Wall clock time and date at job start Mon Mar 30 2020 06:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46716 * 2 1 4 4 N 1.46503 * 109.47570 * 119.99771 * 2 1 3 5 5 C 1.46497 * 120.00139 * 120.39127 * 4 2 1 6 6 C 1.50700 * 109.47032 * 90.00553 * 5 4 2 7 7 H 1.08006 * 119.99684 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00268 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00109 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 119.99855 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.47070 * 89.99803 * 10 8 6 12 12 H 1.48491 * 109.47204 * 210.00290 * 10 8 6 13 13 H 1.48506 * 109.46836 * 330.00195 * 10 8 6 14 14 C 1.39673 * 119.99668 * 300.40077 * 4 2 1 15 15 C 1.38911 * 120.07696 * 358.54890 * 14 4 2 16 16 C 1.38108 * 119.92405 * 179.77526 * 15 14 4 17 17 C 1.38283 * 120.07362 * 0.50424 * 16 15 14 18 18 C 1.50701 * 119.92764 * 179.72413 * 17 16 15 19 19 N 1.46898 * 109.47232 * 270.02852 * 18 17 16 20 20 C 1.38286 * 120.15382 * 359.75275 * 17 16 15 21 21 C 1.38105 * 120.07157 * 359.97438 * 20 17 16 22 22 H 1.08998 * 109.47498 * 304.64595 * 1 2 3 23 23 H 1.08994 * 109.47261 * 64.65678 * 1 2 3 24 24 H 1.09009 * 109.46610 * 184.65212 * 1 2 3 25 25 H 1.09000 * 109.47585 * 240.00075 * 2 1 3 26 26 H 1.09001 * 109.47011 * 188.88940 * 3 2 1 27 27 H 1.08997 * 109.47512 * 308.88750 * 3 2 1 28 28 H 1.09000 * 109.47219 * 68.89532 * 3 2 1 29 29 H 1.08999 * 109.46945 * 210.00359 * 5 4 2 30 30 H 1.08999 * 109.47425 * 330.00675 * 5 4 2 31 31 H 0.96995 * 120.00508 * 179.97438 * 9 8 6 32 32 H 1.07993 * 120.03970 * 0.02562 * 15 14 4 33 33 H 1.07999 * 119.96303 * 180.25810 * 16 15 14 34 34 H 1.09001 * 109.46682 * 30.02392 * 18 17 16 35 35 H 1.08997 * 109.47791 * 150.02169 * 18 17 16 36 36 H 1.00894 * 111.00248 * 56.04064 * 19 18 17 37 37 H 1.00907 * 111.00261 * 179.97438 * 19 18 17 38 38 H 1.08001 * 119.96661 * 179.97438 * 20 17 16 39 39 H 1.08000 * 120.03719 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8677 -1.8766 1.0618 6 6 4.3144 -1.4565 1.0214 7 1 4.5751 -0.4106 1.0894 8 6 5.3053 -2.4073 0.8975 9 7 6.5677 -2.0406 0.8617 10 14 4.8544 -4.2163 0.7805 11 1 4.6641 -4.5878 -0.6446 12 1 5.9453 -5.0370 1.3647 13 1 3.5953 -4.4619 1.5285 14 6 1.6741 -0.2182 2.4647 15 6 0.8937 0.9236 2.5942 16 6 0.5512 1.3853 3.8500 17 6 0.9930 0.7182 4.9778 18 6 0.6226 1.2284 6.3466 19 7 1.6433 2.1789 6.8077 20 6 1.7746 -0.4157 4.8527 21 6 2.1160 -0.8860 3.5998 22 1 -0.3634 0.5842 0.8454 23 1 -0.3633 0.4399 -0.9287 24 1 -0.3633 -1.0244 0.0834 25 1 1.8934 -0.5138 -0.8900 26 1 3.1182 1.4467 -0.1588 27 1 1.5527 2.0002 -0.7999 28 1 1.8121 1.9084 0.9587 29 1 2.7052 -2.5382 1.9127 30 1 2.6159 -2.4014 0.1402 31 1 7.2648 -2.7094 0.7749 32 1 0.5517 1.4474 1.7139 33 1 -0.0590 2.2706 3.9513 34 1 -0.3445 1.7290 6.2982 35 1 0.5642 0.3918 7.0428 36 1 1.7621 2.9312 6.1460 37 1 1.4173 2.5360 7.7240 38 1 2.1184 -0.9341 5.7355 39 1 2.7268 -1.7714 3.5027 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723186005.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:12 Heat of formation + Delta-G solvation = 40.491059 kcal Electronic energy + Delta-G solvation = -18393.442760 eV Core-core repulsion = 15722.207237 eV Total energy + Delta-G solvation = -2671.235523 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.43606 -36.89796 -34.06408 -33.24763 -31.76829 -30.02410 -29.27004 -26.96300 -26.77929 -24.19956 -22.51754 -21.52457 -20.90525 -19.36629 -16.88827 -16.45013 -15.82902 -15.48951 -14.76726 -14.50789 -14.15792 -13.85202 -13.45199 -13.34846 -13.03722 -12.58521 -12.54297 -12.44887 -12.08951 -11.83313 -11.56540 -11.42945 -11.10851 -10.92654 -10.85150 -10.63420 -10.28844 -10.04222 -9.70932 -9.53790 -8.89929 -8.63833 -8.55505 -8.25410 -6.38705 -6.11862 -4.11439 2.08536 2.21231 3.22474 3.30982 3.31746 3.97274 4.34255 4.42797 4.94424 5.17832 5.24672 5.28653 5.33151 5.53720 5.56091 5.60206 5.70100 5.83651 5.92412 5.99728 6.01357 6.14355 6.26139 6.28897 6.42289 6.56201 6.61945 6.72105 6.78568 6.80364 7.01178 7.10004 7.16850 7.33654 7.52263 7.55415 7.58152 8.10488 8.38846 8.54864 8.96629 9.48214 11.01205 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019469 B = 0.007263 C = 0.005993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.855825 B = 3854.090481 C = 4671.381779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.151 3.849 3 C -0.179 4.179 4 N -0.601 5.601 5 C 0.220 3.780 6 C -0.531 4.531 7 H 0.077 0.923 8 C 0.072 3.928 9 N -0.895 5.895 10 Si 0.871 3.129 11 H -0.276 1.276 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.247 3.753 15 C -0.228 4.228 16 C -0.074 4.074 17 C -0.171 4.171 18 C 0.116 3.884 19 N -0.847 5.847 20 C -0.052 4.052 21 C -0.190 4.190 22 H 0.070 0.930 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.084 0.916 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.031 0.969 30 H 0.022 0.978 31 H 0.264 0.736 32 H 0.134 0.866 33 H 0.104 0.896 34 H 0.023 0.977 35 H 0.070 0.930 36 H 0.341 0.659 37 H 0.333 0.667 38 H 0.111 0.889 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.590 5.706 4.308 15.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.047 3.953 3 C -0.237 4.237 4 N -0.306 5.306 5 C 0.099 3.901 6 C -0.570 4.570 7 H 0.095 0.905 8 C -0.130 4.130 9 N -0.533 5.533 10 Si 0.698 3.302 11 H -0.201 1.201 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.141 3.859 15 C -0.250 4.250 16 C -0.093 4.093 17 C -0.174 4.174 18 C -0.014 4.014 19 N -0.376 5.376 20 C -0.072 4.072 21 C -0.213 4.213 22 H 0.089 0.911 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.102 0.898 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.049 0.951 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.151 0.849 33 H 0.122 0.878 34 H 0.041 0.959 35 H 0.088 0.912 36 H 0.153 0.847 37 H 0.145 0.855 38 H 0.129 0.871 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.834 4.904 4.028 14.318 hybrid contribution -0.616 -0.294 -0.177 0.705 sum -13.450 4.611 3.851 14.731 Atomic orbital electron populations 1.22518 0.96613 1.02372 1.02070 1.20777 0.92546 0.93249 0.88752 1.22477 1.02448 0.96481 1.02309 1.46914 1.52100 1.30348 1.01249 1.19682 0.90443 0.83431 0.96560 1.21488 0.88666 0.96113 1.50744 0.90482 1.24897 0.94851 0.98648 0.94637 1.69897 0.99367 1.34071 1.49991 0.86928 0.78695 0.85799 0.78783 1.20122 1.20955 1.18961 1.17826 0.90983 0.91442 0.85686 1.21051 1.06857 0.99417 0.97710 1.20563 0.98656 0.98060 0.92020 1.19243 1.05489 0.99125 0.93549 1.20492 0.91459 0.95395 0.94006 1.58749 1.50343 1.21873 1.06658 1.20636 0.95178 0.94990 0.96367 1.20851 1.05845 1.03432 0.91123 0.91093 0.92438 0.92643 0.89789 0.91744 0.92814 0.90905 0.95074 0.96030 0.92559 0.84892 0.87752 0.95880 0.91182 0.84696 0.85475 0.87054 0.85481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.49 8.98 37.16 0.33 -2.16 16 2 C 0.15 2.61 3.28 -67.93 -0.22 2.39 16 3 C -0.18 -2.90 8.97 37.16 0.33 -2.57 16 4 N -0.60 -12.30 2.51 -165.55 -0.42 -12.72 16 5 C 0.22 5.15 3.98 -5.20 -0.02 5.13 16 6 C -0.53 -14.73 9.94 -34.44 -0.34 -15.07 16 7 H 0.08 2.40 8.06 -52.48 -0.42 1.97 16 8 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 9 N -0.89 -27.12 13.96 55.43 0.77 -26.35 16 10 Si 0.87 20.82 27.47 -169.99 -4.67 16.15 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 14 C 0.25 4.87 6.14 -83.78 -0.51 4.36 16 15 C -0.23 -3.85 6.77 -39.38 -0.27 -4.12 16 16 C -0.07 -1.13 9.69 -39.61 -0.38 -1.52 16 17 C -0.17 -2.70 5.39 -104.59 -0.56 -3.26 16 18 C 0.12 1.48 6.91 -4.98 -0.03 1.44 16 19 N -0.85 -10.22 9.61 -11.41 -0.11 -10.33 16 20 C -0.05 -0.92 9.69 -39.61 -0.38 -1.31 16 21 C -0.19 -3.84 9.22 -39.38 -0.36 -4.20 16 22 H 0.07 0.98 4.80 -51.93 -0.25 0.73 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 25 H 0.08 1.49 7.79 -51.93 -0.40 1.08 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 28 H 0.07 1.18 4.66 -51.93 -0.24 0.94 16 29 H 0.03 0.74 5.21 -51.93 -0.27 0.47 16 30 H 0.02 0.50 7.34 -51.93 -0.38 0.11 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.13 2.03 3.40 -52.49 -0.18 1.85 16 33 H 0.10 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.02 0.26 8.08 -51.93 -0.42 -0.16 16 35 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 36 H 0.34 3.97 8.98 -39.29 -0.35 3.61 16 37 H 0.33 3.12 9.08 -39.29 -0.36 2.77 16 38 H 0.11 1.81 8.06 -52.49 -0.42 1.38 16 39 H 0.13 2.76 6.12 -52.49 -0.32 2.44 16 LS Contribution 307.31 15.07 4.63 4.63 Total: -1.00 -30.23 307.31 -8.04 -38.27 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -5.72 Total: 9.27 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -2.53 Total: -18.94 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: 0.25 Total: -49.39 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.67 Total: 16.15 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.23 -8.04 -38.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723186005.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.764 kcal (2) G-P(sol) polarization free energy of solvation -30.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds