Wall clock time and date at job start Mon Mar 30 2020 05:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38229 * 120.42292 * 2 1 4 4 N 1.31848 * 120.76985 * 180.02562 * 3 2 1 5 5 C 1.31889 * 121.72478 * 359.97438 * 4 3 2 6 6 C 1.50695 * 119.62036 * 180.02562 * 5 4 3 7 7 N 1.46902 * 109.47106 * 269.97662 * 6 5 4 8 8 C 1.46896 * 111.00387 * 180.02562 * 7 6 5 9 9 C 1.52995 * 109.47304 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47333 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47712 * 180.02562 * 10 9 8 12 12 H 1.08006 * 119.99673 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00462 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00297 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 119.99920 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47509 * 89.99958 * 15 13 11 17 17 H 1.48499 * 109.47338 * 210.00393 * 15 13 11 18 18 H 1.48507 * 109.47311 * 330.00013 * 15 13 11 19 19 C 1.38184 * 120.76144 * 359.97438 * 5 4 3 20 20 C 1.50703 * 120.41590 * 179.97438 * 19 5 4 21 21 C 1.38629 * 120.42141 * 180.25054 * 2 1 3 22 22 H 1.09006 * 109.47097 * 90.00373 * 1 2 3 23 23 H 1.08994 * 109.47498 * 210.00118 * 1 2 3 24 24 H 1.09002 * 109.47199 * 330.00705 * 1 2 3 25 25 H 1.08006 * 119.61121 * 359.97438 * 3 2 1 26 26 H 1.09000 * 109.46940 * 29.97482 * 6 5 4 27 27 H 1.08996 * 109.47332 * 149.97748 * 6 5 4 28 28 H 1.00901 * 110.99924 * 56.04020 * 7 6 5 29 29 H 1.08999 * 109.46629 * 299.99712 * 8 7 6 30 30 H 1.09000 * 109.47071 * 59.99658 * 8 7 6 31 31 H 1.09002 * 109.47460 * 299.99743 * 9 8 7 32 32 H 1.09006 * 109.47078 * 60.00130 * 9 8 7 33 33 H 1.09005 * 109.47275 * 300.00263 * 10 9 8 34 34 H 1.09002 * 109.47423 * 59.99774 * 10 9 8 35 35 H 0.96997 * 120.00564 * 179.97438 * 14 13 11 36 36 H 1.09002 * 109.47152 * 90.00137 * 20 19 5 37 37 H 1.09001 * 109.46980 * 330.00238 * 20 19 5 38 38 H 1.09004 * 109.47113 * 210.00219 * 20 19 5 39 39 H 1.08001 * 120.78653 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2257 0.0823 -0.0005 6 6 5.7312 0.1468 -0.0005 7 7 6.2205 0.1672 -1.3855 8 6 7.6876 0.2294 -1.4248 9 6 8.1584 0.2496 -2.8804 10 6 9.6864 0.3150 -2.9213 11 6 10.1503 0.3356 -4.3550 12 1 9.4274 0.3047 -5.1569 13 6 11.4974 0.3929 -4.6431 14 7 11.9021 0.4103 -5.8943 15 14 12.7476 0.4457 -3.2563 16 1 13.1384 -0.9391 -2.8890 17 1 13.9486 1.1975 -3.7008 18 1 12.1499 1.1207 -2.0763 19 6 3.5948 -1.1471 0.0005 20 6 4.4026 -2.4192 -0.0001 21 6 2.2089 -1.1954 -0.0052 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3634 0.8901 0.5137 25 1 1.6674 2.1276 -0.0004 26 1 6.0561 1.0517 0.5129 27 1 6.1323 -0.7266 0.5136 28 1 5.8118 0.9315 -1.9022 29 1 8.0264 1.1347 -0.9212 30 1 8.1019 -0.6437 -0.9206 31 1 7.8196 -0.6554 -3.3846 32 1 7.7441 1.1230 -3.3842 33 1 10.0250 1.2203 -2.4173 34 1 10.1012 -0.5580 -2.4174 35 1 12.8498 0.4510 -6.0970 36 1 4.5986 -2.7257 1.0274 37 1 5.3481 -2.2489 -0.5150 38 1 3.8455 -3.2032 -0.5131 39 1 1.6887 -2.1419 -0.0090 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724099928.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:57 Heat of formation + Delta-G solvation = -12.412126 kcal Electronic energy + Delta-G solvation = -17080.105561 eV Core-core repulsion = 14406.575984 eV Total energy + Delta-G solvation = -2673.529577 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.40092 -37.89105 -35.76516 -34.57484 -34.51607 -33.08694 -29.84926 -28.28725 -27.78927 -25.54570 -23.82400 -23.24546 -21.98671 -21.51380 -18.92248 -18.01804 -17.28253 -16.62822 -16.47019 -15.92434 -15.40252 -15.23294 -15.02555 -14.65903 -14.38914 -13.97039 -13.94662 -13.60503 -13.57162 -13.32719 -13.20154 -13.14523 -13.01867 -12.56324 -12.52344 -12.07026 -11.78662 -11.56365 -11.46064 -11.28531 -10.75836 -10.46299 -10.37387 -9.64429 -9.37257 -8.28939 -6.33487 0.12046 0.35586 1.36752 1.39124 1.51357 2.37317 2.68370 3.06304 3.23915 3.54285 3.74935 3.89045 3.96871 4.09142 4.20546 4.28769 4.35356 4.53838 4.60160 4.62768 4.68478 4.78518 4.81619 4.86521 4.90121 4.96027 4.97504 5.11614 5.16974 5.31871 5.35757 5.38030 5.50766 5.61249 5.66567 5.83404 6.01926 6.28104 6.32694 6.74899 7.05878 7.31101 8.88270 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.045921 B = 0.003327 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.600113 B = 8414.272520 C = 8495.699034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.134 4.134 3 C 0.072 3.928 4 N -0.505 5.505 5 C 0.099 3.901 6 C 0.111 3.889 7 N -0.684 5.684 8 C 0.070 3.930 9 C -0.090 4.090 10 C -0.009 4.009 11 C -0.535 4.535 12 H 0.027 0.973 13 C 0.000 4.000 14 N -0.954 5.954 15 Si 0.956 3.044 16 H -0.264 1.264 17 H -0.285 1.285 18 H -0.245 1.245 19 C -0.116 4.116 20 C -0.113 4.113 21 C -0.090 4.090 22 H 0.080 0.920 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.170 0.830 26 H 0.039 0.961 27 H 0.101 0.899 28 H 0.339 0.661 29 H 0.031 0.969 30 H 0.080 0.920 31 H 0.050 0.950 32 H 0.041 0.959 33 H 0.019 0.981 34 H 0.023 0.977 35 H 0.266 0.734 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.386 -3.697 18.029 28.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.136 4.136 3 C -0.085 4.085 4 N -0.214 5.214 5 C -0.038 4.038 6 C -0.018 4.018 7 N -0.315 5.315 8 C -0.058 4.058 9 C -0.128 4.128 10 C -0.047 4.047 11 C -0.573 4.573 12 H 0.046 0.954 13 C -0.196 4.196 14 N -0.595 5.595 15 Si 0.779 3.221 16 H -0.189 1.189 17 H -0.210 1.210 18 H -0.169 1.169 19 C -0.119 4.119 20 C -0.170 4.170 21 C -0.115 4.115 22 H 0.098 0.902 23 H 0.100 0.900 24 H 0.099 0.901 25 H 0.187 0.813 26 H 0.057 0.943 27 H 0.119 0.881 28 H 0.156 0.844 29 H 0.049 0.951 30 H 0.099 0.901 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.038 0.962 34 H 0.041 0.959 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -21.804 -3.570 17.869 28.416 hybrid contribution 0.532 0.425 -0.034 0.682 sum -21.272 -3.145 17.835 27.937 Atomic orbital electron populations 1.20772 0.87833 1.04273 1.03414 1.21285 0.99226 0.93559 0.99556 1.22993 0.89205 0.98991 0.97347 1.67403 1.09682 1.31815 1.12456 1.21062 0.96077 0.88652 0.98015 1.20774 0.88616 1.01976 0.90413 1.60518 1.07026 1.51374 1.12571 1.21930 0.86640 1.00670 0.96591 1.21257 0.95541 1.00620 0.95418 1.19484 0.94061 0.96637 0.94535 1.21530 0.92498 1.50267 0.92985 0.95417 1.26097 1.01078 0.94059 0.98390 1.70080 1.16237 1.52711 1.20482 0.85573 0.77609 0.79264 0.79670 1.18871 1.21042 1.16854 1.20961 0.95218 0.96646 0.99035 1.20842 0.99990 0.92986 1.03217 1.21753 0.92988 0.99469 0.97323 0.90152 0.90043 0.90063 0.81300 0.94303 0.88117 0.84390 0.95093 0.90124 0.93082 0.94017 0.96239 0.95854 0.92487 0.89699 0.90975 0.90199 0.82450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.04 71.23 0.71 -0.27 16 2 C -0.13 -2.24 5.90 -19.77 -0.12 -2.36 16 3 C 0.07 1.49 10.86 84.69 0.92 2.41 16 4 N -0.50 -13.35 10.27 -183.88 -1.89 -15.24 16 5 C 0.10 2.51 6.29 42.54 0.27 2.78 16 6 C 0.11 2.80 5.17 85.55 0.44 3.24 16 7 N -0.68 -19.86 6.45 -517.96 -3.34 -23.20 16 8 C 0.07 2.23 5.69 86.30 0.49 2.73 16 9 C -0.09 -3.66 5.41 30.59 0.17 -3.49 16 10 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 11 C -0.53 -31.95 9.66 25.60 0.25 -31.70 16 12 H 0.03 1.83 7.99 -2.91 -0.02 1.80 16 13 C 0.00 0.00 5.47 84.65 0.46 0.46 16 14 N -0.95 -61.41 13.96 21.45 0.30 -61.11 16 15 Si 0.96 44.97 27.47 68.60 1.88 46.86 16 16 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 17 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 18 H -0.25 -10.64 6.54 99.48 0.65 -9.99 16 19 C -0.12 -2.45 5.90 -19.77 -0.12 -2.56 16 20 C -0.11 -1.95 9.21 71.24 0.66 -1.29 16 21 C -0.09 -1.55 9.54 22.47 0.21 -1.34 16 22 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 23 H 0.08 0.55 8.10 -2.39 -0.02 0.53 16 24 H 0.08 0.58 8.09 -2.39 -0.02 0.56 16 25 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 26 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.10 2.20 6.69 -2.39 -0.02 2.19 16 28 H 0.34 10.36 8.72 -89.69 -0.78 9.58 16 29 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.02 0.91 7.20 -2.38 -0.02 0.89 16 34 H 0.02 1.06 7.57 -2.39 -0.02 1.04 16 35 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 36 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.07 1.49 6.68 -2.39 -0.02 1.47 16 38 H 0.08 1.14 8.09 -2.38 -0.02 1.13 16 39 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -70.88 322.65 1.60 -69.27 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.18 Total: 15.15 kcal Atomic # 6 Polarization: -36.19 SS G_CDS: 4.47 Total: -31.72 kcal Atomic # 7 Polarization: -94.62 SS G_CDS: -4.93 Total: -99.55 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.88 Total: 46.86 kcal Total: -70.88 1.60 -69.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724099928.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.859 kcal (2) G-P(sol) polarization free energy of solvation -70.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds