Wall clock time and date at job start Mon Mar 30 2020 05:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38673 * 120.78638 * 2 1 4 4 C 1.38190 * 119.16069 * 180.02562 * 3 2 1 5 5 C 1.50698 * 119.61635 * 179.97438 * 4 3 2 6 6 N 1.31886 * 120.76405 * 0.02562 * 4 3 2 7 7 C 1.31849 * 121.72439 * 359.97438 * 6 4 3 8 8 C 1.50708 * 119.61559 * 180.02562 * 7 6 4 9 9 N 1.46504 * 109.46720 * 274.99985 * 8 7 6 10 10 C 1.36932 * 120.00031 * 269.99563 * 9 8 7 11 11 H 1.07996 * 120.00477 * 335.19051 * 10 9 8 12 12 C 1.38819 * 119.99935 * 155.18454 * 10 9 8 13 13 N 1.31624 * 119.99862 * 337.62076 * 12 10 9 14 14 Si 1.86799 * 120.00022 * 157.61536 * 12 10 9 15 15 H 1.48489 * 109.46981 * 85.00118 * 14 12 10 16 16 H 1.48499 * 109.47044 * 205.00568 * 14 12 10 17 17 H 1.48505 * 109.46822 * 324.99866 * 14 12 10 18 18 C 1.46500 * 119.99675 * 90.00201 * 9 8 7 19 19 C 1.52994 * 109.47149 * 294.24656 * 18 9 8 20 20 C 1.53001 * 109.47258 * 54.24875 * 18 9 8 21 21 C 1.38228 * 120.76901 * 0.27986 * 7 6 4 22 22 H 1.09007 * 109.46853 * 90.00361 * 1 2 3 23 23 H 1.08995 * 109.47199 * 210.00096 * 1 2 3 24 24 H 1.08996 * 109.47372 * 330.00449 * 1 2 3 25 25 H 1.08002 * 120.42516 * 359.97438 * 3 2 1 26 26 H 1.08995 * 109.47380 * 270.02308 * 5 4 3 27 27 H 1.09003 * 109.47062 * 30.02059 * 5 4 3 28 28 H 1.08995 * 109.46768 * 150.01783 * 5 4 3 29 29 H 1.09003 * 109.46857 * 155.00384 * 8 7 6 30 30 H 1.08994 * 109.46871 * 34.99825 * 8 7 6 31 31 H 0.96997 * 119.99319 * 179.97438 * 13 12 10 32 32 H 1.09002 * 109.46739 * 174.24426 * 18 9 8 33 33 H 1.08994 * 109.47651 * 59.99950 * 19 18 9 34 34 H 1.09002 * 109.47095 * 180.02562 * 19 18 9 35 35 H 1.09007 * 109.47374 * 299.99656 * 19 18 9 36 36 H 1.09002 * 109.47377 * 59.99568 * 20 18 9 37 37 H 1.09002 * 109.47335 * 179.97438 * 20 18 9 38 38 H 1.09002 * 109.46879 * 299.99465 * 20 18 9 39 39 H 1.07994 * 120.42385 * 179.70338 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5981 1.1521 -0.0005 5 6 4.3797 2.4406 -0.0011 6 7 4.2403 0.0002 -0.0016 7 6 3.5983 -1.1515 -0.0016 8 6 4.3801 -2.4400 -0.0022 9 7 4.7358 -2.7946 -1.3784 10 6 3.8920 -3.5732 -2.1247 11 1 3.2015 -4.2439 -1.6352 12 6 3.9241 -3.5003 -3.5106 13 7 4.4046 -2.4271 -4.1022 14 14 3.2856 -4.9253 -4.5359 15 1 1.8163 -4.7940 -4.7051 16 1 3.9409 -4.9090 -5.8684 17 1 3.5925 -6.2057 -3.8491 18 6 5.9943 -2.3163 -1.9561 19 6 5.9494 -0.7925 -2.0857 20 6 7.1577 -2.7168 -1.0467 21 6 2.2166 -1.1909 -0.0064 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3634 0.8900 0.5137 25 1 1.6967 2.1378 -0.0004 26 1 4.5674 2.7512 -1.0289 27 1 3.8076 3.2128 0.5131 28 1 5.3294 2.2896 0.5121 29 1 3.7724 -3.2338 0.4321 30 1 5.2885 -2.3140 0.5869 31 1 4.4273 -2.3764 -5.0706 32 1 6.1338 -2.7609 -2.9416 33 1 5.8098 -0.3480 -1.1004 34 1 6.8855 -0.4367 -2.5160 35 1 5.1206 -0.5072 -2.7337 36 1 7.1897 -3.8024 -0.9543 37 1 8.0941 -2.3613 -1.4768 38 1 7.0182 -2.2722 -0.0613 39 1 1.6965 -2.1373 -0.0112 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723614606.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:08 Heat of formation + Delta-G solvation = 32.701591 kcal Electronic energy + Delta-G solvation = -18919.517282 eV Core-core repulsion = 16247.943983 eV Total energy + Delta-G solvation = -2671.573300 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.14689 -38.26788 -34.89377 -34.22861 -33.64271 -31.74059 -28.94692 -28.39457 -27.60015 -27.33725 -24.96190 -22.65623 -21.78642 -20.76940 -18.63702 -17.30722 -16.90136 -16.69340 -15.80584 -15.76182 -15.60838 -15.13561 -14.33253 -14.21656 -14.09171 -13.68665 -13.63952 -13.42338 -13.31785 -13.12782 -12.90769 -12.88649 -12.67773 -12.55338 -12.31010 -12.26889 -11.94787 -11.65231 -11.53697 -11.24739 -10.40027 -10.19857 -9.92088 -9.52044 -8.68223 -7.84061 -5.23284 0.41093 0.54833 1.44684 1.48092 1.56552 2.51895 2.96082 3.29825 3.55427 3.80490 3.88846 3.97035 4.32937 4.41240 4.54259 4.62245 4.68097 4.74584 4.77054 4.79830 4.83360 4.85700 4.91458 5.00207 5.01666 5.10332 5.15127 5.28909 5.31143 5.37493 5.44669 5.49761 5.58212 5.66253 5.92617 6.08474 6.14885 6.42681 7.19674 7.37643 7.91324 8.39295 9.19734 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019576 B = 0.008860 C = 0.007182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.006169 B = 3159.401010 C = 3897.759881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.052 4.052 3 C -0.196 4.196 4 C 0.103 3.897 5 C -0.093 4.093 6 N -0.496 5.496 7 C 0.118 3.882 8 C 0.185 3.815 9 N -0.581 5.581 10 C -0.260 4.260 11 H 0.069 0.931 12 C -0.044 4.044 13 N -0.914 5.914 14 Si 0.957 3.043 15 H -0.287 1.287 16 H -0.297 1.297 17 H -0.272 1.272 18 C 0.182 3.818 19 C -0.144 4.144 20 C -0.149 4.149 21 C -0.187 4.187 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.091 0.909 25 H 0.155 0.845 26 H 0.071 0.929 27 H 0.099 0.901 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.245 0.755 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.022 0.978 35 H 0.020 0.980 36 H 0.044 0.956 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.526 6.830 9.326 12.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.060 4.060 3 C -0.216 4.216 4 C -0.035 4.035 5 C -0.150 4.150 6 N -0.208 5.208 7 C -0.021 4.021 8 C 0.058 3.942 9 N -0.301 5.301 10 C -0.391 4.391 11 H 0.086 0.914 12 C -0.241 4.241 13 N -0.559 5.559 14 Si 0.785 3.215 15 H -0.214 1.214 16 H -0.223 1.223 17 H -0.197 1.197 18 C 0.076 3.924 19 C -0.203 4.203 20 C -0.208 4.208 21 C -0.208 4.208 22 H 0.091 0.909 23 H 0.094 0.906 24 H 0.109 0.891 25 H 0.172 0.828 26 H 0.090 0.910 27 H 0.117 0.883 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.041 0.959 35 H 0.039 0.961 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.581 6.811 9.155 11.699 hybrid contribution -1.240 -0.718 -1.264 1.911 sum -3.822 6.093 7.891 10.677 Atomic orbital electron populations 1.20804 0.88323 1.04214 1.02949 1.20673 0.98188 0.92646 0.94516 1.21968 0.94592 0.99181 1.05832 1.21867 0.92378 0.94666 0.94584 1.20692 0.99975 0.91400 1.02973 1.67227 1.41197 0.98216 1.14183 1.22599 0.92361 0.95335 0.91839 1.20027 0.96743 0.89587 0.87870 1.44338 1.18287 1.57082 1.10392 1.19452 1.17199 1.13873 0.88545 0.91361 1.25630 1.01441 0.98659 0.98345 1.70295 1.51000 1.26501 1.08089 0.85468 0.77479 0.80611 0.77913 1.21368 1.22302 1.19706 1.20222 0.83803 0.92838 0.95554 1.22258 0.97748 0.98263 1.02022 1.22142 0.98140 1.00363 1.00143 1.21877 0.95166 0.99047 1.04705 0.90933 0.90569 0.89051 0.82751 0.90998 0.88266 0.90983 0.91614 0.91472 0.94614 0.92826 0.89837 0.95932 0.96112 0.93671 0.92456 0.92797 0.85888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.51 10.06 71.24 0.72 -1.79 16 2 C -0.05 -1.71 5.92 -19.67 -0.12 -1.82 16 3 C -0.20 -6.03 9.45 22.36 0.21 -5.82 16 4 C 0.10 3.54 6.78 42.54 0.29 3.83 16 5 C -0.09 -2.39 10.17 71.24 0.72 -1.67 16 6 N -0.50 -20.18 6.91 -172.07 -1.19 -21.37 16 7 C 0.12 4.99 5.95 42.56 0.25 5.24 16 8 C 0.18 7.93 5.57 85.63 0.48 8.41 16 9 N -0.58 -29.11 2.42 -682.33 -1.65 -30.76 16 10 C -0.26 -14.17 9.59 84.04 0.81 -13.36 16 11 H 0.07 3.61 7.92 -2.91 -0.02 3.59 16 12 C -0.04 -2.47 4.77 84.86 0.40 -2.06 16 13 N -0.91 -54.09 10.16 21.65 0.22 -53.87 16 14 Si 0.96 45.15 29.61 68.60 2.03 47.18 16 15 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 16 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 17 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 18 C 0.18 8.94 2.40 44.99 0.11 9.04 16 19 C -0.14 -7.00 8.36 71.98 0.60 -6.40 16 20 C -0.15 -5.97 9.05 71.98 0.65 -5.32 16 21 C -0.19 -7.26 9.43 22.36 0.21 -7.05 16 22 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 23 H 0.08 1.65 8.10 -2.39 -0.02 1.63 16 24 H 0.09 1.64 8.10 -2.39 -0.02 1.62 16 25 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 26 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.10 1.84 8.08 -2.39 -0.02 1.82 16 28 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.07 2.65 7.94 -2.39 -0.02 2.63 16 30 H 0.07 2.71 6.14 -2.39 -0.01 2.70 16 31 H 0.24 14.23 8.31 -92.71 -0.77 13.46 16 32 H 0.05 3.04 5.84 -2.39 -0.01 3.03 16 33 H 0.08 3.85 4.78 -2.39 -0.01 3.84 16 34 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.02 1.14 7.18 -2.38 -0.02 1.12 16 36 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.05 2.02 6.50 -2.39 -0.02 2.00 16 39 H 0.12 4.63 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -65.40 311.79 5.76 -59.64 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 1.01 Total: 17.96 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: 5.34 Total: -18.78 kcal Atomic # 7 Polarization: -103.38 SS G_CDS: -2.62 Total: -106.00 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -65.40 5.76 -59.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723614606.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.344 kcal (2) G-P(sol) polarization free energy of solvation -65.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds