Wall clock time and date at job start Mon Mar 30 2020 05:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38671 * 120.41573 * 2 1 4 4 C 1.38629 * 118.41671 * 180.02562 * 3 2 1 5 5 C 1.38221 * 119.16626 * 359.97438 * 4 3 2 6 6 N 1.31854 * 120.76103 * 359.97438 * 5 4 3 7 7 C 1.31888 * 121.72624 * 359.71091 * 6 5 4 8 8 C 1.50705 * 119.61940 * 180.31088 * 7 6 5 9 9 C 1.53002 * 109.46714 * 270.26288 * 8 7 6 10 10 N 1.46900 * 109.46942 * 180.02562 * 9 8 7 11 11 C 1.46902 * 110.99831 * 180.02562 * 10 9 8 12 12 H 1.08996 * 109.47390 * 34.99566 * 11 10 9 13 13 C 1.53010 * 109.46619 * 274.99550 * 11 10 9 14 14 C 1.52999 * 109.47175 * 155.00228 * 11 10 9 15 15 C 1.50696 * 109.46795 * 294.99465 * 14 11 10 16 16 H 1.08004 * 120.00197 * 0.02562 * 15 14 11 17 17 C 1.37877 * 120.00157 * 179.97438 * 15 14 11 18 18 N 1.31521 * 119.99886 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00282 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47081 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47147 * 120.00461 * 19 17 15 22 22 H 1.48500 * 109.47066 * 240.00341 * 19 17 15 23 23 H 1.09002 * 109.47152 * 89.99975 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.00076 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.00057 * 1 2 3 26 26 H 1.07998 * 120.79398 * 0.02674 * 3 2 1 27 27 H 1.08004 * 120.41609 * 179.97438 * 4 3 2 28 28 H 1.08000 * 119.62281 * 179.97438 * 5 4 3 29 29 H 1.08998 * 109.47404 * 30.26096 * 8 7 6 30 30 H 1.09001 * 109.47022 * 150.26856 * 8 7 6 31 31 H 1.09004 * 109.47442 * 300.00038 * 9 8 7 32 32 H 1.08997 * 109.47341 * 59.99900 * 9 8 7 33 33 H 1.00898 * 110.99951 * 303.95606 * 10 9 8 34 34 H 1.09003 * 109.46723 * 179.97438 * 13 11 10 35 35 H 1.08996 * 109.47252 * 300.00100 * 13 11 10 36 36 H 1.08997 * 109.46814 * 60.00513 * 13 11 10 37 37 H 1.09003 * 109.47241 * 54.99666 * 14 11 10 38 38 H 1.09002 * 109.47222 * 174.99440 * 14 11 10 39 39 H 0.96994 * 119.99734 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1475 -0.0005 5 6 4.2256 -0.0822 -0.0005 6 7 3.5255 -1.1995 0.0005 7 6 2.2067 -1.1916 0.0072 8 6 1.4540 -2.4972 0.0152 9 6 1.1977 -2.9468 -1.4246 10 7 0.4635 -4.2191 -1.4169 11 6 0.1995 -4.6829 -2.7856 12 1 1.0373 -4.4132 -3.4285 13 6 -1.0783 -4.0243 -3.3097 14 6 0.0261 -6.2031 -2.7844 15 6 1.3242 -6.8563 -2.3856 16 1 2.1866 -6.2481 -2.1555 17 6 1.4108 -8.2305 -2.3133 18 7 0.3606 -8.9712 -2.5931 19 14 3.0201 -9.0404 -1.8196 20 1 4.0412 -7.9942 -1.5592 21 1 2.8120 -9.8455 -0.5893 22 1 3.4861 -9.9252 -2.9174 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3633 -0.8900 0.5139 26 1 1.6890 2.1423 0.0004 27 1 4.1735 2.0593 -0.0010 28 1 5.3046 -0.1285 -0.0014 29 1 2.0441 -3.2537 0.5325 30 1 0.5020 -2.3646 0.5293 31 1 0.6075 -2.1903 -1.9420 32 1 2.1496 -3.0793 -1.9388 33 1 0.9600 -4.9199 -0.8874 34 1 -1.2739 -4.3681 -4.3254 35 1 -1.9160 -4.2940 -2.6667 36 1 -0.9547 -2.9413 -3.3105 37 1 -0.7531 -6.4793 -2.0740 38 1 -0.2572 -6.5372 -3.7825 39 1 0.4214 -9.9378 -2.5419 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709974401.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:10 Heat of formation + Delta-G solvation = -9.121335 kcal Electronic energy + Delta-G solvation = -17626.045748 eV Core-core repulsion = 14952.658870 eV Total energy + Delta-G solvation = -2673.386878 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.30230 -38.42472 -35.55873 -34.59140 -34.12506 -32.10166 -29.36857 -29.07392 -27.84956 -25.28951 -24.14067 -23.15077 -22.05639 -21.08441 -18.53201 -17.77947 -17.38705 -16.77810 -16.38291 -16.17309 -15.64915 -15.30065 -14.87857 -14.54139 -14.09069 -13.84308 -13.72308 -13.63077 -13.46242 -13.35293 -13.14962 -13.00567 -12.62158 -12.43484 -12.37835 -12.25501 -12.13809 -11.72546 -11.25188 -11.01110 -10.61895 -10.58648 -10.31355 -9.67665 -9.24833 -8.20717 -6.30894 0.17917 0.38861 1.37399 1.38735 1.50993 2.39294 2.81431 3.09955 3.25838 3.59020 3.92625 3.97502 4.02739 4.16265 4.21220 4.28983 4.36845 4.54467 4.61504 4.66237 4.71861 4.81663 4.82959 4.87281 4.96536 5.00458 5.09765 5.20927 5.27749 5.32249 5.34386 5.42128 5.49579 5.55018 5.83421 5.87156 6.20332 6.37118 6.59343 6.84128 7.12023 7.37925 8.91025 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.025481 B = 0.004801 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.595084 B = 5830.906594 C = 6667.820887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.137 4.137 3 C -0.080 4.080 4 C -0.170 4.170 5 C 0.073 3.927 6 N -0.520 5.520 7 C 0.110 3.890 8 C -0.065 4.065 9 C 0.081 3.919 10 N -0.679 5.679 11 C 0.094 3.906 12 H 0.017 0.983 13 C -0.126 4.126 14 C 0.028 3.972 15 C -0.536 4.536 16 H 0.052 0.948 17 C 0.008 3.992 18 N -0.928 5.928 19 Si 0.958 3.042 20 H -0.268 1.268 21 H -0.276 1.276 22 H -0.279 1.279 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.073 0.927 26 H 0.165 0.835 27 H 0.166 0.834 28 H 0.170 0.830 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.003 0.997 33 H 0.342 0.658 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.002 0.998 38 H -0.004 1.004 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.563 22.497 5.696 23.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.139 4.139 3 C -0.106 4.106 4 C -0.189 4.189 5 C -0.084 4.084 6 N -0.229 5.229 7 C -0.027 4.027 8 C -0.103 4.103 9 C -0.049 4.049 10 N -0.311 5.311 11 C -0.016 4.016 12 H 0.035 0.965 13 C -0.184 4.184 14 C -0.009 4.009 15 C -0.574 4.574 16 H 0.070 0.930 17 C -0.191 4.191 18 N -0.568 5.568 19 Si 0.783 3.217 20 H -0.193 1.193 21 H -0.202 1.202 22 H -0.204 1.204 23 H 0.096 0.904 24 H 0.107 0.893 25 H 0.091 0.909 26 H 0.183 0.817 27 H 0.184 0.816 28 H 0.187 0.813 29 H 0.081 0.919 30 H 0.122 0.878 31 H 0.094 0.906 32 H 0.021 0.979 33 H 0.161 0.839 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.020 0.980 38 H 0.015 0.985 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.328 21.815 5.745 22.678 hybrid contribution 1.384 -0.581 -0.235 1.520 sum 3.713 21.233 5.510 22.248 Atomic orbital electron populations 1.20878 0.88648 1.04124 1.03343 1.21018 0.98865 0.93254 1.00724 1.21906 0.94437 0.98657 0.95571 1.22477 0.95678 0.99938 1.00807 1.23168 1.01229 0.87950 0.96022 1.67459 1.08803 1.33504 1.13122 1.21138 0.89614 0.95355 0.96615 1.20477 1.00014 0.92633 0.97155 1.21741 0.94924 0.92566 0.95705 1.60653 1.50754 1.05657 1.14076 1.21453 0.96265 0.95311 0.88581 0.96498 1.21697 0.96910 0.99910 0.99860 1.19138 0.95796 0.90712 0.95302 1.21533 0.97714 0.92008 1.46106 0.93013 1.25839 0.99748 0.98246 0.95248 1.70090 1.31162 1.05532 1.50029 0.85502 0.79685 0.78443 0.78031 1.19270 1.20168 1.20443 0.90402 0.89317 0.90863 0.81747 0.81604 0.81271 0.91948 0.87776 0.90556 0.97891 0.83879 0.92914 0.92686 0.91972 0.97982 0.98543 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.85 9.63 71.24 0.69 -1.17 16 2 C -0.14 -2.90 5.90 -19.77 -0.12 -3.01 16 3 C -0.08 -1.32 9.86 22.47 0.22 -1.10 16 4 C -0.17 -2.78 10.11 22.36 0.23 -2.55 16 5 C 0.07 1.62 11.18 84.69 0.95 2.57 16 6 N -0.52 -15.46 10.27 -183.88 -1.89 -17.35 16 7 C 0.11 3.04 6.03 42.54 0.26 3.30 16 8 C -0.06 -1.90 5.36 29.85 0.16 -1.74 16 9 C 0.08 2.69 5.47 86.30 0.47 3.17 16 10 N -0.68 -26.71 6.31 -491.55 -3.10 -29.81 16 11 C 0.09 4.02 2.59 44.92 0.12 4.14 16 12 H 0.02 0.76 7.80 -2.39 -0.02 0.75 16 13 C -0.13 -4.45 9.42 71.99 0.68 -3.78 16 14 C 0.03 1.49 4.57 29.85 0.14 1.62 16 15 C -0.54 -30.59 8.12 25.60 0.21 -30.38 16 16 H 0.05 2.90 7.49 -2.91 -0.02 2.88 16 17 C 0.01 0.44 5.46 84.65 0.46 0.90 16 18 N -0.93 -56.66 13.29 21.45 0.28 -56.37 16 19 Si 0.96 45.19 29.54 68.60 2.03 47.22 16 20 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 23 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.09 1.02 8.10 -2.39 -0.02 1.00 16 25 H 0.07 1.29 5.95 -2.38 -0.01 1.28 16 26 H 0.17 1.57 8.06 -2.91 -0.02 1.54 16 27 H 0.17 1.49 8.06 -2.91 -0.02 1.46 16 28 H 0.17 2.86 8.06 -2.91 -0.02 2.84 16 29 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.10 2.69 5.94 -2.39 -0.01 2.68 16 31 H 0.08 2.31 7.44 -2.39 -0.02 2.30 16 32 H 0.00 0.11 8.05 -2.39 -0.02 0.09 16 33 H 0.34 14.96 7.21 -89.70 -0.65 14.31 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.06 1.86 7.45 -2.39 -0.02 1.85 16 37 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 39 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -68.09 321.18 2.15 -65.94 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.37 Total: 18.39 kcal Atomic # 6 Polarization: -32.48 SS G_CDS: 4.45 Total: -28.02 kcal Atomic # 7 Polarization: -98.82 SS G_CDS: -4.71 Total: -103.53 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -68.09 2.15 -65.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709974401.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.819 kcal (2) G-P(sol) polarization free energy of solvation -68.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds