Wall clock time and date at job start Mon Mar 30 2020 06:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47332 * 2 1 4 4 N 1.46902 * 109.46783 * 240.00326 * 2 1 3 5 5 C 1.46899 * 110.99945 * 298.78173 * 4 2 1 6 6 C 1.50698 * 109.47494 * 292.35634 * 5 4 2 7 7 H 1.08003 * 119.99819 * 4.43805 * 6 5 4 8 8 C 1.37875 * 120.00339 * 184.42859 * 6 5 4 9 9 N 1.31515 * 119.99872 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00152 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47353 * 90.00021 * 10 8 6 12 12 H 1.48503 * 109.46945 * 210.00161 * 10 8 6 13 13 H 1.48500 * 109.47043 * 329.99956 * 10 8 6 14 14 C 1.39675 * 111.00179 * 62.74067 * 4 2 1 15 15 C 1.38930 * 120.07133 * 293.01545 * 14 4 2 16 16 C 1.38091 * 119.92506 * 179.97438 * 15 14 4 17 17 C 1.38303 * 120.06970 * 0.02882 * 16 15 14 18 18 C 1.38259 * 120.15555 * 359.97438 * 17 16 15 19 19 C 1.38130 * 120.07361 * 359.74163 * 18 17 16 20 20 C 1.50693 * 120.03971 * 180.27767 * 19 18 17 21 21 N 1.46904 * 109.47118 * 260.25621 * 20 19 18 22 22 H 1.09004 * 109.46987 * 51.48895 * 1 2 3 23 23 H 1.08994 * 109.47207 * 171.49186 * 1 2 3 24 24 H 1.09001 * 109.47074 * 291.49271 * 1 2 3 25 25 H 1.08994 * 109.47099 * 120.00383 * 2 1 3 26 26 H 1.08998 * 109.46752 * 61.44275 * 3 2 1 27 27 H 1.08991 * 109.46743 * 181.44526 * 3 2 1 28 28 H 1.09002 * 109.46839 * 301.44961 * 3 2 1 29 29 H 1.08999 * 109.47263 * 52.36055 * 5 4 2 30 30 H 1.09006 * 109.46959 * 172.35565 * 5 4 2 31 31 H 0.97003 * 120.00186 * 179.97438 * 9 8 6 32 32 H 1.08007 * 120.04004 * 359.96343 * 15 14 4 33 33 H 1.08002 * 119.95975 * 180.02562 * 16 15 14 34 34 H 1.07998 * 119.92034 * 179.97438 * 17 16 15 35 35 H 1.07999 * 119.96807 * 180.02562 * 18 17 16 36 36 H 1.09002 * 109.47137 * 20.25495 * 20 19 18 37 37 H 1.08998 * 109.47523 * 140.25400 * 20 19 18 38 38 H 1.00899 * 110.99642 * 56.04930 * 21 20 19 39 39 H 1.00907 * 110.99720 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 1.5725 -2.0916 -1.2190 6 6 2.2493 -2.8509 -0.1071 7 1 2.8865 -2.3302 0.5924 8 6 2.0550 -4.2102 0.0174 9 7 1.2793 -4.8443 -0.8345 10 14 2.8934 -5.1512 1.3962 11 1 2.0128 -5.1668 2.5917 12 1 3.1554 -6.5451 0.9561 13 1 4.1786 -4.4897 1.7367 14 6 1.6233 -0.0240 -2.3602 15 6 0.2794 0.0299 -2.7080 16 6 -0.1091 0.6920 -3.8559 17 6 0.8382 1.3004 -4.6592 18 6 2.1765 1.2486 -4.3160 19 6 2.5713 0.5930 -3.1661 20 6 4.0296 0.5423 -2.7895 21 7 4.5925 -0.7558 -3.1847 22 1 -0.3633 0.6399 -0.8042 23 1 -0.3633 -1.0163 -0.1520 24 1 -0.3633 0.3765 0.9562 25 1 1.8933 -0.5139 0.8899 26 1 1.6980 1.9488 0.9026 27 1 3.1297 1.4425 -0.0259 28 1 1.6556 1.9638 -0.8767 29 1 0.4921 -2.1298 -1.0799 30 1 1.8316 -2.5425 -2.1770 31 1 1.1428 -5.8007 -0.7472 32 1 -0.4608 -0.4455 -2.0814 33 1 -1.1538 0.7347 -4.1266 34 1 0.5317 1.8173 -5.5566 35 1 2.9136 1.7251 -4.9453 36 1 4.5651 1.3417 -3.3018 37 1 4.1312 0.6695 -1.7118 38 1 4.4529 -0.9257 -4.1694 39 1 5.5703 -0.8147 -2.9423 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723187974.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:14 Heat of formation + Delta-G solvation = 41.953754 kcal Electronic energy + Delta-G solvation = -19011.326367 eV Core-core repulsion = 16340.154271 eV Total energy + Delta-G solvation = -2671.172096 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.85004 -36.65754 -34.31632 -32.68929 -31.12907 -30.18349 -29.03332 -26.91216 -25.96842 -24.25540 -22.40075 -21.62281 -20.77502 -19.00116 -16.22803 -16.01542 -15.46224 -15.35656 -15.01490 -14.67237 -14.03148 -13.82015 -13.64820 -13.11664 -12.89134 -12.60665 -12.15210 -12.06624 -11.78618 -11.58764 -11.27816 -11.08872 -10.92785 -10.77647 -10.62305 -10.42117 -10.34415 -9.86932 -9.83232 -9.11630 -8.37875 -8.34598 -8.04139 -7.96842 -7.19018 -5.92869 -3.92186 1.80518 1.85420 3.37038 3.43353 3.47991 4.18025 4.49870 4.89755 5.16264 5.27253 5.35957 5.43096 5.45428 5.56796 5.61636 5.76290 5.83069 5.93039 6.01764 6.08530 6.18586 6.21336 6.31412 6.41172 6.54717 6.57347 6.77793 6.83195 6.87064 6.93358 7.13155 7.30763 7.49667 7.55941 7.68084 7.93627 7.95498 8.27995 8.30189 8.76611 9.13132 9.70005 11.18023 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.022766 B = 0.007611 C = 0.007218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.635982 B = 3677.896655 C = 3878.478435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.087 3.913 3 C -0.143 4.143 4 N -0.489 5.489 5 C 0.203 3.797 6 C -0.495 4.495 7 H 0.061 0.939 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.895 3.105 11 H -0.283 1.283 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.147 3.853 15 C -0.161 4.161 16 C -0.118 4.118 17 C -0.142 4.142 18 C -0.119 4.119 19 C -0.078 4.078 20 C 0.122 3.878 21 N -0.825 5.825 22 H 0.057 0.943 23 H 0.071 0.929 24 H 0.047 0.953 25 H 0.092 0.908 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.047 0.953 29 H -0.005 1.005 30 H 0.035 0.965 31 H 0.259 0.741 32 H 0.130 0.870 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.012 0.988 37 H 0.087 0.913 38 H 0.331 0.669 39 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.044 12.718 -4.419 13.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.020 4.020 3 C -0.201 4.201 4 N -0.210 5.210 5 C 0.080 3.920 6 C -0.534 4.534 7 H 0.079 0.921 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.723 3.277 11 H -0.210 1.210 12 H -0.214 1.214 13 H -0.199 1.199 14 C 0.052 3.948 15 C -0.181 4.181 16 C -0.137 4.137 17 C -0.161 4.161 18 C -0.138 4.138 19 C -0.079 4.079 20 C -0.009 4.009 21 N -0.354 5.354 22 H 0.076 0.924 23 H 0.090 0.910 24 H 0.066 0.934 25 H 0.110 0.890 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.013 0.987 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.147 0.853 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.030 0.970 37 H 0.106 0.894 38 H 0.143 0.857 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.002 12.204 -3.890 12.848 hybrid contribution 0.017 -0.158 -0.052 0.167 sum 1.019 12.046 -3.943 12.715 Atomic orbital electron populations 1.22859 0.98903 1.02781 1.00975 1.21569 0.92006 0.93526 0.94873 1.21905 1.01283 0.96362 1.00536 1.60092 1.59103 1.04102 0.97719 1.19770 0.93550 0.80273 0.98428 1.21086 1.27970 0.92332 1.11979 0.92066 1.24937 0.95620 0.97618 0.96385 1.69964 1.38354 1.09121 1.36496 0.86547 0.79910 0.79130 0.82078 1.20985 1.21420 1.19866 1.18887 0.90146 0.92890 0.92908 1.22297 0.97569 1.00560 0.97645 1.20981 0.98903 0.98680 0.95113 1.20901 0.93234 1.01957 0.99961 1.20873 0.95803 1.00571 0.96542 1.19741 0.95403 0.98264 0.94526 1.20464 0.90020 0.88971 1.01404 1.58424 1.21240 1.32835 1.22852 0.92411 0.91009 0.93401 0.88982 0.93193 0.92417 0.93419 0.98726 0.94657 0.93129 0.85264 0.87012 0.87022 0.87017 0.96993 0.89436 0.85707 0.85161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.53 7.48 37.16 0.28 -3.25 16 2 C 0.09 1.67 2.82 -67.71 -0.19 1.48 16 3 C -0.14 -2.28 8.83 37.16 0.33 -1.95 16 4 N -0.49 -10.42 3.67 -164.92 -0.61 -11.02 16 5 C 0.20 5.27 4.07 -4.98 -0.02 5.25 16 6 C -0.49 -13.85 8.60 -34.44 -0.30 -14.14 16 7 H 0.06 1.70 7.06 -52.48 -0.37 1.33 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 10 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 14 C 0.15 2.83 3.16 -83.79 -0.27 2.57 16 15 C -0.16 -2.94 7.01 -39.38 -0.28 -3.22 16 16 C -0.12 -1.84 10.04 -39.61 -0.40 -2.24 16 17 C -0.14 -2.05 10.04 -39.55 -0.40 -2.44 16 18 C -0.12 -1.76 9.66 -39.61 -0.38 -2.15 16 19 C -0.08 -1.33 5.28 -104.42 -0.55 -1.88 16 20 C 0.12 1.92 6.54 -4.98 -0.03 1.89 16 21 N -0.82 -13.47 9.61 -11.41 -0.11 -13.58 16 22 H 0.06 0.97 5.34 -51.93 -0.28 0.70 16 23 H 0.07 1.47 5.55 -51.93 -0.29 1.18 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.09 1.92 6.85 -51.93 -0.36 1.57 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.90 7.09 -51.93 -0.37 0.54 16 28 H 0.05 0.76 7.13 -51.93 -0.37 0.39 16 29 H 0.00 -0.13 5.22 -51.93 -0.27 -0.40 16 30 H 0.04 1.04 8.04 -51.93 -0.42 0.62 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.13 2.44 4.95 -52.48 -0.26 2.18 16 33 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 35 H 0.11 1.38 8.04 -52.49 -0.42 0.96 16 36 H 0.01 0.16 8.01 -51.93 -0.42 -0.25 16 37 H 0.09 1.50 6.60 -51.93 -0.34 1.16 16 38 H 0.33 4.98 8.98 -39.29 -0.35 4.63 16 39 H 0.34 4.71 9.08 -39.29 -0.36 4.36 16 LS Contribution 305.06 15.07 4.60 4.60 Total: -1.00 -30.29 305.06 -8.40 -38.69 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -5.69 Total: 9.25 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -2.30 Total: -18.61 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: 0.02 Total: -50.83 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.29 -8.40 -38.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723187974.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.641 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds