Wall clock time and date at job start Mon Mar 30 2020 07:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00155 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00356 * 3 2 1 5 5 H 1.48506 * 109.46940 * 30.00478 * 3 2 1 6 6 H 1.48497 * 109.47329 * 150.00191 * 3 2 1 7 7 C 1.37875 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47131 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47131 * 179.97438 * 12 11 10 14 14 N 1.46506 * 109.47289 * 180.02562 * 13 12 11 15 15 C 1.39931 * 120.00240 * 180.02562 * 14 13 12 16 16 C 1.38866 * 120.01739 * 359.72821 * 15 14 13 17 17 C 1.38116 * 119.97587 * 179.74281 * 16 15 14 18 18 C 1.38695 * 120.01964 * 0.51093 * 17 16 15 19 19 O 1.36011 * 119.97998 * 179.74569 * 18 17 16 20 20 C 1.38694 * 120.04195 * 359.76031 * 18 17 16 21 21 C 1.38107 * 120.01964 * 359.97438 * 20 18 17 22 22 H 0.97006 * 119.99727 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 24 24 H 1.09000 * 109.47722 * 300.00831 * 9 7 2 25 25 H 1.08998 * 109.46509 * 60.00598 * 10 9 7 26 26 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 27 27 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 28 28 H 1.09004 * 109.47261 * 300.00303 * 11 10 9 29 29 H 1.09001 * 109.46997 * 60.00426 * 12 11 10 30 30 H 1.08996 * 109.47452 * 300.00000 * 12 11 10 31 31 H 1.09001 * 109.47289 * 60.00050 * 13 12 11 32 32 H 1.09004 * 109.47261 * 300.00306 * 13 12 11 33 33 H 0.97001 * 119.99251 * 0.02562 * 14 13 12 34 34 H 1.07996 * 120.01376 * 359.97438 * 16 15 14 35 35 H 1.07998 * 119.98638 * 180.22554 * 17 16 15 36 36 H 0.96698 * 113.99647 * 270.02215 * 19 18 17 37 37 H 1.08002 * 119.99194 * 179.97438 * 20 18 17 38 38 H 1.08003 * 120.01475 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0023 11 6 5.5514 -2.6366 -0.0022 12 6 6.0614 -4.0791 -0.0028 13 6 7.5914 -4.0791 -0.0033 14 7 8.0798 -5.4604 -0.0045 15 6 9.4555 -5.7161 -0.0046 16 6 10.3582 -4.6609 -0.0094 17 6 11.7160 -4.9143 -0.0042 18 6 12.1778 -6.2221 -0.0049 19 8 13.5150 -6.4707 -0.0050 20 6 11.2769 -7.2766 -0.0058 21 6 9.9189 -7.0252 -0.0055 22 1 -0.4850 0.8401 0.0004 23 1 3.8751 -0.6805 0.8889 24 1 3.8746 -0.6799 -0.8910 25 1 3.6578 -3.1497 -0.8925 26 1 3.6584 -3.1510 0.8875 27 1 5.9147 -2.1236 0.8882 28 1 5.9149 -2.1220 -0.8918 29 1 5.6982 -4.5926 -0.8930 30 1 5.6981 -4.5933 0.8870 31 1 7.9551 -3.5655 0.8866 32 1 7.9544 -3.5650 -0.8934 33 1 7.4494 -6.1976 -0.0051 34 1 9.9988 -3.6425 -0.0135 35 1 12.4182 -4.0938 -0.0043 36 1 13.9017 -6.5417 -0.8884 37 1 11.6374 -8.2947 -0.0067 38 1 9.2174 -7.8464 -0.0066 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034306324.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:08 Heat of formation + Delta-G solvation = -65.882010 kcal Electronic energy + Delta-G solvation = -16661.110088 eV Core-core repulsion = 13887.543221 eV Total energy + Delta-G solvation = -2773.566867 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.64440 -38.51434 -37.21667 -35.73970 -34.42865 -32.26151 -31.83914 -29.40295 -27.49649 -25.05765 -23.74835 -22.57757 -22.00062 -21.66929 -19.20181 -18.87404 -18.09405 -16.97967 -16.78957 -16.32635 -16.20462 -15.37658 -15.27955 -15.12540 -14.80819 -14.30963 -14.02901 -13.91556 -13.64756 -13.22754 -13.05801 -12.93431 -12.66090 -12.64874 -12.09533 -11.89270 -11.72421 -11.36658 -11.28970 -11.24120 -11.14874 -10.76636 -10.74145 -9.91568 -8.29825 -8.22874 -6.34010 0.45543 0.55883 1.35870 1.38031 1.50325 2.36398 2.49627 2.83302 3.05602 3.52395 3.88133 4.00857 4.06880 4.08716 4.25171 4.45809 4.46178 4.57852 4.62773 4.70847 4.79662 4.89436 4.97411 5.03127 5.10715 5.19870 5.29172 5.29779 5.34971 5.38601 5.60371 5.61834 5.67231 5.69154 5.81244 6.29224 6.36817 6.74763 6.84252 7.01019 7.30875 8.87158 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.058501 B = 0.002709 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.509496 B =10334.113940 C =10773.718507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.002 4.002 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.244 1.244 7 C -0.535 4.535 8 H 0.028 0.972 9 C -0.015 4.015 10 C -0.098 4.098 11 C -0.109 4.109 12 C -0.119 4.119 13 C 0.129 3.871 14 N -0.745 5.745 15 C 0.200 3.800 16 C -0.195 4.195 17 C -0.104 4.104 18 C 0.025 3.975 19 O -0.512 6.512 20 C -0.102 4.102 21 C -0.188 4.188 22 H 0.266 0.734 23 H 0.019 0.981 24 H 0.018 0.982 25 H 0.046 0.954 26 H 0.045 0.955 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.406 0.594 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.400 0.600 37 H 0.140 0.860 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.960 -12.278 -1.743 28.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.198 4.198 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.168 1.168 7 C -0.573 4.573 8 H 0.047 0.953 9 C -0.053 4.053 10 C -0.135 4.135 11 C -0.147 4.147 12 C -0.157 4.157 13 C 0.005 3.995 14 N -0.375 5.375 15 C 0.096 3.904 16 C -0.218 4.218 17 C -0.123 4.123 18 C -0.021 4.021 19 O -0.324 6.324 20 C -0.121 4.121 21 C -0.210 4.210 22 H 0.075 0.925 23 H 0.037 0.963 24 H 0.037 0.963 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.241 0.759 34 H 0.148 0.852 35 H 0.154 0.846 36 H 0.257 0.743 37 H 0.158 0.842 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 25.692 -11.953 -1.134 28.359 hybrid contribution -0.664 0.447 -0.500 0.944 sum 25.028 -11.507 -1.634 27.595 Atomic orbital electron populations 1.70086 1.08402 1.28161 1.52845 1.26117 0.95698 1.03837 0.94161 0.85584 0.79501 0.77863 0.79243 1.19089 1.21079 1.16763 1.21593 0.92572 0.92962 1.50198 0.95313 1.19579 0.93512 0.95717 0.96447 1.21345 0.95137 0.96628 1.00422 1.21473 0.94434 0.96359 1.02453 1.21646 0.93825 0.97328 1.02898 1.21327 0.93920 0.82956 1.01300 1.44810 1.02928 1.07875 1.81910 1.18084 0.84541 0.93791 0.94024 1.20733 0.92523 0.98695 1.09863 1.21350 0.95500 0.96719 0.98709 1.18376 0.83519 0.92187 1.08006 1.84839 1.18703 1.93835 1.35017 1.21348 0.92502 0.99621 0.98643 1.20704 0.95872 0.95021 1.09446 0.92547 0.96253 0.96326 0.93537 0.93618 0.91635 0.91468 0.91199 0.91316 0.92166 0.91973 0.75867 0.85178 0.84640 0.74287 0.84204 0.84325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.69 13.96 21.45 0.30 -60.39 16 2 C 0.00 -0.11 5.47 84.65 0.46 0.35 16 3 Si 0.96 44.46 27.47 68.60 1.88 46.34 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.24 -10.45 6.54 99.48 0.65 -9.80 16 7 C -0.54 -31.33 9.66 25.60 0.25 -31.08 16 8 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 9 C -0.02 -0.70 4.04 29.85 0.12 -0.58 16 10 C -0.10 -3.64 5.15 30.60 0.16 -3.48 16 11 C -0.11 -2.94 5.21 30.59 0.16 -2.78 16 12 C -0.12 -2.50 5.33 30.59 0.16 -2.33 16 13 C 0.13 2.37 4.91 86.38 0.42 2.79 16 14 N -0.75 -13.14 5.74 -339.25 -1.95 -15.09 16 15 C 0.20 3.84 6.66 38.15 0.25 4.09 16 16 C -0.20 -3.78 9.31 22.39 0.21 -3.57 16 17 C -0.10 -1.92 9.98 22.35 0.22 -1.70 16 18 C 0.03 0.47 6.70 22.49 0.15 0.62 16 19 O -0.51 -8.40 13.51 -93.67 -1.27 -9.67 16 20 C -0.10 -1.76 9.98 22.35 0.22 -1.53 16 21 C -0.19 -3.26 9.89 22.39 0.22 -3.03 16 22 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 23 H 0.02 0.87 7.20 -2.39 -0.02 0.86 16 24 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 25 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 29 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.06 1.11 7.96 -2.39 -0.02 1.09 16 32 H 0.06 1.12 7.94 -2.38 -0.02 1.10 16 33 H 0.41 6.09 8.49 -92.71 -0.79 5.30 16 34 H 0.13 2.30 6.73 -2.91 -0.02 2.28 16 35 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 36 H 0.40 2.70 9.06 -74.06 -0.67 2.03 16 37 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 38 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -70.11 318.00 1.52 -68.59 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -0.47 Total: 12.46 kcal Atomic # 6 Polarization: -45.26 SS G_CDS: 3.02 Total: -42.24 kcal Atomic # 7 Polarization: -73.83 SS G_CDS: -1.65 Total: -75.48 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -1.27 Total: -9.67 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.88 Total: 46.34 kcal Total: -70.11 1.52 -68.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034306324.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.704 kcal (2) G-P(sol) polarization free energy of solvation -70.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds