Wall clock time and date at job start Mon Mar 30 2020 07:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00155 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00356 * 3 2 1 5 5 H 1.48506 * 109.46940 * 30.00478 * 3 2 1 6 6 H 1.48497 * 109.47329 * 150.00191 * 3 2 1 7 7 C 1.37875 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47131 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47131 * 179.97438 * 12 11 10 14 14 N 1.46506 * 109.47289 * 180.02562 * 13 12 11 15 15 C 1.39931 * 120.00240 * 180.02562 * 14 13 12 16 16 C 1.38866 * 120.01739 * 359.72821 * 15 14 13 17 17 C 1.38116 * 119.97587 * 179.74281 * 16 15 14 18 18 C 1.38695 * 120.01964 * 0.51093 * 17 16 15 19 19 O 1.36011 * 119.97998 * 179.74569 * 18 17 16 20 20 C 1.38694 * 120.04195 * 359.76031 * 18 17 16 21 21 C 1.38107 * 120.01964 * 359.97438 * 20 18 17 22 22 H 0.97006 * 119.99727 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 24 24 H 1.09000 * 109.47722 * 300.00831 * 9 7 2 25 25 H 1.08998 * 109.46509 * 60.00598 * 10 9 7 26 26 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 27 27 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 28 28 H 1.09004 * 109.47261 * 300.00303 * 11 10 9 29 29 H 1.09001 * 109.46997 * 60.00426 * 12 11 10 30 30 H 1.08996 * 109.47452 * 300.00000 * 12 11 10 31 31 H 1.09001 * 109.47289 * 60.00050 * 13 12 11 32 32 H 1.09004 * 109.47261 * 300.00306 * 13 12 11 33 33 H 0.97001 * 119.99251 * 0.02562 * 14 13 12 34 34 H 1.07996 * 120.01376 * 359.97438 * 16 15 14 35 35 H 1.07998 * 119.98638 * 180.22554 * 17 16 15 36 36 H 0.96698 * 113.99647 * 270.02215 * 19 18 17 37 37 H 1.08002 * 119.99194 * 179.97438 * 20 18 17 38 38 H 1.08003 * 120.01475 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0023 11 6 5.5514 -2.6366 -0.0022 12 6 6.0614 -4.0791 -0.0028 13 6 7.5914 -4.0791 -0.0033 14 7 8.0798 -5.4604 -0.0045 15 6 9.4555 -5.7161 -0.0046 16 6 10.3582 -4.6609 -0.0094 17 6 11.7160 -4.9143 -0.0042 18 6 12.1778 -6.2221 -0.0049 19 8 13.5150 -6.4707 -0.0050 20 6 11.2769 -7.2766 -0.0058 21 6 9.9189 -7.0252 -0.0055 22 1 -0.4850 0.8401 0.0004 23 1 3.8751 -0.6805 0.8889 24 1 3.8746 -0.6799 -0.8910 25 1 3.6578 -3.1497 -0.8925 26 1 3.6584 -3.1510 0.8875 27 1 5.9147 -2.1236 0.8882 28 1 5.9149 -2.1220 -0.8918 29 1 5.6982 -4.5926 -0.8930 30 1 5.6981 -4.5933 0.8870 31 1 7.9551 -3.5655 0.8866 32 1 7.9544 -3.5650 -0.8934 33 1 7.4494 -6.1976 -0.0051 34 1 9.9988 -3.6425 -0.0135 35 1 12.4182 -4.0938 -0.0043 36 1 13.9017 -6.5417 -0.8884 37 1 11.6374 -8.2947 -0.0067 38 1 9.2174 -7.8464 -0.0066 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034306324.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:08 Heat of formation + Delta-G solvation = -44.253886 kcal Electronic energy + Delta-G solvation = -16660.172222 eV Core-core repulsion = 13887.543221 eV Total energy + Delta-G solvation = -2772.629002 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.94274 -37.76005 -36.13705 -34.46618 -32.64053 -31.22864 -30.70473 -28.26814 -26.22909 -23.86561 -22.76139 -21.64687 -21.01739 -20.04298 -18.52605 -17.38712 -16.67760 -16.20330 -15.76317 -15.50817 -14.49188 -14.45715 -14.22371 -14.11682 -13.63264 -13.03477 -12.90762 -12.64194 -12.36953 -12.08506 -11.97569 -11.79029 -11.46352 -11.07047 -10.76458 -10.57585 -10.56450 -10.00326 -9.91196 -9.71692 -9.50342 -9.20361 -9.17109 -8.54037 -7.50229 -6.04545 -4.02386 1.16877 1.27426 3.24740 3.30116 3.37511 3.41289 3.52969 4.15441 4.44964 4.65601 4.75712 4.85958 4.99807 5.13398 5.26657 5.29572 5.34221 5.45516 5.59577 5.65073 5.78060 5.84053 5.97715 6.08532 6.09630 6.17445 6.31912 6.32880 6.49128 6.60354 6.70157 6.92255 7.09881 7.31247 7.44251 7.49088 7.57518 7.80204 8.54288 9.00547 9.58264 11.09035 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.058501 B = 0.002709 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.509496 B =10334.113940 C =10773.718507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.070 0.930 9 C -0.015 4.015 10 C -0.102 4.102 11 C -0.118 4.118 12 C -0.129 4.129 13 C 0.122 3.878 14 N -0.746 5.746 15 C 0.214 3.786 16 C -0.184 4.184 17 C -0.094 4.094 18 C 0.033 3.967 19 O -0.500 6.500 20 C -0.095 4.095 21 C -0.185 4.185 22 H 0.262 0.738 23 H 0.015 0.985 24 H 0.010 0.990 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.400 0.600 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.380 0.620 37 H 0.125 0.875 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.550 -12.581 -1.617 26.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.156 4.156 12 C -0.167 4.167 13 C -0.002 4.002 14 N -0.375 5.375 15 C 0.110 3.890 16 C -0.207 4.207 17 C -0.113 4.113 18 C -0.013 4.013 19 O -0.309 6.309 20 C -0.114 4.114 21 C -0.207 4.207 22 H 0.072 0.928 23 H 0.033 0.967 24 H 0.028 0.972 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.235 0.765 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.234 0.766 37 H 0.143 0.857 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 23.257 -12.229 -0.994 26.295 hybrid contribution 0.115 0.643 -0.528 0.840 sum 23.372 -11.586 -1.522 26.131 Atomic orbital electron populations 1.69923 1.06317 1.26851 1.51321 1.25062 0.94757 0.99252 0.94628 0.86751 0.80344 0.83553 0.78467 1.20333 1.21423 1.19013 1.21182 0.89681 0.94401 1.50602 0.91141 1.19587 0.97032 0.92527 0.96128 1.21448 0.91740 0.99768 1.01026 1.21610 0.98148 0.94102 1.01739 1.21808 0.92876 0.99402 1.02634 1.21481 0.95143 0.82519 1.01100 1.44892 1.02940 1.07939 1.81706 1.17924 0.84361 0.93328 0.93418 1.20585 0.92213 0.98357 1.09529 1.21172 0.95316 0.96207 0.98580 1.18201 0.83012 0.91929 1.08195 1.84903 1.19085 1.93880 1.33048 1.21119 0.92502 0.98884 0.98893 1.20480 0.95437 0.94803 1.10028 0.92778 0.96715 0.97165 0.92891 0.92864 0.92248 0.92258 0.91475 0.91454 0.92218 0.92246 0.76529 0.85595 0.85675 0.76625 0.85715 0.85862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.13 13.96 55.43 0.77 -27.36 16 2 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 3 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.52 -14.96 9.66 -34.44 -0.33 -15.30 16 8 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 9 C -0.02 -0.37 4.04 -27.88 -0.11 -0.48 16 10 C -0.10 -1.95 5.15 -26.73 -0.14 -2.08 16 11 C -0.12 -1.72 5.21 -26.73 -0.14 -1.86 16 12 C -0.13 -1.49 5.33 -26.73 -0.14 -1.64 16 13 C 0.12 1.25 4.91 -4.04 -0.02 1.23 16 14 N -0.75 -7.29 5.74 -58.58 -0.34 -7.62 16 15 C 0.21 2.23 6.66 -83.70 -0.56 1.68 16 16 C -0.18 -1.91 9.31 -39.39 -0.37 -2.28 16 17 C -0.09 -0.93 9.98 -39.46 -0.39 -1.32 16 18 C 0.03 0.33 6.70 -39.24 -0.26 0.06 16 19 O -0.50 -4.52 13.51 -19.78 -0.27 -4.78 16 20 C -0.09 -0.90 9.98 -39.46 -0.39 -1.29 16 21 C -0.18 -1.76 9.89 -39.40 -0.39 -2.15 16 22 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 23 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 24 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.62 7.96 -51.93 -0.41 0.21 16 32 H 0.06 0.61 7.94 -51.93 -0.41 0.20 16 33 H 0.40 3.38 8.49 -40.82 -0.35 3.04 16 34 H 0.13 1.21 6.73 -52.49 -0.35 0.86 16 35 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.38 1.61 9.06 45.56 0.41 2.03 16 37 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 LS Contribution 318.00 15.07 4.79 4.79 Total: -1.00 -32.46 318.00 -8.32 -40.78 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -5.27 Total: 0.66 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: -3.35 Total: -23.64 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: 0.44 Total: -34.98 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: -0.27 Total: -4.78 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.46 -8.32 -40.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034306324.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.469 kcal (2) G-P(sol) polarization free energy of solvation -32.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds