Wall clock time and date at job start Mon Mar 30 2020 06:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46716 * 2 1 4 4 N 1.46503 * 109.47570 * 119.99771 * 2 1 3 5 5 C 1.46497 * 120.00139 * 120.39127 * 4 2 1 6 6 C 1.50700 * 109.47032 * 90.00553 * 5 4 2 7 7 H 1.08006 * 119.99684 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00268 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00109 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 119.99855 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.47070 * 89.99803 * 10 8 6 12 12 H 1.48491 * 109.47204 * 210.00290 * 10 8 6 13 13 H 1.48506 * 109.46836 * 330.00195 * 10 8 6 14 14 C 1.39673 * 119.99668 * 300.40077 * 4 2 1 15 15 C 1.38911 * 120.07696 * 358.54890 * 14 4 2 16 16 C 1.38108 * 119.92405 * 179.77526 * 15 14 4 17 17 C 1.38283 * 120.07362 * 0.50424 * 16 15 14 18 18 C 1.50701 * 119.92764 * 179.72413 * 17 16 15 19 19 N 1.46898 * 109.47232 * 270.02852 * 18 17 16 20 20 C 1.38286 * 120.15382 * 359.75275 * 17 16 15 21 21 C 1.38105 * 120.07157 * 359.97438 * 20 17 16 22 22 H 1.08998 * 109.47498 * 304.64595 * 1 2 3 23 23 H 1.08994 * 109.47261 * 64.65678 * 1 2 3 24 24 H 1.09009 * 109.46610 * 184.65212 * 1 2 3 25 25 H 1.09000 * 109.47585 * 240.00075 * 2 1 3 26 26 H 1.09001 * 109.47011 * 188.88940 * 3 2 1 27 27 H 1.08997 * 109.47512 * 308.88750 * 3 2 1 28 28 H 1.09000 * 109.47219 * 68.89532 * 3 2 1 29 29 H 1.08999 * 109.46945 * 210.00359 * 5 4 2 30 30 H 1.08999 * 109.47425 * 330.00675 * 5 4 2 31 31 H 0.96995 * 120.00508 * 179.97438 * 9 8 6 32 32 H 1.07993 * 120.03970 * 0.02562 * 15 14 4 33 33 H 1.07999 * 119.96303 * 180.25810 * 16 15 14 34 34 H 1.09001 * 109.46682 * 30.02392 * 18 17 16 35 35 H 1.08997 * 109.47791 * 150.02169 * 18 17 16 36 36 H 1.00894 * 111.00248 * 56.04064 * 19 18 17 37 37 H 1.00907 * 111.00261 * 179.97438 * 19 18 17 38 38 H 1.08001 * 119.96661 * 179.97438 * 20 17 16 39 39 H 1.08000 * 120.03719 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8677 -1.8766 1.0618 6 6 4.3144 -1.4565 1.0214 7 1 4.5751 -0.4106 1.0894 8 6 5.3053 -2.4073 0.8975 9 7 6.5677 -2.0406 0.8617 10 14 4.8544 -4.2163 0.7805 11 1 4.6641 -4.5878 -0.6446 12 1 5.9453 -5.0370 1.3647 13 1 3.5953 -4.4619 1.5285 14 6 1.6741 -0.2182 2.4647 15 6 0.8937 0.9236 2.5942 16 6 0.5512 1.3853 3.8500 17 6 0.9930 0.7182 4.9778 18 6 0.6226 1.2284 6.3466 19 7 1.6433 2.1789 6.8077 20 6 1.7746 -0.4157 4.8527 21 6 2.1160 -0.8860 3.5998 22 1 -0.3634 0.5842 0.8454 23 1 -0.3633 0.4399 -0.9287 24 1 -0.3633 -1.0244 0.0834 25 1 1.8934 -0.5138 -0.8900 26 1 3.1182 1.4467 -0.1588 27 1 1.5527 2.0002 -0.7999 28 1 1.8121 1.9084 0.9587 29 1 2.7052 -2.5382 1.9127 30 1 2.6159 -2.4014 0.1402 31 1 7.2648 -2.7094 0.7749 32 1 0.5517 1.4474 1.7139 33 1 -0.0590 2.2706 3.9513 34 1 -0.3445 1.7290 6.2982 35 1 0.5642 0.3918 7.0428 36 1 1.7621 2.9312 6.1460 37 1 1.4173 2.5360 7.7240 38 1 2.1184 -0.9341 5.7355 39 1 2.7268 -1.7714 3.5027 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723186005.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:12 Heat of formation + Delta-G solvation = 20.475274 kcal Electronic energy + Delta-G solvation = -18394.310709 eV Core-core repulsion = 15722.207237 eV Total energy + Delta-G solvation = -2672.103473 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.82971 -38.23561 -35.20351 -35.14950 -33.46840 -31.36119 -30.79410 -28.64814 -27.99414 -25.48982 -24.17100 -23.06443 -22.17861 -20.79554 -19.04700 -17.81244 -17.17757 -16.84842 -16.22192 -15.97775 -15.45025 -15.16788 -14.84277 -14.78111 -14.63503 -14.30199 -13.81477 -13.76068 -13.53158 -13.25388 -13.12150 -12.78920 -12.63623 -12.41539 -12.29224 -12.12580 -11.98844 -11.73350 -11.49647 -11.00677 -10.81901 -10.40544 -9.63698 -9.47497 -8.32987 -7.87775 -6.37467 0.70734 0.85565 1.31697 1.34218 1.44414 2.29932 2.48711 3.00817 3.08907 3.94158 4.00860 4.09904 4.16404 4.26217 4.31236 4.38527 4.48552 4.64954 4.70132 4.75853 4.78578 4.83287 4.92379 4.95687 4.97953 5.05499 5.10571 5.31642 5.39739 5.42539 5.49707 5.62842 5.68448 5.93350 6.11944 6.22987 6.34935 6.62857 6.72453 6.74083 6.93092 7.27957 8.84591 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019469 B = 0.007263 C = 0.005993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.855825 B = 3854.090481 C = 4671.381779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.142 3.858 3 C -0.171 4.171 4 N -0.614 5.614 5 C 0.231 3.769 6 C -0.531 4.531 7 H 0.025 0.975 8 C 0.011 3.989 9 N -0.947 5.947 10 Si 0.945 3.055 11 H -0.261 1.261 12 H -0.282 1.282 13 H -0.248 1.248 14 C 0.220 3.780 15 C -0.223 4.223 16 C -0.069 4.069 17 C -0.164 4.164 18 C 0.119 3.881 19 N -0.860 5.860 20 C -0.063 4.063 21 C -0.222 4.222 22 H 0.076 0.924 23 H 0.087 0.913 24 H 0.049 0.951 25 H 0.072 0.928 26 H 0.025 0.975 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.029 0.971 30 H 0.031 0.969 31 H 0.267 0.733 32 H 0.153 0.847 33 H 0.143 0.857 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.344 0.656 37 H 0.350 0.650 38 H 0.118 0.882 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.613 6.310 4.776 18.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 C -0.229 4.229 4 N -0.322 5.322 5 C 0.108 3.892 6 C -0.570 4.570 7 H 0.043 0.957 8 C -0.187 4.187 9 N -0.587 5.587 10 Si 0.768 3.232 11 H -0.186 1.186 12 H -0.208 1.208 13 H -0.172 1.172 14 C 0.116 3.884 15 C -0.245 4.245 16 C -0.088 4.088 17 C -0.167 4.167 18 C -0.011 4.011 19 N -0.391 5.391 20 C -0.082 4.082 21 C -0.245 4.245 22 H 0.095 0.905 23 H 0.105 0.895 24 H 0.068 0.932 25 H 0.090 0.910 26 H 0.044 0.956 27 H 0.108 0.892 28 H 0.092 0.908 29 H 0.046 0.954 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.170 0.830 33 H 0.161 0.839 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.156 0.844 37 H 0.164 0.836 38 H 0.136 0.864 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.896 5.542 4.517 17.430 hybrid contribution 0.337 -0.320 -0.232 0.519 sum -15.559 5.222 4.285 16.962 Atomic orbital electron populations 1.22394 0.93434 1.02494 1.03856 1.21030 0.94956 0.93090 0.87126 1.22413 1.00232 0.96586 1.03684 1.46883 1.52384 1.30195 1.02689 1.19344 0.88291 0.84989 0.96578 1.21670 0.91533 0.93733 1.50039 0.95660 1.25861 0.94477 1.04196 0.94146 1.70065 1.00797 1.35985 1.51871 0.85746 0.78948 0.78853 0.79644 1.18564 1.20768 1.17168 1.18090 0.92416 0.92824 0.85087 1.21310 1.05694 0.98117 0.99346 1.20998 0.98009 0.98721 0.91029 1.19646 1.03607 0.97795 0.95645 1.20481 0.92595 0.95948 0.92042 1.58673 1.50485 1.22187 1.07795 1.20809 0.95756 0.96067 0.95578 1.20823 1.07247 1.03574 0.92860 0.90518 0.89452 0.93178 0.90966 0.95558 0.89178 0.90802 0.95350 0.95086 0.92410 0.82986 0.83949 0.93368 0.90791 0.84372 0.83577 0.86390 0.88444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.17 8.98 71.98 0.65 -3.52 16 2 C 0.14 4.80 3.28 44.99 0.15 4.95 16 3 C -0.17 -5.46 8.97 71.98 0.65 -4.81 16 4 N -0.61 -25.64 2.51 -677.66 -1.70 -27.35 16 5 C 0.23 11.12 3.98 85.63 0.34 11.46 16 6 C -0.53 -31.01 9.94 25.60 0.25 -30.76 16 7 H 0.03 1.69 8.06 -2.91 -0.02 1.66 16 8 C 0.01 0.64 5.47 84.66 0.46 1.10 16 9 N -0.95 -59.98 13.96 21.45 0.30 -59.68 16 10 Si 0.95 43.86 27.47 68.60 1.88 45.74 16 11 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 14 C 0.22 8.76 6.14 38.22 0.23 9.00 16 15 C -0.22 -7.11 6.77 22.40 0.15 -6.96 16 16 C -0.07 -1.89 9.69 22.25 0.22 -1.67 16 17 C -0.16 -4.80 5.39 -19.84 -0.11 -4.90 16 18 C 0.12 2.63 6.91 85.56 0.59 3.22 16 19 N -0.86 -18.32 9.61 -190.01 -1.83 -20.15 16 20 C -0.06 -2.21 9.69 22.25 0.22 -2.00 16 21 C -0.22 -9.27 9.22 22.40 0.21 -9.07 16 22 H 0.08 1.85 4.80 -2.39 -0.01 1.84 16 23 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 25 H 0.07 2.57 7.79 -2.39 -0.02 2.55 16 26 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.09 2.16 8.12 -2.39 -0.02 2.14 16 28 H 0.07 2.31 4.66 -2.39 -0.01 2.30 16 29 H 0.03 1.39 5.21 -2.39 -0.01 1.38 16 30 H 0.03 1.43 7.34 -2.39 -0.02 1.41 16 31 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 32 H 0.15 4.19 3.40 -2.91 -0.01 4.18 16 33 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 34 H 0.05 0.85 8.08 -2.39 -0.02 0.83 16 35 H 0.07 1.59 8.08 -2.39 -0.02 1.57 16 36 H 0.34 7.00 8.98 -89.70 -0.81 6.19 16 37 H 0.35 5.51 9.08 -89.69 -0.81 4.70 16 38 H 0.12 3.85 8.06 -2.91 -0.02 3.83 16 39 H 0.10 4.52 6.12 -2.91 -0.02 4.51 16 Total: -1.00 -69.60 307.31 2.05 -67.55 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: -0.61 Total: 27.85 kcal Atomic # 6 Polarization: -37.96 SS G_CDS: 4.01 Total: -33.96 kcal Atomic # 7 Polarization: -103.95 SS G_CDS: -3.23 Total: -107.18 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.88 Total: 45.74 kcal Total: -69.60 2.05 -67.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723186005.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.023 kcal (2) G-P(sol) polarization free energy of solvation -69.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds