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 16 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 17 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 18 C 0.14 4.94 3.16 44.99 0.14 5.08 16 19 C -0.15 -5.30 8.50 71.98 0.61 -4.69 16 20 C -0.15 -4.77 9.33 71.98 0.67 -4.10 16 21 C -0.27 -9.43 9.03 22.50 0.20 -9.23 16 22 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.08 1.25 8.10 -2.39 -0.02 1.24 16 24 H 0.08 1.25 8.10 -2.39 -0.02 1.23 16 25 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 26 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 27 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 28 H 0.10 2.31 8.08 -2.39 -0.02 2.29 16 29 H 0.00 0.16 7.37 -2.39 -0.02 0.14 16 30 H 0.01 0.48 6.63 -2.39 -0.02 0.47 16 31 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 32 H 0.10 3.03 5.29 -2.39 -0.01 3.02 16 33 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.04 1.94 6.59 -2.39 -0.02 1.92 16 36 H 0.04 1.36 6.77 -2.38 -0.02 1.34 16 37 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.14 4.17 5.73 -2.91 -0.02 4.15 16 Total: -1.00 -72.42 316.76 5.45 -66.97 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 1.02 Total: 12.46 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: 5.47 Total: -12.50 kcal Atomic # 7 Polarization: -112.21 SS G_CDS: -3.06 Total: -115.27 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -72.42 5.45 -66.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707973153.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.078 kcal (2) G-P(sol) polarization free energy of solvation -72.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds