Wall clock time and date at job start Mon Mar 30 2020 06:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47332 * 2 1 4 4 N 1.46902 * 109.46783 * 240.00326 * 2 1 3 5 5 C 1.46899 * 110.99945 * 298.78173 * 4 2 1 6 6 C 1.50698 * 109.47494 * 292.35634 * 5 4 2 7 7 H 1.08003 * 119.99819 * 4.43805 * 6 5 4 8 8 C 1.37875 * 120.00339 * 184.42859 * 6 5 4 9 9 N 1.31515 * 119.99872 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00152 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47353 * 90.00021 * 10 8 6 12 12 H 1.48503 * 109.46945 * 210.00161 * 10 8 6 13 13 H 1.48500 * 109.47043 * 329.99956 * 10 8 6 14 14 C 1.39675 * 111.00179 * 62.74067 * 4 2 1 15 15 C 1.38930 * 120.07133 * 293.01545 * 14 4 2 16 16 C 1.38091 * 119.92506 * 179.97438 * 15 14 4 17 17 C 1.38303 * 120.06970 * 0.02882 * 16 15 14 18 18 C 1.38259 * 120.15555 * 359.97438 * 17 16 15 19 19 C 1.38130 * 120.07361 * 359.74163 * 18 17 16 20 20 C 1.50693 * 120.03971 * 180.27767 * 19 18 17 21 21 N 1.46904 * 109.47118 * 260.25621 * 20 19 18 22 22 H 1.09004 * 109.46987 * 51.48895 * 1 2 3 23 23 H 1.08994 * 109.47207 * 171.49186 * 1 2 3 24 24 H 1.09001 * 109.47074 * 291.49271 * 1 2 3 25 25 H 1.08994 * 109.47099 * 120.00383 * 2 1 3 26 26 H 1.08998 * 109.46752 * 61.44275 * 3 2 1 27 27 H 1.08991 * 109.46743 * 181.44526 * 3 2 1 28 28 H 1.09002 * 109.46839 * 301.44961 * 3 2 1 29 29 H 1.08999 * 109.47263 * 52.36055 * 5 4 2 30 30 H 1.09006 * 109.46959 * 172.35565 * 5 4 2 31 31 H 0.97003 * 120.00186 * 179.97438 * 9 8 6 32 32 H 1.08007 * 120.04004 * 359.96343 * 15 14 4 33 33 H 1.08002 * 119.95975 * 180.02562 * 16 15 14 34 34 H 1.07998 * 119.92034 * 179.97438 * 17 16 15 35 35 H 1.07999 * 119.96807 * 180.02562 * 18 17 16 36 36 H 1.09002 * 109.47137 * 20.25495 * 20 19 18 37 37 H 1.08998 * 109.47523 * 140.25400 * 20 19 18 38 38 H 1.00899 * 110.99642 * 56.04930 * 21 20 19 39 39 H 1.00907 * 110.99720 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 1.5725 -2.0916 -1.2190 6 6 2.2493 -2.8509 -0.1071 7 1 2.8865 -2.3302 0.5924 8 6 2.0550 -4.2102 0.0174 9 7 1.2793 -4.8443 -0.8345 10 14 2.8934 -5.1512 1.3962 11 1 2.0128 -5.1668 2.5917 12 1 3.1554 -6.5451 0.9561 13 1 4.1786 -4.4897 1.7367 14 6 1.6233 -0.0240 -2.3602 15 6 0.2794 0.0299 -2.7080 16 6 -0.1091 0.6920 -3.8559 17 6 0.8382 1.3004 -4.6592 18 6 2.1765 1.2486 -4.3160 19 6 2.5713 0.5930 -3.1661 20 6 4.0296 0.5423 -2.7895 21 7 4.5925 -0.7558 -3.1847 22 1 -0.3633 0.6399 -0.8042 23 1 -0.3633 -1.0163 -0.1520 24 1 -0.3633 0.3765 0.9562 25 1 1.8933 -0.5139 0.8899 26 1 1.6980 1.9488 0.9026 27 1 3.1297 1.4425 -0.0259 28 1 1.6556 1.9638 -0.8767 29 1 0.4921 -2.1298 -1.0799 30 1 1.8316 -2.5425 -2.1770 31 1 1.1428 -5.8007 -0.7472 32 1 -0.4608 -0.4455 -2.0814 33 1 -1.1538 0.7347 -4.1266 34 1 0.5317 1.8173 -5.5566 35 1 2.9136 1.7251 -4.9453 36 1 4.5651 1.3417 -3.3018 37 1 4.1312 0.6695 -1.7118 38 1 4.4529 -0.9257 -4.1694 39 1 5.5703 -0.8147 -2.9423 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723187974.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:14 Heat of formation + Delta-G solvation = 21.644800 kcal Electronic energy + Delta-G solvation = -19012.207029 eV Core-core repulsion = 16340.154271 eV Total energy + Delta-G solvation = -2672.052758 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.26463 -38.10266 -35.56592 -34.82202 -32.65192 -31.45341 -30.66876 -28.39128 -27.76499 -25.54269 -24.29589 -23.04623 -22.14054 -20.45174 -18.27634 -17.42570 -16.98705 -16.85976 -16.40235 -16.28499 -15.66982 -15.16249 -15.07808 -14.64127 -14.45822 -13.94742 -13.80621 -13.46594 -13.16289 -13.02043 -12.88986 -12.76939 -12.63187 -12.39655 -12.29070 -11.94707 -11.87983 -11.69096 -11.46446 -11.10395 -10.54542 -9.64057 -9.34081 -9.24436 -8.88355 -8.13026 -6.20946 0.54196 0.56297 1.41098 1.42964 1.54317 2.43937 2.90967 3.18275 3.34609 3.99135 4.06071 4.11977 4.15427 4.28111 4.32814 4.46658 4.50954 4.61820 4.74333 4.76439 4.79572 4.92188 4.96339 5.02898 5.08645 5.24748 5.29216 5.33491 5.45812 5.51723 5.61244 5.66822 5.72037 5.89180 6.14129 6.21683 6.45124 6.50710 6.80776 6.93186 7.04195 7.46689 8.97687 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.022766 B = 0.007611 C = 0.007218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.635982 B = 3677.896655 C = 3878.478435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.081 3.919 3 C -0.128 4.128 4 N -0.488 5.488 5 C 0.228 3.772 6 C -0.507 4.507 7 H 0.059 0.941 8 C 0.001 3.999 9 N -0.936 5.936 10 Si 0.965 3.035 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.114 3.886 15 C -0.182 4.182 16 C -0.120 4.120 17 C -0.132 4.132 18 C -0.113 4.113 19 C -0.088 4.088 20 C 0.125 3.875 21 N -0.848 5.848 22 H 0.069 0.931 23 H 0.036 0.964 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.049 0.951 29 H -0.028 1.028 30 H -0.011 1.011 31 H 0.261 0.739 32 H 0.110 0.890 33 H 0.135 0.865 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.044 0.956 37 H 0.069 0.931 38 H 0.337 0.663 39 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.733 14.725 -5.002 15.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.026 4.026 3 C -0.185 4.185 4 N -0.208 5.208 5 C 0.104 3.896 6 C -0.545 4.545 7 H 0.077 0.923 8 C -0.196 4.196 9 N -0.577 5.577 10 Si 0.790 3.210 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.191 1.191 14 C 0.019 3.981 15 C -0.202 4.202 16 C -0.139 4.139 17 C -0.150 4.150 18 C -0.132 4.132 19 C -0.089 4.089 20 C -0.005 4.005 21 N -0.379 5.379 22 H 0.088 0.912 23 H 0.055 0.945 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.068 0.932 29 H -0.010 1.010 30 H 0.008 0.992 31 H 0.070 0.930 32 H 0.128 0.872 33 H 0.153 0.847 34 H 0.168 0.832 35 H 0.163 0.837 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.150 0.850 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.697 14.241 -4.472 15.023 hybrid contribution -0.231 -0.716 0.035 0.753 sum 1.467 13.525 -4.437 14.309 Atomic orbital electron populations 1.22714 0.98182 1.00928 1.02489 1.21643 0.92685 0.95174 0.93100 1.21755 1.01194 0.93792 1.01774 1.59898 1.59191 1.02114 0.99644 1.19225 0.91897 0.83255 0.95256 1.21381 1.27797 0.92939 1.12396 0.92306 1.25835 0.96220 0.98677 0.98903 1.70104 1.39784 1.09427 1.38400 0.85448 0.79037 0.77506 0.78985 1.19935 1.21027 1.19069 1.19019 0.91272 0.94789 0.93044 1.22233 0.96925 1.01950 0.99099 1.21273 1.00662 0.97875 0.94107 1.21350 0.92684 1.00504 1.00422 1.21256 0.96940 0.99362 0.95651 1.19965 0.95558 0.98409 0.94994 1.20415 0.89747 0.89634 1.00679 1.58385 1.22265 1.33777 1.23520 0.91242 0.94521 0.91362 0.91477 0.90807 0.92356 0.93186 1.01019 0.99238 0.93031 0.87209 0.84735 0.83236 0.83661 0.93792 0.91269 0.85019 0.83989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.82 7.48 71.98 0.54 -6.28 16 2 C 0.08 3.17 2.82 44.92 0.13 3.30 16 3 C -0.13 -3.92 8.83 71.98 0.64 -3.29 16 4 N -0.49 -21.56 3.67 -675.70 -2.48 -24.04 16 5 C 0.23 12.59 4.07 85.56 0.35 12.94 16 6 C -0.51 -29.50 8.60 25.60 0.22 -29.28 16 7 H 0.06 3.38 7.06 -2.91 -0.02 3.36 16 8 C 0.00 0.05 5.46 84.65 0.46 0.51 16 9 N -0.94 -58.15 13.29 21.45 0.28 -57.86 16 10 Si 0.97 45.79 29.54 68.60 2.03 47.81 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 13 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 14 C 0.11 4.43 3.16 38.21 0.12 4.55 16 15 C -0.18 -6.74 7.01 22.40 0.16 -6.59 16 16 C -0.12 -3.55 10.04 22.25 0.22 -3.32 16 17 C -0.13 -3.30 10.04 22.29 0.22 -3.08 16 18 C -0.11 -2.98 9.66 22.25 0.22 -2.76 16 19 C -0.09 -2.89 5.28 -19.74 -0.10 -2.99 16 20 C 0.13 3.79 6.54 85.55 0.56 4.35 16 21 N -0.85 -27.35 9.61 -190.01 -1.83 -29.18 16 22 H 0.07 2.38 5.34 -2.38 -0.01 2.37 16 23 H 0.04 1.59 5.55 -2.39 -0.01 1.58 16 24 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.07 2.91 6.85 -2.39 -0.02 2.89 16 26 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.06 1.77 7.09 -2.39 -0.02 1.76 16 28 H 0.05 1.51 7.13 -2.39 -0.02 1.50 16 29 H -0.03 -1.61 5.22 -2.39 -0.01 -1.63 16 30 H -0.01 -0.67 8.04 -2.38 -0.02 -0.69 16 31 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 32 H 0.11 4.39 4.95 -2.91 -0.01 4.38 16 33 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16 34 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 35 H 0.15 2.85 8.04 -2.91 -0.02 2.83 16 36 H 0.04 1.05 8.01 -2.39 -0.02 1.03 16 37 H 0.07 2.33 6.60 -2.39 -0.02 2.32 16 38 H 0.34 9.91 8.98 -89.69 -0.81 9.10 16 39 H 0.35 9.53 9.08 -89.69 -0.81 8.72 16 Total: -1.00 -68.31 305.06 1.18 -67.14 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: -0.56 Total: 28.08 kcal Atomic # 6 Polarization: -35.67 SS G_CDS: 3.73 Total: -31.94 kcal Atomic # 7 Polarization: -107.07 SS G_CDS: -4.02 Total: -111.09 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -68.31 1.18 -67.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723187974.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.784 kcal (2) G-P(sol) polarization free energy of solvation -68.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds