Wall clock time and date at job start Mon Mar 30 2020 05:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38229 * 120.42292 * 2 1 4 4 N 1.31848 * 120.76985 * 180.02562 * 3 2 1 5 5 C 1.31889 * 121.72478 * 359.97438 * 4 3 2 6 6 C 1.50695 * 119.62036 * 180.02562 * 5 4 3 7 7 N 1.46902 * 109.47106 * 269.97662 * 6 5 4 8 8 C 1.46896 * 111.00387 * 180.02562 * 7 6 5 9 9 C 1.52995 * 109.47304 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47333 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47712 * 180.02562 * 10 9 8 12 12 H 1.08006 * 119.99673 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00462 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00297 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 119.99920 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47509 * 89.99958 * 15 13 11 17 17 H 1.48499 * 109.47338 * 210.00393 * 15 13 11 18 18 H 1.48507 * 109.47311 * 330.00013 * 15 13 11 19 19 C 1.38184 * 120.76144 * 359.97438 * 5 4 3 20 20 C 1.50703 * 120.41590 * 179.97438 * 19 5 4 21 21 C 1.38629 * 120.42141 * 180.25054 * 2 1 3 22 22 H 1.09006 * 109.47097 * 90.00373 * 1 2 3 23 23 H 1.08994 * 109.47498 * 210.00118 * 1 2 3 24 24 H 1.09002 * 109.47199 * 330.00705 * 1 2 3 25 25 H 1.08006 * 119.61121 * 359.97438 * 3 2 1 26 26 H 1.09000 * 109.46940 * 29.97482 * 6 5 4 27 27 H 1.08996 * 109.47332 * 149.97748 * 6 5 4 28 28 H 1.00901 * 110.99924 * 56.04020 * 7 6 5 29 29 H 1.08999 * 109.46629 * 299.99712 * 8 7 6 30 30 H 1.09000 * 109.47071 * 59.99658 * 8 7 6 31 31 H 1.09002 * 109.47460 * 299.99743 * 9 8 7 32 32 H 1.09006 * 109.47078 * 60.00130 * 9 8 7 33 33 H 1.09005 * 109.47275 * 300.00263 * 10 9 8 34 34 H 1.09002 * 109.47423 * 59.99774 * 10 9 8 35 35 H 0.96997 * 120.00564 * 179.97438 * 14 13 11 36 36 H 1.09002 * 109.47152 * 90.00137 * 20 19 5 37 37 H 1.09001 * 109.46980 * 330.00238 * 20 19 5 38 38 H 1.09004 * 109.47113 * 210.00219 * 20 19 5 39 39 H 1.08001 * 120.78653 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2257 0.0823 -0.0005 6 6 5.7312 0.1468 -0.0005 7 7 6.2205 0.1672 -1.3855 8 6 7.6876 0.2294 -1.4248 9 6 8.1584 0.2496 -2.8804 10 6 9.6864 0.3150 -2.9213 11 6 10.1503 0.3356 -4.3550 12 1 9.4274 0.3047 -5.1569 13 6 11.4974 0.3929 -4.6431 14 7 11.9021 0.4103 -5.8943 15 14 12.7476 0.4457 -3.2563 16 1 13.1384 -0.9391 -2.8890 17 1 13.9486 1.1975 -3.7008 18 1 12.1499 1.1207 -2.0763 19 6 3.5948 -1.1471 0.0005 20 6 4.4026 -2.4192 -0.0001 21 6 2.2089 -1.1954 -0.0052 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3634 0.8901 0.5137 25 1 1.6674 2.1276 -0.0004 26 1 6.0561 1.0517 0.5129 27 1 6.1323 -0.7266 0.5136 28 1 5.8118 0.9315 -1.9022 29 1 8.0264 1.1347 -0.9212 30 1 8.1019 -0.6437 -0.9206 31 1 7.8196 -0.6554 -3.3846 32 1 7.7441 1.1230 -3.3842 33 1 10.0250 1.2203 -2.4173 34 1 10.1012 -0.5580 -2.4174 35 1 12.8498 0.4510 -6.0970 36 1 4.5986 -2.7257 1.0274 37 1 5.3481 -2.2489 -0.5150 38 1 3.8455 -3.2032 -0.5131 39 1 1.6887 -2.1419 -0.0090 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724099928.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:57 Heat of formation + Delta-G solvation = 8.783765 kcal Electronic energy + Delta-G solvation = -17079.186439 eV Core-core repulsion = 14406.575984 eV Total energy + Delta-G solvation = -2672.610454 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.59553 -36.65042 -34.35425 -33.73076 -33.04973 -31.36655 -28.63625 -27.57354 -26.39753 -24.43446 -22.65376 -21.95646 -20.91729 -20.01961 -17.19561 -16.74867 -16.31194 -15.44295 -15.07985 -14.60126 -14.32506 -13.97788 -13.84750 -13.43853 -13.32121 -13.02707 -12.82468 -12.63005 -12.54491 -12.40686 -12.35160 -11.74571 -11.57373 -11.26650 -10.91318 -10.76550 -9.93692 -9.73025 -9.68738 -9.63475 -9.48861 -9.13794 -8.79949 -8.50203 -8.23405 -6.00468 -3.98101 0.92327 1.13848 3.33236 3.40366 3.44357 3.53706 4.12509 4.47625 4.48528 4.56261 4.65704 4.71179 4.80706 5.02128 5.22993 5.25285 5.33450 5.37105 5.43014 5.51598 5.56843 5.60812 5.70140 5.78043 5.82766 6.00772 6.08161 6.16381 6.20142 6.55919 6.59601 6.60256 6.95282 7.19383 7.37956 7.46523 7.55998 7.84142 7.89142 8.59014 9.05275 9.62167 11.13192 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.045921 B = 0.003327 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.600113 B = 8414.272520 C = 8495.699034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.140 4.140 3 C 0.090 3.910 4 N -0.475 5.475 5 C 0.126 3.874 6 C 0.106 3.894 7 N -0.683 5.683 8 C 0.057 3.943 9 C -0.099 4.099 10 C -0.013 4.013 11 C -0.518 4.518 12 H 0.071 0.929 13 C 0.064 3.936 14 N -0.905 5.905 15 Si 0.881 3.119 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.266 1.266 19 C -0.108 4.108 20 C -0.117 4.117 21 C -0.083 4.083 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.152 0.848 26 H 0.046 0.954 27 H 0.087 0.913 28 H 0.344 0.656 29 H 0.026 0.974 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.014 0.986 34 H 0.011 0.989 35 H 0.262 0.738 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.400 -2.970 15.540 26.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.142 4.142 3 C -0.067 4.067 4 N -0.183 5.183 5 C -0.012 4.012 6 C -0.024 4.024 7 N -0.315 5.315 8 C -0.071 4.071 9 C -0.137 4.137 10 C -0.051 4.051 11 C -0.556 4.556 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.545 5.545 15 Si 0.708 3.292 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.191 1.191 19 C -0.110 4.110 20 C -0.174 4.174 21 C -0.109 4.109 22 H 0.091 0.909 23 H 0.085 0.915 24 H 0.087 0.913 25 H 0.169 0.831 26 H 0.064 0.936 27 H 0.106 0.894 28 H 0.161 0.839 29 H 0.045 0.955 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.032 0.968 34 H 0.030 0.970 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -20.793 -2.836 15.368 26.010 hybrid contribution 0.368 0.196 0.833 0.931 sum -20.424 -2.640 16.200 26.203 Atomic orbital electron populations 1.20700 0.90347 1.02915 1.02579 1.20908 0.97443 0.94241 1.01596 1.22570 0.89687 0.97380 0.97102 1.67468 1.08297 1.31085 1.11467 1.21057 0.96264 0.87894 0.95954 1.20793 0.87966 1.01761 0.91878 1.60569 1.08202 1.51603 1.11094 1.22177 0.85456 0.99883 0.99630 1.21440 0.97981 1.01629 0.92664 1.19542 0.91529 0.96116 0.97868 1.21161 0.92825 1.50353 0.91295 0.91040 1.25045 0.98549 0.94672 0.95367 1.69917 1.15440 1.51347 1.17753 0.86760 0.80926 0.78409 0.83061 1.20311 1.21463 1.19052 1.20724 0.94213 0.96705 0.99396 1.20848 1.00890 0.93357 1.02306 1.21380 0.93393 0.98124 0.98004 0.90914 0.91477 0.91264 0.83062 0.93626 0.89443 0.83851 0.95531 0.91347 0.91951 0.92996 0.96816 0.97034 0.92794 0.91228 0.89339 0.91471 0.85033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.04 36.00 0.36 -0.30 16 2 C -0.14 -1.31 5.90 -104.48 -0.62 -1.93 16 3 C 0.09 0.98 10.86 -17.55 -0.19 0.79 16 4 N -0.48 -6.36 10.27 -9.47 -0.10 -6.46 16 5 C 0.13 1.63 6.29 -82.59 -0.52 1.11 16 6 C 0.11 1.37 5.17 -4.98 -0.03 1.34 16 7 N -0.68 -10.10 6.45 -115.07 -0.74 -10.84 16 8 C 0.06 0.94 5.69 -3.83 -0.02 0.92 16 9 C -0.10 -2.01 5.41 -26.74 -0.14 -2.15 16 10 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 11 C -0.52 -15.13 9.66 -34.44 -0.33 -15.47 16 12 H 0.07 2.24 7.99 -52.48 -0.42 1.83 16 13 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 14 N -0.91 -28.46 13.96 55.43 0.77 -27.68 16 15 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 18 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 19 C -0.11 -1.21 5.90 -104.48 -0.62 -1.83 16 20 C -0.12 -1.11 9.21 36.01 0.33 -0.78 16 21 C -0.08 -0.81 9.54 -39.28 -0.37 -1.19 16 22 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 24 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 25 H 0.15 1.26 8.06 -52.48 -0.42 0.84 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.09 1.01 6.69 -51.93 -0.35 0.67 16 28 H 0.34 5.23 8.72 -39.29 -0.34 4.89 16 29 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 34 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 35 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.97 6.68 -51.93 -0.35 0.62 16 38 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 39 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 322.65 15.07 4.86 4.86 Total: -1.00 -32.23 322.65 -8.69 -40.91 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -6.46 Total: -0.12 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -2.36 Total: -18.08 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: -0.07 Total: -44.99 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.23 -8.69 -40.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724099928.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.699 kcal (2) G-P(sol) polarization free energy of solvation -32.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds