Wall clock time and date at job start Mon Mar 30 2020 05:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38673 * 120.78638 * 2 1 4 4 C 1.38190 * 119.16069 * 180.02562 * 3 2 1 5 5 C 1.50698 * 119.61635 * 179.97438 * 4 3 2 6 6 N 1.31886 * 120.76405 * 0.02562 * 4 3 2 7 7 C 1.31849 * 121.72439 * 359.97438 * 6 4 3 8 8 C 1.50708 * 119.61559 * 180.02562 * 7 6 4 9 9 N 1.46504 * 109.46720 * 274.99985 * 8 7 6 10 10 C 1.36932 * 120.00031 * 269.99563 * 9 8 7 11 11 H 1.07996 * 120.00477 * 335.19051 * 10 9 8 12 12 C 1.38819 * 119.99935 * 155.18454 * 10 9 8 13 13 N 1.31624 * 119.99862 * 337.62076 * 12 10 9 14 14 Si 1.86799 * 120.00022 * 157.61536 * 12 10 9 15 15 H 1.48489 * 109.46981 * 85.00118 * 14 12 10 16 16 H 1.48499 * 109.47044 * 205.00568 * 14 12 10 17 17 H 1.48505 * 109.46822 * 324.99866 * 14 12 10 18 18 C 1.46500 * 119.99675 * 90.00201 * 9 8 7 19 19 C 1.52994 * 109.47149 * 294.24656 * 18 9 8 20 20 C 1.53001 * 109.47258 * 54.24875 * 18 9 8 21 21 C 1.38228 * 120.76901 * 0.27986 * 7 6 4 22 22 H 1.09007 * 109.46853 * 90.00361 * 1 2 3 23 23 H 1.08995 * 109.47199 * 210.00096 * 1 2 3 24 24 H 1.08996 * 109.47372 * 330.00449 * 1 2 3 25 25 H 1.08002 * 120.42516 * 359.97438 * 3 2 1 26 26 H 1.08995 * 109.47380 * 270.02308 * 5 4 3 27 27 H 1.09003 * 109.47062 * 30.02059 * 5 4 3 28 28 H 1.08995 * 109.46768 * 150.01783 * 5 4 3 29 29 H 1.09003 * 109.46857 * 155.00384 * 8 7 6 30 30 H 1.08994 * 109.46871 * 34.99825 * 8 7 6 31 31 H 0.96997 * 119.99319 * 179.97438 * 13 12 10 32 32 H 1.09002 * 109.46739 * 174.24426 * 18 9 8 33 33 H 1.08994 * 109.47651 * 59.99950 * 19 18 9 34 34 H 1.09002 * 109.47095 * 180.02562 * 19 18 9 35 35 H 1.09007 * 109.47374 * 299.99656 * 19 18 9 36 36 H 1.09002 * 109.47377 * 59.99568 * 20 18 9 37 37 H 1.09002 * 109.47335 * 179.97438 * 20 18 9 38 38 H 1.09002 * 109.46879 * 299.99465 * 20 18 9 39 39 H 1.07994 * 120.42385 * 179.70338 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1521 -0.0005 5 6 4.3797 2.4406 -0.0011 6 7 4.2403 0.0002 -0.0016 7 6 3.5983 -1.1515 -0.0016 8 6 4.3801 -2.4400 -0.0022 9 7 4.7358 -2.7946 -1.3784 10 6 3.8920 -3.5732 -2.1247 11 1 3.2015 -4.2439 -1.6352 12 6 3.9241 -3.5003 -3.5106 13 7 4.4046 -2.4271 -4.1022 14 14 3.2856 -4.9253 -4.5359 15 1 1.8163 -4.7940 -4.7051 16 1 3.9409 -4.9090 -5.8684 17 1 3.5925 -6.2057 -3.8491 18 6 5.9943 -2.3163 -1.9561 19 6 5.9494 -0.7925 -2.0857 20 6 7.1577 -2.7168 -1.0467 21 6 2.2166 -1.1909 -0.0064 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3634 0.8900 0.5137 25 1 1.6967 2.1378 -0.0004 26 1 4.5674 2.7512 -1.0289 27 1 3.8076 3.2128 0.5131 28 1 5.3294 2.2896 0.5121 29 1 3.7724 -3.2338 0.4321 30 1 5.2885 -2.3140 0.5869 31 1 4.4273 -2.3764 -5.0706 32 1 6.1338 -2.7609 -2.9416 33 1 5.8098 -0.3480 -1.1004 34 1 6.8855 -0.4367 -2.5160 35 1 5.1206 -0.5072 -2.7337 36 1 7.1897 -3.8024 -0.9543 37 1 8.0941 -2.3613 -1.4768 38 1 7.0182 -2.2722 -0.0613 39 1 1.6965 -2.1373 -0.0112 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723614606.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:08 Heat of formation + Delta-G solvation = 48.157565 kcal Electronic energy + Delta-G solvation = -18918.847061 eV Core-core repulsion = 16247.943983 eV Total energy + Delta-G solvation = -2670.903078 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.70732 -36.44931 -33.57496 -32.65681 -31.72875 -29.99648 -27.49977 -27.16659 -25.84710 -25.65049 -23.06611 -21.13088 -20.39644 -18.92044 -16.76240 -15.81105 -15.47815 -14.79876 -14.31656 -14.02595 -13.92437 -13.49412 -13.02070 -12.80554 -12.45877 -12.41567 -12.21168 -11.96653 -11.83597 -11.67551 -11.35897 -11.16951 -10.95172 -10.82796 -10.74883 -10.50168 -10.05704 -9.81610 -9.66200 -9.37950 -8.79176 -8.47095 -8.30467 -8.04914 -6.72546 -5.80195 -3.16714 1.84761 1.95110 3.36452 3.44200 3.46806 4.36731 4.55234 4.90242 5.09488 5.23571 5.38498 5.58917 5.61189 5.66455 5.78732 5.81762 5.94106 6.01071 6.05036 6.10384 6.23204 6.36173 6.42462 6.53621 6.57770 6.63519 6.69811 6.87666 6.95639 6.98319 7.05480 7.27305 7.31158 7.53037 7.74734 7.95136 8.05293 8.45117 8.84480 9.22321 9.85225 10.37910 11.25271 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019576 B = 0.008860 C = 0.007182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.006169 B = 3159.401010 C = 3897.759881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.048 4.048 3 C -0.199 4.199 4 C 0.121 3.879 5 C -0.097 4.097 6 N -0.472 5.472 7 C 0.142 3.858 8 C 0.183 3.817 9 N -0.567 5.567 10 C -0.256 4.256 11 H 0.068 0.932 12 C 0.006 3.994 13 N -0.884 5.884 14 Si 0.897 3.103 15 H -0.288 1.288 16 H -0.290 1.290 17 H -0.279 1.279 18 C 0.184 3.816 19 C -0.163 4.163 20 C -0.163 4.163 21 C -0.165 4.165 22 H 0.071 0.929 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.118 0.882 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.253 0.747 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.013 0.987 35 H 0.061 0.939 36 H 0.043 0.957 37 H 0.039 0.961 38 H 0.042 0.958 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.666 5.775 8.062 10.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.056 4.056 3 C -0.220 4.220 4 C -0.017 4.017 5 C -0.155 4.155 6 N -0.184 5.184 7 C 0.001 3.999 8 C 0.056 3.944 9 N -0.286 5.286 10 C -0.386 4.386 11 H 0.086 0.914 12 C -0.194 4.194 13 N -0.526 5.526 14 Si 0.727 3.273 15 H -0.215 1.215 16 H -0.216 1.216 17 H -0.205 1.205 18 C 0.078 3.922 19 C -0.222 4.222 20 C -0.221 4.221 21 C -0.186 4.186 22 H 0.089 0.911 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.136 0.864 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.033 0.967 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.711 5.757 7.853 9.886 hybrid contribution -1.460 -0.499 -0.996 1.836 sum -3.171 5.258 6.857 9.204 Atomic orbital electron populations 1.20738 0.91300 1.02243 1.02367 1.20181 0.95948 0.93343 0.96147 1.21504 0.94861 0.97784 1.07811 1.21141 0.91007 0.94177 0.95425 1.20611 0.99839 0.92491 1.02520 1.67310 1.40332 0.97564 1.13191 1.22757 0.91636 0.95311 0.90174 1.20020 0.96066 0.88742 0.89618 1.44291 1.18142 1.56412 1.09754 1.19198 1.17624 1.13673 0.88108 0.91425 1.24988 1.00284 0.96774 0.97350 1.70128 1.48830 1.24951 1.08706 0.86407 0.78294 0.82929 0.79716 1.21464 1.21594 1.20479 1.20300 0.82388 0.93164 0.96301 1.22446 0.99185 0.98087 1.02494 1.22317 0.99103 1.00218 1.00485 1.21728 0.95374 0.97838 1.03668 0.91050 0.91533 0.91893 0.86389 0.90982 0.91687 0.90984 0.92327 0.92250 0.93710 0.89165 0.90889 0.96742 0.91976 0.93787 0.94197 0.93886 0.85776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 10.06 36.01 0.36 -1.09 16 2 C -0.05 -0.84 5.92 -104.32 -0.62 -1.45 16 3 C -0.20 -3.34 9.45 -39.44 -0.37 -3.71 16 4 C 0.12 2.18 6.78 -82.59 -0.56 1.62 16 5 C -0.10 -1.37 10.17 36.00 0.37 -1.00 16 6 N -0.47 -9.74 6.91 -5.74 -0.04 -9.78 16 7 C 0.14 2.99 5.95 -82.58 -0.49 2.50 16 8 C 0.18 3.93 5.57 -5.19 -0.03 3.90 16 9 N -0.57 -14.02 2.42 -167.02 -0.40 -14.43 16 10 C -0.26 -6.87 9.59 -15.06 -0.14 -7.01 16 11 H 0.07 1.77 7.92 -52.49 -0.42 1.35 16 12 C 0.01 0.16 4.77 -17.43 -0.08 0.08 16 13 N -0.88 -25.29 10.16 55.49 0.56 -24.73 16 14 Si 0.90 21.51 29.61 -169.99 -5.03 16.47 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 C 0.18 4.47 2.40 -67.93 -0.16 4.31 16 19 C -0.16 -3.91 8.36 37.15 0.31 -3.60 16 20 C -0.16 -3.32 9.05 37.16 0.34 -2.98 16 21 C -0.17 -3.23 9.43 -39.44 -0.37 -3.61 16 22 H 0.07 0.95 8.14 -51.92 -0.42 0.52 16 23 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 24 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 25 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 1.17 7.94 -51.93 -0.41 0.76 16 30 H 0.06 1.21 6.14 -51.93 -0.32 0.89 16 31 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.09 2.48 5.84 -51.93 -0.30 2.18 16 33 H 0.07 1.68 4.78 -51.93 -0.25 1.43 16 34 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 1.71 7.18 -51.93 -0.37 1.34 16 36 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.04 0.83 6.50 -51.93 -0.34 0.50 16 39 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 311.79 15.07 4.70 4.70 Total: -1.00 -29.70 311.79 -7.86 -37.56 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.19 Total: 2.26 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -1.46 Total: -12.06 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: 0.12 Total: -48.94 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.70 -7.86 -37.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723614606.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.720 kcal (2) G-P(sol) polarization free energy of solvation -29.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds